Wall clock time and date at job start Mon Mar 30 2020 07:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46795 * 2 1 4 4 N 1.46503 * 109.46932 * 240.00071 * 2 1 3 5 5 C 1.39850 * 119.99790 * 85.00006 * 4 2 1 6 6 C 1.39599 * 119.84436 * 0.02562 * 5 4 2 7 7 C 1.38055 * 120.55463 * 179.97438 * 6 5 4 8 8 C 1.38736 * 120.21885 * 359.97438 * 7 6 5 9 9 N 1.38860 * 120.16711 * 180.02562 * 8 7 6 10 10 C 1.41569 * 119.67188 * 359.76721 * 8 7 6 11 11 C 1.41023 * 120.26959 * 180.27436 * 10 8 7 12 12 H 1.08004 * 120.00059 * 333.82744 * 11 10 8 13 13 C 1.39893 * 120.00124 * 153.82051 * 11 10 8 14 14 N 1.30891 * 119.99825 * 344.00571 * 13 11 10 15 15 Si 1.86794 * 119.99893 * 164.00296 * 13 11 10 16 16 H 1.48505 * 109.47269 * 60.00175 * 15 13 11 17 17 H 1.48498 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47484 * 300.00274 * 15 13 11 19 19 C 1.38006 * 119.83733 * 180.02562 * 5 4 2 20 20 C 1.53002 * 109.46751 * 120.00163 * 2 1 3 21 21 H 1.08998 * 110.80674 * 63.63028 * 20 2 1 22 22 C 1.54810 * 110.90793 * 299.99253 * 20 2 1 23 23 C 1.54094 * 104.19074 * 220.92569 * 22 20 2 24 24 O 1.43755 * 107.29318 * 357.97213 * 23 22 20 25 25 C 1.44378 * 106.97014 * 26.51625 * 24 23 22 26 26 H 1.08999 * 109.46738 * 59.99240 * 1 2 3 27 27 H 1.08991 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46439 * 300.00326 * 1 2 3 29 29 H 0.97001 * 119.99712 * 265.00400 * 4 2 1 30 30 H 1.08010 * 119.72402 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.89056 * 179.97438 * 7 6 5 32 32 H 0.97004 * 119.99447 * 359.97438 * 9 8 7 33 33 H 0.96994 * 120.00506 * 179.97438 * 9 8 7 34 34 H 0.97002 * 120.00209 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.11313 * 359.97117 * 19 5 4 36 36 H 1.08998 * 110.49143 * 339.60642 * 22 20 2 37 37 H 1.09004 * 110.48449 * 102.11445 * 22 20 2 38 38 H 1.09000 * 109.88103 * 117.39911 * 23 22 20 39 39 H 1.09005 * 109.87873 * 238.55407 * 23 22 20 40 40 H 1.09002 * 110.61139 * 201.43842 * 25 24 23 41 41 H 1.08991 * 110.62152 * 78.44182 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1519 0.0071 -2.4009 6 6 1.8195 1.3617 -2.4597 7 6 1.9461 2.0647 -3.6410 8 6 2.4071 1.4301 -4.7853 9 7 2.5346 2.1384 -5.9728 10 6 2.7522 0.0580 -4.7350 11 6 3.2276 -0.5982 -5.8891 12 1 2.9511 -0.2365 -6.8685 13 6 4.0574 -1.7177 -5.7655 14 7 4.6457 -1.9734 -4.6246 15 14 4.3258 -2.8474 -7.2287 16 1 4.9280 -2.0760 -8.3458 17 1 5.2393 -3.9519 -6.8404 18 1 3.0232 -3.4127 -7.6633 19 6 2.6117 -0.6469 -3.5258 20 6 2.0400 -0.7213 1.2493 21 1 1.7423 -1.7698 1.2396 22 6 1.5425 -0.0175 2.5353 23 6 2.7615 -0.0466 3.4775 24 8 3.8139 -0.7471 2.7932 25 6 3.5785 -0.5834 1.3782 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 2.2490 -1.6318 -1.1526 30 1 1.4602 1.8639 -1.5735 31 1 1.6855 3.1123 -3.6745 32 1 2.3007 3.0793 -6.0037 33 1 2.8575 1.6925 -6.7713 34 1 5.2214 -2.7494 -4.5389 35 1 2.8684 -1.6948 -3.4764 36 1 1.2515 1.0105 2.3195 37 1 0.7075 -0.5658 2.9715 38 1 3.0797 0.9712 3.7035 39 1 2.5056 -0.5703 4.3986 40 1 4.0828 -1.3666 0.8121 41 1 3.9047 0.4021 1.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127558378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:24 Heat of formation + Delta-G solvation = -29.903707 kcal Electronic energy + Delta-G solvation = -21480.117612 eV Core-core repulsion = 18358.921211 eV Total energy + Delta-G solvation = -3121.196402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60874 -37.94248 -36.04743 -33.47118 -33.24444 -31.12430 -29.52278 -29.25848 -28.62117 -26.03062 -24.80540 -22.80504 -22.38542 -21.32444 -19.92358 -19.56655 -17.19744 -16.47259 -16.38573 -15.59344 -15.43071 -15.19661 -14.81781 -14.55385 -14.34217 -13.65634 -13.12288 -12.89884 -12.53829 -12.40773 -12.38495 -12.07524 -11.81114 -11.52244 -11.41867 -11.25257 -11.12576 -11.05006 -10.94203 -10.70200 -10.44659 -10.35721 -9.86244 -9.76239 -9.63150 -9.30309 -9.04475 -7.77525 -7.22483 -6.61356 -5.54071 -4.06481 2.92438 3.12805 3.15528 3.31309 3.47966 3.96065 4.03569 4.26420 4.64035 4.77859 4.81851 4.96019 5.07444 5.31257 5.42537 5.45544 5.59949 5.66568 5.68003 5.79041 5.87884 5.92995 5.95303 6.02963 6.11472 6.32906 6.37599 6.52253 6.66390 6.89144 7.12203 7.15396 7.31860 7.48473 7.70609 7.87819 7.99556 8.12318 8.45935 8.74808 8.89733 8.93792 9.00176 9.25946 9.34254 10.37802 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.004700 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.905855 B = 5955.406372 C = 6837.511923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.073 0.927 4 N -0.757 5.757 5 C 0.180 3.820 6 C -0.256 4.256 7 C -0.153 4.153 8 C 0.084 3.916 9 N -0.889 5.889 10 C 0.097 3.903 11 C -0.466 4.466 12 H 0.070 0.930 13 C 0.078 3.922 14 N -0.800 5.800 15 Si 0.901 3.099 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.201 4.201 20 C -0.126 4.126 21 H 0.085 0.915 22 C -0.147 4.147 23 C 0.047 3.953 24 O -0.384 6.384 25 C 0.056 3.944 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.387 0.613 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.374 0.626 33 H 0.388 0.612 34 H 0.275 0.725 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 2.086 9.927 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.091 0.909 4 N -0.391 5.391 5 C 0.081 3.919 6 C -0.280 4.280 7 C -0.177 4.177 8 C -0.016 4.016 9 N -0.432 5.432 10 C 0.091 3.909 11 C -0.497 4.497 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.427 5.427 15 Si 0.727 3.273 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.225 4.225 20 C -0.146 4.146 21 H 0.103 0.897 22 C -0.185 4.185 23 C -0.030 4.030 24 O -0.303 6.303 25 C -0.020 4.020 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.220 0.780 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.199 0.801 33 H 0.216 0.784 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.446 1.894 10.300 11.377 hybrid contribution 0.111 -0.550 -1.007 1.153 sum -4.335 1.343 9.293 10.342 Atomic orbital electron populations 1.22326 0.96955 1.01693 1.01569 1.20514 0.92893 0.96352 0.83845 0.90873 1.44382 1.76483 1.11369 1.06902 1.17471 0.98026 0.91052 0.85302 1.19620 1.18061 0.93354 0.96968 1.19703 1.08121 0.97157 0.92751 1.17868 1.05566 0.91760 0.86449 1.41812 1.79537 1.11183 1.10644 1.16961 0.92071 0.88389 0.93445 1.19099 1.26672 1.10417 0.93490 0.91188 1.25729 0.94046 0.97450 0.96613 1.69861 1.22289 1.24976 1.25547 0.86497 0.78798 0.79906 0.82149 1.19365 1.20610 1.19178 1.20480 1.10609 0.99708 0.91726 1.22999 0.96024 1.00850 0.94705 0.89687 1.22948 0.98491 1.01864 0.95230 1.23132 0.87092 0.96849 0.95971 1.88857 1.48454 1.74540 1.18434 1.23605 0.94591 1.02334 0.81508 0.91802 0.93002 0.93011 0.78019 0.89677 0.89876 0.80136 0.78357 0.91392 0.86563 0.90345 0.90535 0.92617 0.90275 0.88637 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.19 37.16 0.34 -1.92 16 2 C 0.17 2.52 1.70 -67.92 -0.12 2.40 16 3 H 0.07 1.16 6.41 -51.93 -0.33 0.83 16 4 N -0.76 -13.79 5.09 -52.17 -0.27 -14.05 16 5 C 0.18 4.05 6.63 -83.78 -0.56 3.49 16 6 C -0.26 -5.66 8.84 -39.14 -0.35 -6.01 16 7 C -0.15 -3.47 9.86 -39.46 -0.39 -3.86 16 8 C 0.08 2.03 6.79 -83.22 -0.56 1.47 16 9 N -0.89 -18.18 8.98 32.75 0.29 -17.88 16 10 C 0.10 2.54 5.57 -106.66 -0.59 1.95 16 11 C -0.47 -12.18 8.48 -37.91 -0.32 -12.51 16 12 H 0.07 1.74 6.70 -52.48 -0.35 1.39 16 13 C 0.08 1.96 5.16 -17.33 -0.09 1.87 16 14 N -0.80 -20.83 10.97 55.55 0.61 -20.22 16 15 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 19 C -0.20 -5.13 8.49 -38.75 -0.33 -5.46 16 20 C -0.13 -1.59 2.74 -88.61 -0.24 -1.83 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 C -0.15 -1.51 5.61 -25.21 -0.14 -1.65 16 23 C 0.05 0.50 7.70 37.73 0.29 0.80 16 24 O -0.38 -5.48 11.52 -35.23 -0.41 -5.89 16 25 C 0.06 0.79 7.02 38.21 0.27 1.05 16 26 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.58 7.05 -51.93 -0.37 0.21 16 29 H 0.39 6.85 8.61 -40.82 -0.35 6.49 16 30 H 0.09 1.70 6.06 -52.48 -0.32 1.38 16 31 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.37 6.47 8.83 -40.82 -0.36 6.11 16 33 H 0.39 7.81 7.05 -40.82 -0.29 7.52 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.12 3.09 6.23 -52.48 -0.33 2.77 16 36 H 0.08 0.76 7.50 -51.93 -0.39 0.37 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -28.21 326.61 -8.66 -36.87 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -5.99 Total: 22.55 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.79 Total: -20.20 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.64 Total: -52.15 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.41 Total: -5.89 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.21 -8.66 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127558378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.964 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds