Wall clock time and date at job start Mon Mar 30 2020 07:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47056 * 2 1 4 4 C 1.52996 * 109.47407 * 119.99853 * 2 1 3 5 5 C 1.53001 * 109.47362 * 240.00221 * 2 1 3 6 6 H 1.08999 * 109.47135 * 179.97438 * 5 2 1 7 7 N 1.46899 * 109.46964 * 299.99942 * 5 2 1 8 8 C 1.50694 * 109.46968 * 59.99717 * 5 2 1 9 9 O 1.21290 * 120.00238 * 259.99724 * 8 5 2 10 10 N 1.34784 * 120.00120 * 80.00536 * 8 5 2 11 11 C 1.39931 * 120.00301 * 175.09463 * 10 8 5 12 12 C 1.39298 * 119.94545 * 326.46650 * 11 10 8 13 13 C 1.38486 * 120.42700 * 179.76241 * 12 11 10 14 14 C 1.37692 * 120.32338 * 0.51501 * 13 12 11 15 15 C 1.40737 * 119.88224 * 359.74159 * 14 13 12 16 16 C 1.41406 * 120.20847 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99654 * 151.40822 * 16 15 14 18 18 C 1.39927 * 120.00064 * 331.40685 * 16 15 14 19 19 N 1.30834 * 120.00208 * 166.41854 * 18 16 15 20 20 Si 1.86804 * 120.00118 * 346.41840 * 18 16 15 21 21 H 1.48492 * 109.47208 * 95.31030 * 20 18 16 22 22 H 1.48498 * 109.47025 * 215.31048 * 20 18 16 23 23 H 1.48499 * 109.46911 * 335.30862 * 20 18 16 24 24 C 1.38241 * 119.94838 * 146.74186 * 11 10 8 25 25 H 1.08999 * 109.47107 * 60.00248 * 1 2 3 26 26 H 1.08994 * 109.46844 * 299.99842 * 1 2 3 27 27 H 1.09006 * 109.46553 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46670 * 59.99869 * 3 2 1 29 29 H 1.08995 * 109.46831 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47075 * 300.00383 * 3 2 1 31 31 H 1.09003 * 109.46845 * 60.00145 * 4 2 1 32 32 H 1.08995 * 109.47884 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47219 * 300.00681 * 4 2 1 34 34 H 1.00892 * 111.00070 * 59.99689 * 7 5 2 35 35 H 1.00900 * 110.99853 * 183.95211 * 7 5 2 36 36 H 0.96999 * 119.99638 * 355.08430 * 10 8 5 37 37 H 1.07998 * 119.78345 * 0.02562 * 12 11 10 38 38 H 1.08002 * 119.84145 * 180.23789 * 13 12 11 39 39 H 1.07991 * 120.05711 * 179.76523 * 14 13 12 40 40 H 0.96998 * 120.00210 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.16159 * 359.95842 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 2.0401 -0.7212 -1.2493 6 1 3.1301 -0.7208 -1.2495 7 7 1.5505 -2.1062 -1.2493 8 6 1.5377 -0.0108 -2.4796 9 8 0.5770 -0.4438 -3.0802 10 7 2.1561 1.1057 -2.9129 11 6 1.7553 1.7075 -4.1110 12 6 1.2964 0.9206 -5.1648 13 6 0.8927 1.5060 -6.3531 14 6 0.9506 2.8728 -6.5096 15 6 1.4171 3.6801 -5.4555 16 6 1.4789 5.0845 -5.6085 17 1 1.3791 5.7266 -4.7458 18 6 1.6693 5.6423 -6.8776 19 7 1.4639 6.9203 -7.0680 20 14 2.2169 4.5622 -8.3000 21 1 1.0278 4.1179 -9.0704 22 1 3.1218 5.3349 -9.1884 23 1 2.9364 3.3754 -7.7719 24 6 1.8209 3.0814 -4.2488 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 -1.7489 1.2492 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -0.2074 2.1392 34 1 0.5419 -2.1331 -1.2493 35 1 1.9260 -2.6224 -2.0307 36 1 2.8789 1.4922 -2.3941 37 1 1.2512 -0.1526 -5.0529 38 1 0.5348 0.8872 -7.1627 39 1 0.6382 3.3244 -7.4395 40 1 1.5956 7.3069 -7.9478 41 1 2.1801 3.6920 -3.4337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313480021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:35 Heat of formation + Delta-G solvation = -27.340340 kcal Electronic energy + Delta-G solvation = -21726.013690 eV Core-core repulsion = 18604.928445 eV Total energy + Delta-G solvation = -3121.085246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54830 -38.07212 -36.82054 -34.65604 -33.26066 -32.55746 -30.34413 -29.19006 -27.36168 -27.24332 -25.71968 -25.12811 -21.97785 -21.16001 -20.05604 -18.92524 -17.78966 -17.08996 -16.34368 -16.06129 -15.59949 -15.02799 -14.60009 -14.46697 -14.34219 -13.74915 -13.53480 -13.27694 -12.75143 -12.69288 -12.59911 -12.27897 -12.14987 -12.03656 -11.76955 -11.64900 -11.09047 -11.06724 -10.86480 -10.78469 -10.67923 -10.64306 -10.25083 -9.88183 -9.68192 -9.40402 -9.13745 -8.70110 -7.71887 -7.17219 -6.94765 -4.53280 2.27688 2.60312 2.99906 3.11716 3.21729 3.31439 3.48299 3.97184 4.30063 4.48422 4.61001 4.66618 4.87105 5.00129 5.27451 5.32837 5.39804 5.53430 5.60854 5.71805 5.82669 5.87240 5.95742 5.99078 6.07208 6.24564 6.28603 6.30358 6.35726 6.49655 6.68095 6.74658 6.86778 7.11229 7.24208 7.29784 7.43969 7.62114 7.81707 7.86165 8.09252 8.31383 8.46728 8.61376 8.78255 10.07755 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032398 B = 0.004399 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.045832 B = 6364.071153 C = 6882.113530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.162 4.162 4 C -0.129 4.129 5 C 0.083 3.917 6 H 0.100 0.900 7 N -0.818 5.818 8 C 0.478 3.522 9 O -0.526 6.526 10 N -0.666 5.666 11 C 0.165 3.835 12 C -0.231 4.231 13 C -0.068 4.068 14 C -0.242 4.242 15 C 0.106 3.894 16 C -0.446 4.446 17 H 0.090 0.910 18 C 0.083 3.917 19 N -0.813 5.813 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.241 1.241 24 C -0.232 4.232 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.350 0.650 35 H 0.344 0.656 36 H 0.403 0.597 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.285 0.715 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -11.774 11.365 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C -0.220 4.220 4 C -0.187 4.187 5 C -0.033 4.033 6 H 0.118 0.882 7 N -0.347 5.347 8 C 0.263 3.737 9 O -0.402 6.402 10 N -0.311 5.311 11 C 0.073 3.927 12 C -0.252 4.252 13 C -0.087 4.087 14 C -0.262 4.262 15 C 0.102 3.898 16 C -0.475 4.475 17 H 0.108 0.892 18 C -0.136 4.136 19 N -0.437 5.437 20 Si 0.743 3.257 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.165 1.165 24 C -0.254 4.254 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.238 0.762 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.921 -11.944 11.557 16.875 hybrid contribution 0.084 0.308 -1.492 1.526 sum 3.005 -11.637 10.065 15.676 Atomic orbital electron populations 1.21935 0.94093 1.02211 1.02307 1.20441 0.96297 0.94895 0.93753 1.22175 1.01207 0.95250 1.03343 1.21737 1.00630 1.00992 0.95317 1.21660 1.00686 0.89221 0.91714 0.88200 1.59194 1.15560 1.09919 1.50034 1.22013 0.83481 0.81169 0.86989 1.90711 1.26093 1.65379 1.58020 1.43860 1.36898 1.27220 1.23091 1.17559 0.99080 0.91748 0.84349 1.20296 1.13213 0.98149 0.93569 1.20473 0.97866 0.94419 0.95920 1.20993 1.11170 0.93713 1.00299 1.17487 0.88346 0.93324 0.90622 1.19458 1.42501 0.90449 0.95075 0.89211 1.26155 0.91899 0.95393 1.00109 1.69661 1.35521 1.13224 1.25331 0.86279 0.79309 0.80711 0.79446 1.19855 1.22196 1.16451 1.20688 1.13105 0.91007 1.00583 0.92240 0.92337 0.92077 0.91702 0.92157 0.91445 0.91262 0.92869 0.93006 0.83481 0.84396 0.76174 0.87680 0.88537 0.88368 0.90450 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 7.89 37.16 0.29 -1.39 16 2 C -0.05 -0.54 0.62 -154.50 -0.10 -0.64 16 3 C -0.16 -1.62 7.43 37.16 0.28 -1.35 16 4 C -0.13 -1.13 8.32 37.16 0.31 -0.82 16 5 C 0.08 0.94 2.52 -68.87 -0.17 0.76 16 6 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 7 N -0.82 -8.65 8.16 -5.66 -0.05 -8.69 16 8 C 0.48 7.39 5.14 -10.98 -0.06 7.34 16 9 O -0.53 -10.00 13.62 5.55 0.08 -9.93 16 10 N -0.67 -10.82 4.18 -9.91 -0.04 -10.86 16 11 C 0.16 3.47 6.27 -83.77 -0.52 2.95 16 12 C -0.23 -5.14 8.67 -39.10 -0.34 -5.48 16 13 C -0.07 -1.54 10.02 -39.69 -0.40 -1.94 16 14 C -0.24 -5.95 6.93 -38.84 -0.27 -6.22 16 15 C 0.11 2.68 5.18 -106.85 -0.55 2.13 16 16 C -0.45 -12.02 9.61 -37.74 -0.36 -12.38 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.17 5.46 -17.34 -0.09 2.08 16 19 N -0.81 -21.70 13.93 55.55 0.77 -20.92 16 20 Si 0.91 20.92 24.37 -169.99 -4.14 16.78 16 21 H -0.27 -6.08 6.76 56.52 0.38 -5.70 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.24 -5.62 6.50 56.52 0.37 -5.25 16 24 C -0.23 -5.30 9.70 -38.68 -0.38 -5.67 16 25 H 0.06 0.85 7.00 -51.93 -0.36 0.48 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.82 5.88 -51.93 -0.31 0.51 16 31 H 0.07 0.63 7.60 -51.93 -0.39 0.24 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.35 3.95 6.75 -39.30 -0.27 3.69 16 35 H 0.34 3.51 9.06 -39.29 -0.36 3.16 16 36 H 0.40 5.31 7.39 -40.82 -0.30 5.01 16 37 H 0.11 2.29 6.40 -52.49 -0.34 1.95 16 38 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 39 H 0.10 2.40 4.22 -52.49 -0.22 2.17 16 40 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -29.21 320.67 -6.80 -36.01 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -5.88 Total: 13.41 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.36 Total: -20.63 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.69 Total: -40.47 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.14 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.21 -6.80 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313480021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.670 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds