Wall clock time and date at job start Mon Mar 30 2020 07:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50705 * 109.46993 * 2 1 4 4 C 1.38303 * 119.96167 * 270.01708 * 3 2 1 5 5 C 1.38263 * 120.14087 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.06856 * 359.68209 * 5 4 3 7 7 C 1.38851 * 119.92609 * 0.59611 * 6 5 4 8 8 N 1.39919 * 120.06935 * 179.70161 * 7 6 5 9 9 C 1.34776 * 119.99961 * 324.54959 * 8 7 6 10 10 O 1.21289 * 120.00225 * 6.26693 * 9 8 7 11 11 C 1.50706 * 120.00190 * 186.27065 * 9 8 7 12 12 H 1.08994 * 109.46903 * 300.00032 * 11 9 8 13 13 C 1.53001 * 109.46912 * 59.99824 * 11 9 8 14 14 N 1.46494 * 109.47097 * 179.97438 * 11 9 8 15 15 C 1.46503 * 120.00543 * 299.99738 * 14 11 9 16 16 C 1.36936 * 120.00090 * 119.99722 * 14 11 9 17 17 H 1.08003 * 119.99614 * 38.08458 * 16 14 11 18 18 C 1.38813 * 120.00688 * 218.07589 * 16 14 11 19 19 N 1.31616 * 119.99328 * 26.34737 * 18 16 14 20 20 Si 1.86794 * 120.00434 * 206.07250 * 18 16 14 21 21 H 1.48499 * 109.47064 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47126 * 119.99943 * 20 18 16 23 23 H 1.48499 * 109.47411 * 240.00067 * 20 18 16 24 24 C 1.38087 * 119.96610 * 89.99911 * 3 2 1 25 25 H 1.09003 * 109.47243 * 299.99990 * 1 2 3 26 26 H 1.09003 * 109.47191 * 60.00523 * 1 2 3 27 27 H 1.09001 * 109.46803 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47541 * 239.99655 * 2 1 3 29 29 H 1.09003 * 109.47191 * 119.99477 * 2 1 3 30 30 H 1.07997 * 119.93151 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.96627 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.03249 * 180.32116 * 6 5 4 33 33 H 0.97002 * 120.00214 * 144.54857 * 8 7 6 34 34 H 1.09002 * 109.47310 * 60.00060 * 13 11 9 35 35 H 1.08994 * 109.46932 * 180.02562 * 13 11 9 36 36 H 1.09001 * 109.47115 * 300.00030 * 13 11 9 37 37 H 1.08998 * 109.47172 * 272.02213 * 15 14 11 38 38 H 1.09003 * 109.46269 * 32.01418 * 15 14 11 39 39 H 1.08994 * 109.47439 * 152.01180 * 15 14 11 40 40 H 0.96999 * 120.00163 * 3.87350 * 19 18 16 41 41 H 1.08007 * 120.03622 * 0.04437 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2621 2.0722 -1.1982 5 6 2.7225 3.3759 -1.2025 6 6 2.9480 4.0343 -0.0092 7 6 2.7237 3.3812 1.1954 8 7 2.9571 4.0431 2.4059 9 6 3.9782 4.9166 2.5103 10 8 4.6239 5.2150 1.5279 11 6 4.3178 5.5224 3.8478 12 1 3.4579 6.0762 4.2246 13 6 4.6803 4.4103 4.8341 14 7 5.4568 6.4313 3.6971 15 6 6.7390 5.9233 3.2029 16 6 5.3230 7.7557 4.0181 17 1 4.7310 8.0470 4.8732 18 6 5.9485 8.7241 3.2448 19 7 6.2156 8.4836 1.9787 20 14 6.4041 10.3711 3.9989 21 1 5.9941 10.3925 5.4261 22 1 7.8726 10.5701 3.9033 23 1 5.7083 11.4601 3.2672 24 6 2.2621 2.0712 1.1963 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0817 1.5614 -2.1325 31 1 2.9014 3.8817 -2.1398 32 1 3.3026 5.0544 -0.0132 33 1 2.3840 3.8733 3.1699 34 1 5.5401 3.8565 4.4573 35 1 4.9254 4.8485 5.8015 36 1 3.8330 3.7338 4.9463 37 1 7.3332 5.5598 4.0413 38 1 6.5608 5.1069 2.5030 39 1 7.2767 6.7250 2.6968 40 1 5.9256 7.6525 1.5711 41 1 2.0828 1.5618 2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:58 Heat of formation + Delta-G solvation = 3.344896 kcal Electronic energy + Delta-G solvation = -21483.127945 eV Core-core repulsion = 18363.373311 eV Total energy + Delta-G solvation = -3119.754634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20626 -38.56010 -35.79837 -34.66344 -33.56367 -32.21522 -29.99481 -29.29353 -28.44734 -25.99242 -24.26490 -23.99302 -22.58901 -21.84051 -20.53643 -19.22815 -17.51321 -17.09897 -16.22757 -16.02502 -15.22794 -14.71451 -14.59236 -14.13470 -13.84709 -13.58781 -13.46857 -13.32776 -13.09102 -12.97456 -12.63041 -12.21599 -11.94296 -11.86551 -11.61468 -11.52082 -11.16372 -10.98201 -10.84050 -10.77965 -10.56253 -10.48733 -10.07183 -9.91061 -9.51552 -8.97720 -8.59911 -8.32959 -7.84349 -6.79384 -6.03051 -3.39645 1.48159 1.53335 3.22760 3.44201 3.50314 3.56016 3.67274 3.96873 4.57087 4.69370 4.83194 5.07896 5.19324 5.21008 5.28431 5.34082 5.41615 5.45776 5.51849 5.64170 5.70453 5.76092 5.81040 5.85314 5.96295 6.00395 6.09765 6.18564 6.38935 6.54383 6.60062 6.64819 6.73422 6.73670 6.83046 6.93089 7.30165 7.34864 7.79423 8.09098 8.60003 8.77272 9.13073 9.81591 10.25619 11.19048 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.033324 B = 0.004001 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.039279 B = 6995.957879 C = 7451.139552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.070 4.070 4 C -0.144 4.144 5 C -0.099 4.099 6 C -0.127 4.127 7 C 0.160 3.840 8 N -0.688 5.688 9 C 0.486 3.514 10 O -0.500 6.500 11 C 0.151 3.849 12 H 0.091 0.909 13 C -0.152 4.152 14 N -0.566 5.566 15 C 0.118 3.882 16 C -0.372 4.372 17 H 0.054 0.946 18 C -0.013 4.013 19 N -0.895 5.895 20 Si 1.072 2.928 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.293 1.293 24 C -0.153 4.153 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.047 0.953 37 H -0.002 1.002 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.284 0.716 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -15.450 -1.056 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.071 4.071 4 C -0.163 4.163 5 C -0.118 4.118 6 C -0.148 4.148 7 C 0.065 3.935 8 N -0.335 5.335 9 C 0.273 3.727 10 O -0.371 6.371 11 C 0.038 3.962 12 H 0.108 0.892 13 C -0.211 4.211 14 N -0.286 5.286 15 C -0.027 4.027 16 C -0.502 4.502 17 H 0.072 0.928 18 C -0.219 4.219 19 N -0.532 5.532 20 Si 0.902 3.098 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.220 1.220 24 C -0.174 4.174 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.239 0.761 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.002 -13.674 -2.003 16.493 hybrid contribution -1.113 -1.583 0.537 2.008 sum -10.115 -15.257 -1.467 18.364 Atomic orbital electron populations 1.21743 0.94869 1.01418 1.02272 1.20504 0.96033 0.92775 1.02623 1.19583 0.98985 0.95815 0.92690 1.20899 1.02883 0.95376 0.97172 1.21051 0.98260 0.94646 0.97824 1.21444 1.00836 1.01610 0.90879 1.17936 0.97736 0.91092 0.86728 1.44270 1.32930 1.44288 1.11996 1.23445 0.78032 0.76986 0.94257 1.90639 1.50033 1.57451 1.39004 1.20815 0.94025 0.92101 0.89218 0.89150 1.22160 1.00721 0.98006 1.00251 1.43786 1.03579 1.05460 1.75813 1.21122 0.87510 0.98564 0.95458 1.19898 1.38050 0.82077 1.10124 0.92825 1.26090 0.99060 1.02604 0.94163 1.70601 1.45579 1.27391 1.09630 0.83453 0.76682 0.75071 0.74638 1.21616 1.21535 1.22010 1.20728 1.05721 0.92942 0.98013 0.92572 0.92551 0.92619 0.91157 0.91238 0.86565 0.86067 0.84171 0.76119 0.92950 0.91540 0.93418 0.98401 0.94996 0.91716 0.90432 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.15 0.37 -0.79 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.07 -0.85 5.13 -104.65 -0.54 -1.39 16 4 C -0.14 -1.82 9.70 -39.55 -0.38 -2.21 16 5 C -0.10 -1.44 10.04 -39.61 -0.40 -1.84 16 6 C -0.13 -2.22 8.71 -39.39 -0.34 -2.56 16 7 C 0.16 2.57 6.30 -83.70 -0.53 2.05 16 8 N -0.69 -10.94 5.18 -9.86 -0.05 -10.99 16 9 C 0.49 9.92 6.76 -10.98 -0.07 9.84 16 10 O -0.50 -12.28 11.88 5.55 0.07 -12.21 16 11 C 0.15 3.10 3.13 -69.08 -0.22 2.88 16 12 H 0.09 1.80 7.89 -51.93 -0.41 1.39 16 13 C -0.15 -2.49 9.10 37.16 0.34 -2.15 16 14 N -0.57 -14.44 2.25 -174.81 -0.39 -14.83 16 15 C 0.12 3.00 8.47 59.85 0.51 3.51 16 16 C -0.37 -10.44 9.29 -15.06 -0.14 -10.58 16 17 H 0.05 1.49 7.95 -52.48 -0.42 1.07 16 18 C -0.01 -0.37 4.78 -17.43 -0.08 -0.45 16 19 N -0.90 -27.74 12.34 55.49 0.68 -27.05 16 20 Si 1.07 25.45 29.99 -169.99 -5.10 20.35 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.15 -2.03 9.62 -39.39 -0.38 -2.41 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.14 2.87 6.20 -52.49 -0.33 2.55 16 33 H 0.40 4.97 8.45 -40.82 -0.34 4.62 16 34 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.60 7.72 -51.93 -0.40 0.20 16 37 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.03 0.79 6.22 -51.93 -0.32 0.47 16 39 H 0.06 1.83 5.64 -51.93 -0.29 1.54 16 40 H 0.28 9.13 7.24 -40.82 -0.30 8.83 16 41 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -33.20 335.98 -7.99 -41.19 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.23 Total: 5.50 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.04 Total: -7.02 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.24 Total: -52.87 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.10 Total: 20.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.20 -7.99 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.533 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds