Wall clock time and date at job start Mon Mar 30 2020 07:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47273 * 2 1 4 4 C 1.52999 * 109.46976 * 239.99085 * 2 1 3 5 5 C 1.50707 * 109.46999 * 65.00241 * 4 2 1 6 6 O 1.21286 * 119.99914 * 0.02562 * 5 4 2 7 7 N 1.34766 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00506 * 0.02562 * 7 5 4 9 9 C 1.46501 * 120.00033 * 180.02562 * 7 5 4 10 10 C 1.50700 * 109.47228 * 89.99878 * 9 7 5 11 11 H 1.07994 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00152 * 180.02562 * 10 9 7 13 13 N 1.31523 * 120.00068 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47029 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47210 * 119.99926 * 14 12 10 17 17 H 1.48501 * 109.47677 * 239.99911 * 14 12 10 18 18 C 1.50697 * 109.46651 * 119.99742 * 2 1 3 19 19 C 1.38293 * 119.92423 * 239.99682 * 18 2 1 20 20 C 1.38103 * 120.07544 * 179.97438 * 19 18 2 21 21 C 1.38914 * 119.92585 * 0.02562 * 20 19 18 22 22 N 1.39671 * 120.07130 * 179.97438 * 21 20 19 23 23 C 1.38912 * 119.84788 * 0.25342 * 21 20 19 24 24 C 1.38098 * 119.92495 * 359.48977 * 23 21 20 25 25 H 1.09004 * 109.46897 * 300.01065 * 1 2 3 26 26 H 1.09003 * 109.46952 * 60.00250 * 1 2 3 27 27 H 1.09001 * 109.47551 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47153 * 185.00257 * 4 2 1 29 29 H 1.09003 * 109.47178 * 305.00653 * 4 2 1 30 30 H 1.09003 * 109.46974 * 89.99701 * 8 7 5 31 31 H 1.09000 * 109.47461 * 209.99965 * 8 7 5 32 32 H 1.09001 * 109.46544 * 330.00067 * 8 7 5 33 33 H 1.08997 * 109.47547 * 210.00175 * 9 7 5 34 34 H 1.08997 * 109.47200 * 329.99856 * 9 7 5 35 35 H 0.96998 * 119.99737 * 180.02562 * 13 12 10 36 36 H 1.08001 * 119.95818 * 359.97438 * 19 18 2 37 37 H 1.07999 * 120.03434 * 180.02562 * 20 19 18 38 38 H 0.97001 * 120.00529 * 0.02562 * 22 21 20 39 39 H 0.97005 * 119.99745 * 179.72366 * 22 21 20 40 40 H 1.08005 * 120.03088 * 179.72680 * 23 21 20 41 41 H 1.08005 * 119.96252 * 180.25688 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0567 -2.4766 6 8 1.0117 1.0872 -2.3634 7 7 1.9853 -0.3918 -3.7000 8 6 2.7462 -1.6362 -3.8368 9 6 1.5982 0.3649 -4.8932 10 6 2.6795 1.3590 -5.2303 11 1 3.5666 1.4206 -4.6174 12 6 2.5365 2.1898 -6.3213 13 7 1.4560 2.1152 -7.0675 14 14 3.8765 3.4224 -6.7388 15 1 4.9795 3.3078 -5.7512 16 1 4.4003 3.1422 -8.0998 17 1 3.3154 4.7967 -6.6976 18 6 2.0322 -0.7104 1.2305 19 6 2.8272 -0.0368 2.1398 20 6 3.2887 -0.6846 3.2688 21 6 2.9540 -2.0145 3.4903 22 7 3.4195 -2.6727 4.6308 23 6 2.1601 -2.6897 2.5719 24 6 1.6976 -2.0344 1.4478 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1262 -0.7997 -1.2055 29 1 1.6053 -1.7200 -1.2949 30 1 2.0568 -2.4761 -3.9228 31 1 3.3694 -1.5848 -4.7297 32 1 3.3786 -1.7736 -2.9597 33 1 1.4611 -0.3204 -5.7296 34 1 0.6651 0.8944 -4.7008 35 1 1.3555 2.6994 -7.8353 36 1 3.0874 0.9970 1.9667 37 1 3.9092 -0.1578 3.9786 38 1 3.9769 -2.2012 5.2694 39 1 3.1818 -3.6002 4.7864 40 1 1.9017 -3.7250 2.7390 41 1 1.0768 -2.5577 0.7355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164515218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:47 Heat of formation + Delta-G solvation = -23.266596 kcal Electronic energy + Delta-G solvation = -20957.960985 eV Core-core repulsion = 17837.052390 eV Total energy + Delta-G solvation = -3120.908595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80083 -38.80919 -35.90026 -34.69125 -33.05581 -32.51580 -30.89426 -28.76421 -27.68820 -26.95854 -25.50088 -23.33676 -22.86013 -22.15141 -20.01487 -18.18306 -17.28191 -16.95185 -16.50144 -16.30840 -15.22985 -15.02391 -14.92223 -14.35722 -14.01382 -13.86470 -13.45614 -13.36849 -13.09262 -12.69080 -12.61709 -12.32493 -12.13204 -11.83720 -11.50459 -11.21940 -11.16792 -11.05400 -10.82152 -10.68741 -10.53371 -10.38097 -10.28774 -10.11526 -9.54781 -8.92912 -8.71695 -8.40277 -7.55367 -7.51841 -6.00714 -4.05130 1.43639 1.59469 3.32067 3.39355 3.43330 3.55511 3.70106 3.85029 4.10010 4.48290 4.82323 4.94961 4.99245 5.21256 5.32500 5.39322 5.44391 5.51669 5.56081 5.65923 5.76955 5.87828 5.91970 5.98584 6.03865 6.10573 6.24292 6.26335 6.31454 6.43517 6.48830 6.75518 6.85052 6.90101 7.12745 7.36003 7.50287 7.55835 7.62128 7.96526 8.28410 8.51505 8.95757 9.20162 9.60114 11.07355 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.003459 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.459027 B = 8093.898749 C = 8284.411210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.083 0.917 4 C -0.131 4.131 5 C 0.504 3.496 6 O -0.540 6.540 7 N -0.605 5.605 8 C 0.084 3.916 9 C 0.244 3.756 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.124 4.124 19 C -0.068 4.068 20 C -0.197 4.197 21 C 0.204 3.796 22 N -0.884 5.884 23 C -0.197 4.197 24 C -0.066 4.066 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.395 0.605 39 H 0.395 0.605 40 H 0.116 0.884 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -11.831 20.028 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 H 0.101 0.899 4 C -0.171 4.171 5 C 0.291 3.709 6 O -0.418 6.418 7 N -0.337 5.337 8 C -0.060 4.060 9 C 0.125 3.875 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.126 4.126 19 C -0.086 4.086 20 C -0.220 4.220 21 C 0.100 3.900 22 N -0.423 5.423 23 C -0.220 4.220 24 C -0.084 4.084 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.223 0.777 39 H 0.223 0.777 40 H 0.134 0.866 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.682 -11.188 19.850 22.943 hybrid contribution 1.013 0.359 -0.021 1.075 sum 3.696 -10.828 19.828 22.893 Atomic orbital electron populations 1.21948 0.94180 1.01174 1.03058 1.19771 0.96387 0.99033 0.89635 0.89877 1.21776 1.02263 0.99827 0.93235 1.20376 0.80318 0.85813 0.84429 1.90622 1.40661 1.24432 1.86097 1.48173 1.53891 1.23932 1.07735 1.21623 0.95634 0.86394 1.02379 1.19268 0.96949 0.90836 0.80457 1.21487 1.04500 1.19029 1.11208 0.92457 1.24945 0.95908 0.97227 0.96136 1.69950 1.26790 1.39288 1.17480 0.86449 0.81801 0.81220 0.77989 1.19811 1.21014 1.20883 1.19755 1.00808 0.94501 0.97533 1.20870 0.95457 0.99412 0.92899 1.20537 1.07099 0.93653 1.00678 1.17771 0.93154 0.91719 0.87317 1.42434 1.59989 1.15320 1.24573 1.20533 1.04615 1.00033 0.96776 1.20758 0.97631 0.93987 0.96073 0.93290 0.90018 0.93622 0.89615 0.89839 0.93887 0.90942 0.92415 0.95174 0.93843 0.92826 0.86080 0.86602 0.77706 0.77712 0.86612 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.75 37.16 0.33 -1.84 16 2 C -0.03 -0.43 2.21 -91.77 -0.20 -0.63 16 3 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 4 C -0.13 -1.99 3.47 -27.88 -0.10 -2.09 16 5 C 0.50 10.50 7.39 -10.99 -0.08 10.42 16 6 O -0.54 -13.38 13.55 5.55 0.08 -13.30 16 7 N -0.61 -13.07 2.86 -182.95 -0.52 -13.59 16 8 C 0.08 1.36 10.24 59.85 0.61 1.98 16 9 C 0.24 6.51 5.16 -5.19 -0.03 6.48 16 10 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 14 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 C -0.12 -1.57 4.78 -104.59 -0.50 -2.07 16 19 C -0.07 -0.81 9.66 -39.61 -0.38 -1.19 16 20 C -0.20 -2.10 9.90 -39.38 -0.39 -2.49 16 21 C 0.20 2.04 6.75 -83.79 -0.57 1.48 16 22 N -0.88 -6.01 9.09 32.41 0.29 -5.72 16 23 C -0.20 -2.04 9.90 -39.38 -0.39 -2.42 16 24 C -0.07 -0.75 8.75 -39.62 -0.35 -1.10 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 27 H 0.04 0.59 7.38 -51.93 -0.38 0.21 16 28 H 0.09 1.22 7.40 -51.93 -0.38 0.84 16 29 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 36 H 0.12 1.35 7.94 -52.49 -0.42 0.93 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.40 2.04 8.84 -40.82 -0.36 1.68 16 39 H 0.40 2.00 8.84 -40.82 -0.36 1.64 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.12 1.24 7.15 -52.48 -0.38 0.87 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -33.77 338.68 -7.97 -41.74 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.17 Total: 2.15 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.46 Total: -7.27 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.51 Total: -45.56 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.77 -7.97 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164515218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.474 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds