Wall clock time and date at job start Mon Mar 30 2020 07:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47245 * 2 1 4 4 C 1.38395 * 119.99868 * 179.97438 * 3 2 1 5 5 N 1.32502 * 119.18061 * 359.97438 * 4 3 2 6 6 C 1.32485 * 120.93351 * 180.02562 * 5 4 3 7 7 C 1.50700 * 120.35423 * 180.27051 * 6 5 4 8 8 C 1.38128 * 119.28834 * 359.97438 * 6 5 4 9 9 C 1.39642 * 118.49487 * 0.02562 * 8 6 5 10 10 N 1.38530 * 120.48627 * 179.97438 * 9 8 6 11 11 C 1.46503 * 119.99612 * 87.97806 * 10 9 8 12 12 C 1.50700 * 109.46841 * 90.00075 * 11 10 9 13 13 H 1.08003 * 120.00446 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00079 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99725 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00126 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46929 * 60.00424 * 16 14 12 18 18 H 1.48501 * 109.46875 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47223 * 300.00035 * 16 14 12 20 20 C 1.46492 * 119.99985 * 267.97708 * 10 9 8 21 21 C 1.53000 * 117.50299 * 3.38763 * 20 10 9 22 22 C 1.52997 * 117.49908 * 294.72720 * 20 10 9 23 23 N 1.32436 * 119.17742 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46346 * 299.99826 * 1 2 3 26 26 H 1.08997 * 109.47041 * 59.99034 * 1 2 3 27 27 H 1.09003 * 109.47072 * 240.00336 * 2 1 3 28 28 H 1.08994 * 109.47334 * 120.00519 * 2 1 3 29 29 H 0.97001 * 120.00239 * 0.02562 * 3 2 1 30 30 H 1.08994 * 109.47128 * 269.71866 * 7 6 5 31 31 H 1.09007 * 109.46918 * 29.72404 * 7 6 5 32 32 H 1.09007 * 109.47007 * 149.71762 * 7 6 5 33 33 H 1.08009 * 120.75030 * 180.02562 * 8 6 5 34 34 H 1.09005 * 109.46940 * 209.99336 * 11 10 9 35 35 H 1.08993 * 109.47388 * 329.99795 * 11 10 9 36 36 H 0.96994 * 120.00315 * 180.02562 * 15 14 12 37 37 H 1.09000 * 115.54826 * 149.05676 * 20 10 9 38 38 H 1.09007 * 117.49472 * 359.97438 * 21 20 10 39 39 H 1.08997 * 117.50352 * 145.01368 * 21 20 10 40 40 H 1.09002 * 117.49919 * 214.97742 * 22 20 10 41 41 H 1.08998 * 117.49873 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3791 1.6340 0.0005 5 7 4.2256 0.6147 0.0016 6 6 5.5349 0.8167 0.0026 7 6 6.4859 -0.3523 -0.0024 8 6 6.0190 2.1104 0.0021 9 6 5.1030 3.1645 0.0010 10 7 5.5431 4.4780 0.0010 11 6 5.8193 5.1579 -1.2670 12 6 4.5677 5.8421 -1.7531 13 1 3.6574 5.7767 -1.1756 14 6 4.5846 6.5517 -2.9352 15 7 5.6929 6.6309 -3.6387 16 14 3.0329 7.3992 -3.5381 17 1 2.5882 8.3938 -2.5290 18 1 3.3129 8.0884 -4.8233 19 1 1.9641 6.3886 -3.7416 20 6 5.7323 5.1871 1.2688 21 6 5.5036 4.3990 2.5601 22 6 4.4896 5.4576 2.1193 23 7 3.8026 2.8889 0.0000 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.3881 2.1185 0.0004 30 1 6.7190 -0.6354 1.0240 31 1 6.0229 -1.1951 -0.5157 32 1 7.4037 -0.0718 -0.5193 33 1 7.0819 2.3024 0.0025 34 1 6.6043 5.8994 -1.1182 35 1 6.1451 4.4275 -2.0075 36 1 5.7049 7.1304 -4.4701 37 1 6.5187 5.9419 1.2725 38 1 5.2119 3.3529 2.4663 39 1 6.1392 4.6355 3.4134 40 1 4.4585 6.3901 2.6828 41 1 3.5313 5.1075 1.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131569600.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:09 Heat of formation + Delta-G solvation = 75.994948 kcal Electronic energy + Delta-G solvation = -21660.992201 eV Core-core repulsion = 18576.680661 eV Total energy + Delta-G solvation = -3084.311540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87459 -39.06214 -37.32424 -35.72807 -34.98517 -33.95254 -32.20409 -30.50339 -29.28713 -28.20772 -25.11443 -24.24333 -23.62101 -23.31459 -23.11787 -20.89965 -18.84535 -18.27750 -18.20605 -17.40457 -16.79247 -16.36897 -16.21544 -16.05497 -15.77666 -15.33228 -14.87871 -14.48998 -14.06533 -13.84488 -13.76510 -13.25634 -13.16620 -13.05869 -12.98989 -12.68820 -12.56455 -12.52254 -12.38727 -12.21840 -12.15897 -11.71881 -11.37138 -11.23437 -11.09007 -10.93039 -10.59761 -10.05971 -8.96293 -8.70353 -8.06932 -6.27877 0.27207 0.37574 1.35004 1.37078 1.45372 1.92681 2.35618 2.51385 2.99262 3.04318 3.11950 3.34737 3.88098 3.97164 4.04886 4.14801 4.21370 4.25422 4.30777 4.44089 4.54259 4.63027 4.72179 4.82236 4.89046 4.91239 4.96570 5.02544 5.06893 5.08243 5.16062 5.22572 5.23621 5.31135 5.44576 5.72772 6.00272 6.19583 6.25854 6.51950 6.60375 6.89420 6.98257 7.42314 7.55242 8.88921 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.006264 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.962395 B = 4468.560885 C = 5272.440884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.704 5.704 4 C 0.555 3.445 5 N -0.585 5.585 6 C 0.208 3.792 7 C -0.093 4.093 8 C -0.297 4.297 9 C 0.472 3.528 10 N -0.639 5.639 11 C 0.297 3.703 12 C -0.530 4.530 13 H 0.046 0.954 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.956 3.044 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.281 1.281 20 C 0.112 3.888 21 C -0.169 4.169 22 C -0.207 4.207 23 N -0.610 5.610 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.411 0.589 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.021 0.979 35 H -0.008 1.008 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -13.374 10.783 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.014 3.986 3 N -0.343 5.343 4 C 0.196 3.804 5 N -0.311 5.311 6 C 0.061 3.939 7 C -0.150 4.150 8 C -0.325 4.325 9 C 0.236 3.764 10 N -0.364 5.364 11 C 0.176 3.824 12 C -0.569 4.569 13 H 0.064 0.936 14 C -0.189 4.189 15 N -0.570 5.570 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.207 1.207 20 C 0.006 3.994 21 C -0.207 4.207 22 C -0.247 4.247 23 N -0.336 5.336 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.248 0.752 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.168 0.832 34 H 0.039 0.961 35 H 0.010 0.990 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.147 0.853 40 H 0.128 0.872 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.497 -13.657 10.575 17.623 hybrid contribution -0.394 1.351 -0.787 1.612 sum -3.891 -12.306 9.788 16.198 Atomic orbital electron populations 1.21969 0.92370 1.04338 1.02663 1.21296 0.95321 0.80415 1.01544 1.44343 1.00369 1.09723 1.79858 1.19528 0.88087 0.84180 0.88638 1.67787 1.03892 1.34283 1.25146 1.21934 0.90087 0.95026 0.86864 1.20816 0.96228 0.93210 1.04764 1.22794 1.02445 0.93351 1.13906 1.18241 0.85993 0.87033 0.85139 1.45525 1.77017 1.09039 1.04782 1.18474 0.94393 0.90250 0.79266 1.21905 0.97715 1.31154 1.06173 0.93619 1.25727 0.99148 0.97293 0.96714 1.70016 1.28131 1.43136 1.15701 0.85649 0.79851 0.78593 0.77747 1.19396 1.20270 1.20731 1.21435 0.98849 0.98495 0.80619 1.23161 1.03363 0.95889 0.98281 1.23385 0.95187 1.00598 1.05495 1.67909 1.20498 1.21764 1.23474 0.88597 0.91635 0.92246 0.92684 0.91906 0.75238 0.87969 0.89683 0.88684 0.83197 0.96063 0.99020 0.92627 0.85290 0.91676 0.85323 0.87172 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.03 71.98 0.72 -1.78 16 2 C 0.14 3.17 6.37 86.38 0.55 3.72 16 3 N -0.70 -21.88 5.70 -351.09 -2.00 -23.89 16 4 C 0.55 21.29 8.42 261.51 2.20 23.50 16 5 N -0.59 -20.43 9.52 -186.31 -1.77 -22.20 16 6 C 0.21 6.61 6.81 42.43 0.29 6.90 16 7 C -0.09 -1.89 10.21 71.24 0.73 -1.16 16 8 C -0.30 -10.79 9.77 22.58 0.22 -10.57 16 9 C 0.47 20.49 4.51 133.19 0.60 21.09 16 10 N -0.64 -28.99 2.80 -683.73 -1.92 -30.91 16 11 C 0.30 16.08 5.48 85.63 0.47 16.55 16 12 C -0.53 -31.24 9.39 25.60 0.24 -31.00 16 13 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 14 C 0.01 0.55 5.46 84.66 0.46 1.01 16 15 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 16 Si 0.96 46.36 29.54 68.60 2.03 48.38 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 20 C 0.11 4.22 6.56 44.99 0.30 4.52 16 21 C -0.17 -5.26 9.84 30.62 0.30 -4.96 16 22 C -0.21 -7.32 10.36 30.62 0.32 -7.00 16 23 N -0.61 -27.00 10.49 -195.57 -2.05 -29.05 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.41 12.39 8.59 -92.71 -0.80 11.60 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.09 1.64 8.09 -2.38 -0.02 1.62 16 33 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 35 H -0.01 -0.48 8.04 -2.39 -0.02 -0.50 16 36 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.13 4.49 8.14 -2.39 -0.02 4.47 16 38 H 0.06 2.26 7.07 -2.38 -0.02 2.24 16 39 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -71.20 349.47 2.18 -69.02 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.22 Total: 23.63 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.40 Total: 20.82 kcal Atomic # 7 Polarization: -154.38 SS G_CDS: -7.46 Total: -161.84 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.20 2.18 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131569600.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.011 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds