Wall clock time and date at job start Mon Mar 30 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46795 * 2 1 4 4 N 1.46503 * 109.46932 * 240.00071 * 2 1 3 5 5 C 1.39850 * 119.99790 * 85.00006 * 4 2 1 6 6 C 1.39599 * 119.84436 * 0.02562 * 5 4 2 7 7 C 1.38055 * 120.55463 * 179.97438 * 6 5 4 8 8 C 1.38736 * 120.21885 * 359.97438 * 7 6 5 9 9 N 1.38860 * 120.16711 * 180.02562 * 8 7 6 10 10 C 1.41569 * 119.67188 * 359.76721 * 8 7 6 11 11 C 1.41023 * 120.26959 * 180.27436 * 10 8 7 12 12 H 1.08004 * 120.00059 * 333.82744 * 11 10 8 13 13 C 1.39893 * 120.00124 * 153.82051 * 11 10 8 14 14 N 1.30891 * 119.99825 * 344.00571 * 13 11 10 15 15 Si 1.86794 * 119.99893 * 164.00296 * 13 11 10 16 16 H 1.48505 * 109.47269 * 60.00175 * 15 13 11 17 17 H 1.48498 * 109.47313 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47484 * 300.00274 * 15 13 11 19 19 C 1.38006 * 119.83733 * 180.02562 * 5 4 2 20 20 C 1.53002 * 109.46751 * 120.00163 * 2 1 3 21 21 H 1.08998 * 110.80674 * 63.63028 * 20 2 1 22 22 C 1.54810 * 110.90793 * 299.99253 * 20 2 1 23 23 C 1.54094 * 104.19074 * 220.92569 * 22 20 2 24 24 O 1.43755 * 107.29318 * 357.97213 * 23 22 20 25 25 C 1.44378 * 106.97014 * 26.51625 * 24 23 22 26 26 H 1.08999 * 109.46738 * 59.99240 * 1 2 3 27 27 H 1.08991 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46439 * 300.00326 * 1 2 3 29 29 H 0.97001 * 119.99712 * 265.00400 * 4 2 1 30 30 H 1.08010 * 119.72402 * 359.97438 * 6 5 4 31 31 H 1.08000 * 119.89056 * 179.97438 * 7 6 5 32 32 H 0.97004 * 119.99447 * 359.97438 * 9 8 7 33 33 H 0.96994 * 120.00506 * 179.97438 * 9 8 7 34 34 H 0.97002 * 120.00209 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.11313 * 359.97117 * 19 5 4 36 36 H 1.08998 * 110.49143 * 339.60642 * 22 20 2 37 37 H 1.09004 * 110.48449 * 102.11445 * 22 20 2 38 38 H 1.09000 * 109.88103 * 117.39911 * 23 22 20 39 39 H 1.09005 * 109.87873 * 238.55407 * 23 22 20 40 40 H 1.09002 * 110.61139 * 201.43842 * 25 24 23 41 41 H 1.08991 * 110.62152 * 78.44182 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1519 0.0071 -2.4009 6 6 1.8195 1.3617 -2.4597 7 6 1.9461 2.0647 -3.6410 8 6 2.4071 1.4301 -4.7853 9 7 2.5346 2.1384 -5.9728 10 6 2.7522 0.0580 -4.7350 11 6 3.2276 -0.5982 -5.8891 12 1 2.9511 -0.2365 -6.8685 13 6 4.0574 -1.7177 -5.7655 14 7 4.6457 -1.9734 -4.6246 15 14 4.3258 -2.8474 -7.2287 16 1 4.9280 -2.0760 -8.3458 17 1 5.2393 -3.9519 -6.8404 18 1 3.0232 -3.4127 -7.6633 19 6 2.6117 -0.6469 -3.5258 20 6 2.0400 -0.7213 1.2493 21 1 1.7423 -1.7698 1.2396 22 6 1.5425 -0.0175 2.5353 23 6 2.7615 -0.0466 3.4775 24 8 3.8139 -0.7471 2.7932 25 6 3.5785 -0.5834 1.3782 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 2.2490 -1.6318 -1.1526 30 1 1.4602 1.8639 -1.5735 31 1 1.6855 3.1123 -3.6745 32 1 2.3007 3.0793 -6.0037 33 1 2.8575 1.6925 -6.7713 34 1 5.2214 -2.7494 -4.5389 35 1 2.8684 -1.6948 -3.4764 36 1 1.2515 1.0105 2.3195 37 1 0.7075 -0.5658 2.9715 38 1 3.0797 0.9712 3.7035 39 1 2.5056 -0.5703 4.3986 40 1 4.0828 -1.3666 0.8121 41 1 3.9047 0.4021 1.0462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127558378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:23 Heat of formation + Delta-G solvation = -47.955677 kcal Electronic energy + Delta-G solvation = -21480.900404 eV Core-core repulsion = 18358.921211 eV Total energy + Delta-G solvation = -3121.979194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69831 -39.61085 -37.47509 -35.32341 -34.71935 -32.46277 -31.30384 -30.52203 -29.71914 -27.72243 -26.60544 -23.97773 -23.48692 -22.95746 -21.41796 -20.98324 -18.93153 -17.95005 -17.56177 -17.21126 -16.89483 -16.56660 -16.34786 -15.96731 -15.62893 -14.77618 -14.62138 -14.22750 -14.06047 -13.86852 -13.72398 -13.62496 -13.34498 -13.10599 -12.91459 -12.73733 -12.42846 -12.37284 -12.16317 -12.07184 -11.78943 -11.70618 -11.43181 -11.31791 -11.08963 -10.91076 -10.64575 -9.37533 -9.11733 -8.48613 -7.26715 -5.98523 1.15160 1.41228 1.50228 1.54276 1.68365 2.27764 2.84150 2.95210 3.05023 3.61309 3.79070 3.79587 3.92754 4.01347 4.21022 4.31771 4.43063 4.44579 4.63197 4.64123 4.80650 4.87018 4.87301 4.89115 4.91745 5.04676 5.12151 5.23920 5.25718 5.38255 5.43725 5.48779 5.69893 5.91128 5.92658 6.09162 6.19905 6.31628 6.59351 6.99601 7.09150 7.16438 7.29292 7.49894 7.68621 8.52231 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.004700 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.905855 B = 5955.406372 C = 6837.511923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.171 3.829 3 H 0.066 0.934 4 N -0.754 5.754 5 C 0.180 3.820 6 C -0.256 4.256 7 C -0.159 4.159 8 C 0.067 3.933 9 N -0.880 5.880 10 C 0.061 3.939 11 C -0.495 4.495 12 H 0.072 0.928 13 C 0.035 3.965 14 N -0.833 5.833 15 Si 0.972 3.028 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.266 1.266 19 C -0.226 4.226 20 C -0.118 4.118 21 H 0.088 0.912 22 C -0.139 4.139 23 C 0.039 3.961 24 O -0.405 6.405 25 C 0.055 3.945 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.387 0.613 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.390 0.610 33 H 0.389 0.611 34 H 0.278 0.722 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 2.681 11.083 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.084 0.916 4 N -0.387 5.387 5 C 0.080 3.920 6 C -0.280 4.280 7 C -0.183 4.183 8 C -0.035 4.035 9 N -0.424 5.424 10 C 0.056 3.944 11 C -0.526 4.526 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.461 5.461 15 Si 0.794 3.206 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.191 1.191 19 C -0.251 4.251 20 C -0.137 4.137 21 H 0.106 0.894 22 C -0.177 4.177 23 C -0.038 4.038 24 O -0.324 6.324 25 C -0.021 4.021 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.220 0.780 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.217 0.783 33 H 0.217 0.783 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.597 2.517 11.482 13.019 hybrid contribution 0.431 -0.655 -1.226 1.456 sum -5.166 1.862 10.255 11.633 Atomic orbital electron populations 1.22242 0.95443 1.02044 1.02063 1.20685 0.93870 0.95778 0.83156 0.91638 1.44485 1.75970 1.11401 1.06796 1.17533 0.96923 0.91538 0.85988 1.19935 1.17118 0.93131 0.97780 1.20063 1.07340 0.98471 0.92412 1.18049 1.05898 0.91499 0.88029 1.41688 1.79196 1.11872 1.09646 1.17347 0.93227 0.89828 0.94010 1.19362 1.27731 1.11816 0.93709 0.90951 1.26518 0.93438 0.98463 0.99327 1.69950 1.23041 1.25611 1.27501 0.85415 0.78618 0.77834 0.78716 1.18560 1.20033 1.19053 1.20456 1.12432 0.99081 0.93098 1.22891 0.94830 1.01133 0.94871 0.89363 1.22955 0.98808 1.02490 0.93424 1.23386 0.86470 0.97415 0.96492 1.88837 1.50058 1.75226 1.18326 1.23509 0.95712 1.01147 0.81771 0.93895 0.92760 0.89855 0.78006 0.87296 0.87286 0.78260 0.78298 0.91133 0.88680 0.89264 0.88321 0.91733 0.88318 0.90112 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.19 71.98 0.66 -3.25 16 2 C 0.17 4.75 1.70 44.99 0.08 4.83 16 3 H 0.07 1.95 6.41 -2.39 -0.02 1.94 16 4 N -0.75 -27.42 5.09 -318.95 -1.62 -29.04 16 5 C 0.18 8.21 6.63 38.14 0.25 8.46 16 6 C -0.26 -11.08 8.84 22.55 0.20 -10.88 16 7 C -0.16 -7.03 9.86 22.35 0.22 -6.81 16 8 C 0.07 3.25 6.79 38.97 0.26 3.51 16 9 N -0.88 -35.64 8.98 -50.31 -0.45 -36.09 16 10 C 0.06 3.30 5.57 -21.18 -0.12 3.19 16 11 C -0.49 -26.63 8.48 23.35 0.20 -26.44 16 12 H 0.07 3.69 6.70 -2.91 -0.02 3.67 16 13 C 0.04 1.81 5.16 85.23 0.44 2.25 16 14 N -0.83 -44.91 10.97 21.82 0.24 -44.67 16 15 Si 0.97 39.52 29.59 68.60 2.03 41.55 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 19 C -0.23 -11.95 8.49 22.81 0.19 -11.76 16 20 C -0.12 -2.75 2.74 -9.49 -0.03 -2.78 16 21 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 22 C -0.14 -2.37 5.61 31.58 0.18 -2.19 16 23 C 0.04 0.73 7.70 72.35 0.56 1.29 16 24 O -0.40 -11.11 11.52 -148.98 -1.72 -12.82 16 25 C 0.06 1.53 7.02 72.67 0.51 2.04 16 26 H 0.04 1.24 7.69 -2.39 -0.02 1.23 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.53 7.05 -2.38 -0.02 1.51 16 29 H 0.39 13.96 8.61 -92.71 -0.80 13.16 16 30 H 0.11 4.13 6.06 -2.91 -0.02 4.11 16 31 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 32 H 0.39 13.01 8.83 -92.71 -0.82 12.19 16 33 H 0.39 15.66 7.05 -92.71 -0.65 15.01 16 34 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 35 H 0.10 5.34 6.23 -2.91 -0.02 5.32 16 36 H 0.09 1.36 7.50 -2.39 -0.02 1.35 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.05 1.57 8.01 -2.39 -0.02 1.55 16 Total: -1.00 -62.21 326.61 0.88 -61.32 By element: Atomic # 1 Polarization: 59.49 SS G_CDS: -1.20 Total: 58.29 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.61 Total: -38.53 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -1.84 Total: -109.81 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.72 Total: -12.82 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -62.21 0.88 -61.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127558378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.367 kcal (2) G-P(sol) polarization free energy of solvation -62.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds