Wall clock time and date at job start Mon Mar 30 2020 07:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 C 1.38395 * 119.99868 * 179.97438 * 3 2 1 5 5 N 1.32502 * 119.18061 * 359.97438 * 4 3 2 6 6 C 1.32485 * 120.93351 * 180.02562 * 5 4 3 7 7 C 1.50700 * 120.35423 * 180.27051 * 6 5 4 8 8 C 1.38128 * 119.28834 * 359.97438 * 6 5 4 9 9 C 1.39642 * 118.49487 * 0.02562 * 8 6 5 10 10 N 1.38530 * 120.48627 * 179.97438 * 9 8 6 11 11 C 1.46503 * 119.99612 * 87.97806 * 10 9 8 12 12 C 1.50700 * 109.46841 * 90.00075 * 11 10 9 13 13 H 1.08003 * 120.00446 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99725 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00126 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46929 * 60.00424 * 16 14 12 18 18 H 1.48501 * 109.46875 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47223 * 300.00035 * 16 14 12 20 20 C 1.46492 * 119.99985 * 267.97708 * 10 9 8 21 21 C 1.53000 * 117.50299 * 3.38763 * 20 10 9 22 22 C 1.52997 * 117.49908 * 294.72720 * 20 10 9 23 23 N 1.32436 * 119.17742 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46346 * 299.99826 * 1 2 3 26 26 H 1.08997 * 109.47041 * 59.99034 * 1 2 3 27 27 H 1.09003 * 109.47072 * 240.00336 * 2 1 3 28 28 H 1.08994 * 109.47334 * 120.00519 * 2 1 3 29 29 H 0.97001 * 120.00239 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47128 * 269.71866 * 7 6 5 31 31 H 1.09007 * 109.46918 * 29.72404 * 7 6 5 32 32 H 1.09007 * 109.47007 * 149.71762 * 7 6 5 33 33 H 1.08009 * 120.75030 * 180.02562 * 8 6 5 34 34 H 1.09005 * 109.46940 * 209.99336 * 11 10 9 35 35 H 1.08993 * 109.47388 * 329.99795 * 11 10 9 36 36 H 0.96994 * 120.00315 * 180.02562 * 15 14 12 37 37 H 1.09000 * 115.54826 * 149.05676 * 20 10 9 38 38 H 1.09007 * 117.49472 * 359.97438 * 21 20 10 39 39 H 1.08997 * 117.50352 * 145.01368 * 21 20 10 40 40 H 1.09002 * 117.49919 * 214.97742 * 22 20 10 41 41 H 1.08998 * 117.49873 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3791 1.6340 0.0005 5 7 4.2256 0.6147 0.0016 6 6 5.5349 0.8167 0.0026 7 6 6.4859 -0.3523 -0.0024 8 6 6.0190 2.1104 0.0021 9 6 5.1030 3.1645 0.0010 10 7 5.5431 4.4780 0.0010 11 6 5.8193 5.1579 -1.2670 12 6 4.5677 5.8421 -1.7531 13 1 3.6574 5.7767 -1.1756 14 6 4.5846 6.5517 -2.9352 15 7 5.6929 6.6309 -3.6387 16 14 3.0329 7.3992 -3.5381 17 1 2.5882 8.3938 -2.5290 18 1 3.3129 8.0884 -4.8233 19 1 1.9641 6.3886 -3.7416 20 6 5.7323 5.1871 1.2688 21 6 5.5036 4.3990 2.5601 22 6 4.4896 5.4576 2.1193 23 7 3.8026 2.8889 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3881 2.1185 0.0004 30 1 6.7190 -0.6354 1.0240 31 1 6.0229 -1.1951 -0.5157 32 1 7.4037 -0.0718 -0.5193 33 1 7.0819 2.3024 0.0025 34 1 6.6043 5.8994 -1.1182 35 1 6.1451 4.4275 -2.0075 36 1 5.7049 7.1304 -4.4701 37 1 6.5187 5.9419 1.2725 38 1 5.2119 3.3529 2.4663 39 1 6.1392 4.6355 3.4134 40 1 4.4585 6.3901 2.6828 41 1 3.5313 5.1075 1.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131569600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:09 Heat of formation + Delta-G solvation = 93.538597 kcal Electronic energy + Delta-G solvation = -21660.231452 eV Core-core repulsion = 18576.680661 eV Total energy + Delta-G solvation = -3083.550791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46500 -37.58180 -36.13887 -34.12079 -33.30249 -32.32087 -30.67701 -29.43252 -27.84038 -26.41559 -23.64959 -22.50845 -22.25239 -22.10000 -21.73739 -19.44510 -17.32135 -16.86456 -16.26507 -15.76292 -15.19103 -15.15015 -14.70416 -14.64035 -14.34515 -14.18828 -13.36668 -12.90713 -12.75618 -12.46970 -12.38031 -12.12884 -12.12044 -11.81744 -11.58410 -11.17023 -11.04847 -11.03616 -10.59471 -10.56570 -10.26733 -10.12986 -9.83547 -9.78213 -9.46804 -9.37410 -8.59130 -8.36174 -7.64701 -6.94949 -5.93391 -3.98939 1.71874 1.77678 3.18889 3.36574 3.39748 3.44078 4.00479 4.41427 4.44189 4.50795 4.58364 5.00585 5.09255 5.19072 5.26562 5.36491 5.38130 5.43994 5.56931 5.60968 5.67727 5.71660 5.77241 5.84488 5.93172 6.01174 6.02517 6.05184 6.21101 6.31866 6.48870 6.60222 6.75428 7.18195 7.30574 7.42109 7.52753 7.95786 7.99493 8.32578 8.40747 8.58755 8.96682 9.12128 9.66343 11.11034 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.006264 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.962395 B = 4468.560885 C = 5272.440884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 N -0.708 5.708 4 C 0.570 3.430 5 N -0.585 5.585 6 C 0.204 3.796 7 C -0.099 4.099 8 C -0.287 4.287 9 C 0.499 3.501 10 N -0.633 5.633 11 C 0.278 3.722 12 C -0.519 4.519 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.902 5.902 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.140 3.860 21 C -0.205 4.205 22 C -0.204 4.204 23 N -0.573 5.573 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.411 0.589 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.033 0.967 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -12.249 9.772 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.348 5.348 4 C 0.211 3.789 5 N -0.311 5.311 6 C 0.058 3.942 7 C -0.156 4.156 8 C -0.315 4.315 9 C 0.261 3.739 10 N -0.358 5.358 11 C 0.160 3.840 12 C -0.558 4.558 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.542 5.542 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.205 1.205 20 C 0.034 3.966 21 C -0.243 4.243 22 C -0.244 4.244 23 N -0.298 5.298 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.248 0.752 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.128 -12.511 9.533 16.037 hybrid contribution -0.485 1.091 -0.500 1.294 sum -3.613 -11.420 9.033 15.003 Atomic orbital electron populations 1.22014 0.94987 1.02771 1.02559 1.21105 0.93250 0.82383 1.01861 1.44052 1.01503 1.08225 1.80984 1.19122 0.86668 0.84466 0.88613 1.67617 1.03387 1.35078 1.24989 1.21119 0.89811 0.94027 0.89285 1.20679 0.96904 0.95152 1.02884 1.22661 1.02217 0.93239 1.13420 1.17954 0.85372 0.86963 0.83610 1.45738 1.76534 1.08342 1.05149 1.18995 0.95805 0.91397 0.77844 1.21748 0.97520 1.30655 1.05914 0.91868 1.24967 0.96147 0.96696 0.96616 1.69920 1.26416 1.42560 1.15349 0.86621 0.83703 0.79630 0.77803 1.20283 1.21441 1.20504 1.21137 0.97798 0.96972 0.80724 1.23205 1.04701 0.97343 0.99057 1.23448 0.96781 0.98900 1.05279 1.67997 1.19904 1.20203 1.21681 0.90963 0.92130 0.91993 0.92027 0.92108 0.75235 0.90400 0.90590 0.90400 0.84495 0.94934 0.96059 0.92917 0.86329 0.90162 0.89001 0.89493 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.03 37.16 0.37 -1.10 16 2 C 0.14 1.66 6.37 -4.04 -0.03 1.64 16 3 N -0.71 -10.97 5.70 -62.32 -0.36 -11.32 16 4 C 0.57 10.81 8.42 -322.89 -2.72 8.09 16 5 N -0.59 -10.38 9.52 -10.24 -0.10 -10.48 16 6 C 0.20 3.35 6.81 -82.35 -0.56 2.79 16 7 C -0.10 -1.14 10.21 36.01 0.37 -0.77 16 8 C -0.29 -5.22 9.77 -39.10 -0.38 -5.60 16 9 C 0.50 10.55 4.51 -154.83 -0.70 9.85 16 10 N -0.63 -13.91 2.80 -167.46 -0.47 -14.38 16 11 C 0.28 7.23 5.48 -5.19 -0.03 7.20 16 12 C -0.52 -14.82 9.39 -34.44 -0.32 -15.14 16 13 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 C 0.14 2.65 6.56 -67.94 -0.45 2.20 16 21 C -0.20 -3.32 9.84 -26.69 -0.26 -3.58 16 22 C -0.20 -3.63 10.36 -26.70 -0.28 -3.90 16 23 N -0.57 -12.28 10.49 -13.17 -0.14 -12.42 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.41 6.09 8.59 -40.82 -0.35 5.74 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.14 2.25 8.06 -52.48 -0.42 1.83 16 34 H 0.03 0.86 8.07 -51.93 -0.42 0.45 16 35 H 0.02 0.60 8.04 -51.93 -0.42 0.18 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 38 H 0.08 1.42 7.07 -51.93 -0.37 1.05 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -32.02 349.47 -11.75 -43.78 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.59 Total: 5.10 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -5.08 Total: 3.20 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -0.32 Total: -74.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.02 -11.75 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131569600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.315 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds