Wall clock time and date at job start Mon Mar 30 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47536 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47436 * 300.00239 * 3 2 1 6 6 H 1.48507 * 109.47152 * 60.00034 * 3 2 1 7 7 C 1.38652 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00164 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99923 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00326 * 185.05531 * 9 7 2 11 11 C 1.38951 * 120.03719 * 174.48827 * 10 9 7 12 12 C 1.38128 * 120.08539 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.13698 * 359.74059 * 12 11 10 14 14 C 1.38962 * 120.06538 * 0.51126 * 13 12 11 15 15 N 1.39673 * 120.04185 * 179.76870 * 14 13 12 16 16 C 1.46498 * 119.99983 * 359.72373 * 15 14 13 17 17 H 1.08991 * 109.57436 * 35.24810 * 16 15 14 18 18 C 1.50459 * 109.67716 * 155.57050 * 16 15 14 19 19 C 1.54288 * 113.03493 * 212.02579 * 18 16 15 20 20 C 1.54078 * 112.28658 * 318.30312 * 19 18 16 21 21 N 1.44270 * 111.98073 * 318.91084 * 20 19 18 22 22 C 1.47798 * 109.46253 * 96.43821 * 21 20 19 23 23 C 1.45871 * 112.91729 * 276.74235 * 22 21 20 24 24 C 1.38722 * 120.02764 * 354.46643 * 10 9 7 25 25 H 0.97001 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.95942 * 359.95317 * 11 10 9 27 27 H 1.07993 * 119.93231 * 179.97438 * 12 11 10 28 28 H 1.08003 * 119.96975 * 180.27743 * 13 12 11 29 29 H 0.97001 * 119.99800 * 179.73054 * 15 14 13 30 30 H 1.09002 * 108.77285 * 332.94261 * 18 16 15 31 31 H 1.09000 * 108.77155 * 91.22425 * 18 16 15 32 32 H 1.09000 * 108.92028 * 79.02012 * 19 18 16 33 33 H 1.09000 * 108.92132 * 197.67232 * 19 18 16 34 34 H 1.08997 * 108.97602 * 198.26687 * 20 19 18 35 35 H 1.08992 * 108.97695 * 79.56114 * 20 19 18 36 36 H 1.00901 * 111.00070 * 333.56224 * 21 20 19 37 37 H 1.09009 * 108.79614 * 37.62239 * 22 21 20 38 38 H 1.08995 * 108.80019 * 155.96868 * 22 21 20 39 39 H 1.09007 * 109.05323 * 181.86693 * 23 22 21 40 40 H 1.08993 * 109.05268 * 300.85155 * 23 22 21 41 41 H 1.08003 * 120.07481 * 0.03929 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3965 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 1.4355 -4.7348 0.2273 12 6 2.1826 -5.8915 0.3347 13 6 3.5631 -5.8301 0.3161 14 6 4.2038 -4.6026 0.1998 15 7 5.5991 -4.5406 0.1859 16 6 6.3881 -5.7697 0.3001 17 1 5.8747 -6.5822 -0.2141 18 6 7.7444 -5.5602 -0.3165 19 6 8.3228 -6.8413 -0.9527 20 6 8.0786 -8.0882 -0.0811 21 7 8.2824 -7.8154 1.3208 22 6 6.9823 -7.5212 1.9593 23 6 6.5681 -6.1326 1.7911 24 6 3.4555 -3.4386 0.0919 25 1 -0.4850 0.8401 0.0004 26 1 0.3568 -4.7865 0.2383 27 1 1.6870 -6.8463 0.4296 28 1 4.1446 -6.7368 0.3958 29 1 6.0457 -3.6838 0.1008 30 1 7.6653 -4.7917 -1.0854 31 1 8.4310 -5.2134 0.4558 32 1 7.8568 -6.9939 -1.9262 33 1 9.3964 -6.7135 -1.0913 34 1 8.7631 -8.8774 -0.3918 35 1 7.0545 -8.4300 -0.2306 36 1 8.9298 -7.0523 1.4504 37 1 6.2222 -8.1696 1.5234 38 1 7.0577 -7.7367 3.0251 39 1 5.6231 -5.9776 2.3117 40 1 7.3251 -5.4803 2.2262 41 1 3.9510 -2.4836 -0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129040468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:35 Heat of formation + Delta-G solvation = -1.209464 kcal Electronic energy + Delta-G solvation = -21323.741141 eV Core-core repulsion = 18203.789015 eV Total energy + Delta-G solvation = -3119.952126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91182 -38.77705 -36.82465 -34.79269 -32.80293 -32.22852 -31.52137 -28.89081 -27.95426 -25.78599 -25.18539 -24.43347 -21.80984 -21.65426 -20.74814 -19.79542 -17.89328 -17.32166 -16.13845 -15.79419 -15.41281 -15.29041 -15.00858 -14.78404 -14.27983 -13.92776 -13.62366 -13.54687 -13.28768 -13.16113 -12.88983 -12.49747 -12.20275 -11.88173 -11.68594 -11.62255 -11.28805 -11.07214 -11.01911 -10.82759 -10.73928 -10.61295 -10.48392 -10.36460 -9.41201 -9.36813 -8.76214 -8.67830 -7.35533 -6.77650 -6.41066 -4.00246 2.38222 2.56665 3.13435 3.14510 3.19676 3.68804 3.99313 4.13877 4.42244 4.52225 4.71373 4.77375 4.91267 4.98776 5.05670 5.15634 5.34016 5.37315 5.42695 5.50553 5.56354 5.73041 5.73566 5.77692 5.85286 5.91649 5.95449 6.00289 6.16838 6.28675 6.38027 6.65278 6.66191 6.81842 7.04274 7.15742 7.16904 7.39376 7.49397 7.67207 8.02234 8.05360 8.20199 9.05219 9.78061 10.77433 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.003957 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.751133 B = 7073.590367 C = 7767.531912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.190 3.810 11 C -0.236 4.236 12 C -0.040 4.040 13 C -0.279 4.279 14 C 0.250 3.750 15 N -0.749 5.749 16 C 0.160 3.840 17 H 0.079 0.921 18 C -0.133 4.133 19 C -0.147 4.147 20 C 0.050 3.950 21 N -0.674 5.674 22 C 0.053 3.947 23 C -0.170 4.170 24 C -0.303 4.303 25 H 0.268 0.732 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.393 0.607 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.340 0.660 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.625 -12.161 0.663 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.465 4.465 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.135 3.865 11 C -0.257 4.257 12 C -0.059 4.059 13 C -0.302 4.302 14 C 0.149 3.851 15 N -0.380 5.380 16 C 0.054 3.946 17 H 0.097 0.903 18 C -0.171 4.171 19 C -0.187 4.187 20 C -0.081 4.081 21 N -0.303 5.303 22 C -0.077 4.077 23 C -0.210 4.210 24 C -0.326 4.326 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.227 0.773 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 15.255 -12.807 0.847 19.937 hybrid contribution 0.495 2.203 -0.397 2.293 sum 15.751 -10.604 0.450 18.993 Atomic orbital electron populations 1.70051 1.05905 1.27403 1.46594 1.25269 0.95816 0.98746 0.96743 0.85672 0.79044 0.80593 0.78216 1.19272 1.20192 1.20183 1.21341 0.91742 0.80894 1.52541 0.89179 1.83984 1.34262 1.11482 1.78460 1.19067 0.89497 0.87838 0.90091 1.20042 0.99364 0.90367 1.15894 1.20378 0.93017 0.96510 0.96023 1.20076 0.94362 0.94989 1.20792 1.17458 0.82257 0.93518 0.91893 1.44662 1.02818 1.07441 1.83040 1.20500 0.91123 0.88611 0.94394 0.90312 1.21694 0.96099 0.98506 1.00792 1.22559 1.01107 0.94826 1.00169 1.21936 1.01917 0.96539 0.87658 1.61091 1.10881 1.46160 1.12125 1.20944 0.90916 0.95388 1.00437 1.21795 1.03183 0.97976 0.98059 1.20508 0.93754 0.97171 1.21201 0.92165 0.86931 0.87243 0.87936 0.77314 0.90991 0.91973 0.91380 0.91593 0.91090 0.91594 0.84186 0.91235 0.90902 0.90238 0.92044 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.21 9.76 0.07 0.00 -5.21 16 10 C 0.19 4.71 6.64 -39.14 -0.26 4.45 16 11 C -0.24 -5.18 9.99 -39.36 -0.39 -5.57 16 12 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 13 C -0.28 -4.94 9.07 -39.33 -0.36 -5.30 16 14 C 0.25 4.64 6.61 -83.81 -0.55 4.08 16 15 N -0.75 -10.93 5.17 -52.65 -0.27 -11.20 16 16 C 0.16 1.83 1.80 -68.41 -0.12 1.71 16 17 H 0.08 0.98 5.50 -51.93 -0.29 0.69 16 18 C -0.13 -1.23 4.89 -27.33 -0.13 -1.36 16 19 C -0.15 -1.16 5.92 -25.49 -0.15 -1.32 16 20 C 0.05 0.41 6.01 -4.67 -0.03 0.38 16 21 N -0.67 -5.89 6.91 -118.14 -0.82 -6.70 16 22 C 0.05 0.49 5.87 -6.70 -0.04 0.45 16 23 C -0.17 -1.81 4.92 -29.31 -0.14 -1.95 16 24 C -0.30 -6.71 9.01 -39.20 -0.35 -7.07 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 28 H 0.10 1.57 6.22 -52.48 -0.33 1.24 16 29 H 0.39 5.42 8.54 -40.82 -0.35 5.07 16 30 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 31 H 0.06 0.53 6.78 -51.93 -0.35 0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 6.51 -51.93 -0.34 0.24 16 36 H 0.34 2.74 7.35 -39.29 -0.29 2.45 16 37 H 0.07 0.67 7.24 -51.92 -0.38 0.30 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.02 7.99 -51.93 -0.41 0.61 16 40 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 41 H 0.12 2.76 5.64 -52.48 -0.30 2.46 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -30.66 321.54 -9.02 -39.68 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.77 Total: 10.18 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.74 Total: -22.41 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.33 Total: -42.82 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.66 -9.02 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129040468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.469 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds