Wall clock time and date at job start Mon Mar 30 2020 07:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47273 * 2 1 4 4 C 1.52999 * 109.46976 * 239.99085 * 2 1 3 5 5 C 1.50707 * 109.46999 * 65.00241 * 4 2 1 6 6 O 1.21286 * 119.99914 * 0.02562 * 5 4 2 7 7 N 1.34766 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00506 * 0.02562 * 7 5 4 9 9 C 1.46501 * 120.00033 * 180.02562 * 7 5 4 10 10 C 1.50700 * 109.47228 * 89.99878 * 9 7 5 11 11 H 1.07994 * 120.00172 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00152 * 180.02562 * 10 9 7 13 13 N 1.31523 * 120.00068 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00202 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47029 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47210 * 119.99926 * 14 12 10 17 17 H 1.48501 * 109.47677 * 239.99911 * 14 12 10 18 18 C 1.50697 * 109.46651 * 119.99742 * 2 1 3 19 19 C 1.38293 * 119.92423 * 239.99682 * 18 2 1 20 20 C 1.38103 * 120.07544 * 179.97438 * 19 18 2 21 21 C 1.38914 * 119.92585 * 0.02562 * 20 19 18 22 22 N 1.39671 * 120.07130 * 179.97438 * 21 20 19 23 23 C 1.38912 * 119.84788 * 0.25342 * 21 20 19 24 24 C 1.38098 * 119.92495 * 359.48977 * 23 21 20 25 25 H 1.09004 * 109.46897 * 300.01065 * 1 2 3 26 26 H 1.09003 * 109.46952 * 60.00250 * 1 2 3 27 27 H 1.09001 * 109.47551 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47153 * 185.00257 * 4 2 1 29 29 H 1.09003 * 109.47178 * 305.00653 * 4 2 1 30 30 H 1.09003 * 109.46974 * 89.99701 * 8 7 5 31 31 H 1.09000 * 109.47461 * 209.99965 * 8 7 5 32 32 H 1.09001 * 109.46544 * 330.00067 * 8 7 5 33 33 H 1.08997 * 109.47547 * 210.00175 * 9 7 5 34 34 H 1.08997 * 109.47200 * 329.99856 * 9 7 5 35 35 H 0.96998 * 119.99737 * 180.02562 * 13 12 10 36 36 H 1.08001 * 119.95818 * 359.97438 * 19 18 2 37 37 H 1.07999 * 120.03434 * 180.02562 * 20 19 18 38 38 H 0.97001 * 120.00529 * 0.02562 * 22 21 20 39 39 H 0.97005 * 119.99745 * 179.72366 * 22 21 20 40 40 H 1.08005 * 120.03088 * 179.72680 * 23 21 20 41 41 H 1.08005 * 119.96252 * 180.25688 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6413 0.0567 -2.4766 6 8 1.0117 1.0872 -2.3634 7 7 1.9853 -0.3918 -3.7000 8 6 2.7462 -1.6362 -3.8368 9 6 1.5982 0.3649 -4.8932 10 6 2.6795 1.3590 -5.2303 11 1 3.5666 1.4206 -4.6174 12 6 2.5365 2.1898 -6.3213 13 7 1.4560 2.1152 -7.0675 14 14 3.8765 3.4224 -6.7388 15 1 4.9795 3.3078 -5.7512 16 1 4.4003 3.1422 -8.0998 17 1 3.3154 4.7967 -6.6976 18 6 2.0322 -0.7104 1.2305 19 6 2.8272 -0.0368 2.1398 20 6 3.2887 -0.6846 3.2688 21 6 2.9540 -2.0145 3.4903 22 7 3.4195 -2.6727 4.6308 23 6 2.1601 -2.6897 2.5719 24 6 1.6976 -2.0344 1.4478 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1262 -0.7997 -1.2055 29 1 1.6053 -1.7200 -1.2949 30 1 2.0568 -2.4761 -3.9228 31 1 3.3694 -1.5848 -4.7297 32 1 3.3786 -1.7736 -2.9597 33 1 1.4611 -0.3204 -5.7296 34 1 0.6651 0.8944 -4.7008 35 1 1.3555 2.6994 -7.8353 36 1 3.0874 0.9970 1.9667 37 1 3.9092 -0.1578 3.9786 38 1 3.9769 -2.2012 5.2694 39 1 3.1818 -3.6002 4.7864 40 1 1.9017 -3.7250 2.7390 41 1 1.0768 -2.5577 0.7355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164515218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:47 Heat of formation + Delta-G solvation = -45.160005 kcal Electronic energy + Delta-G solvation = -20958.910355 eV Core-core repulsion = 17837.052390 eV Total energy + Delta-G solvation = -3121.857964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98572 -40.08268 -37.03307 -36.31071 -34.72249 -33.93750 -31.68890 -30.44442 -28.75683 -28.36325 -27.14167 -24.93379 -23.89486 -23.29622 -21.11175 -19.73543 -18.68374 -18.18209 -17.72289 -17.55515 -16.99585 -16.45817 -16.14473 -15.97942 -15.20132 -14.79267 -14.58436 -14.43627 -14.20789 -14.02059 -13.88692 -13.73881 -13.61497 -13.40324 -13.12997 -12.87280 -12.77209 -12.56525 -12.19341 -12.11103 -12.08804 -11.79179 -11.64153 -11.44570 -11.14809 -10.64519 -10.41146 -9.73675 -9.35005 -8.25228 -8.21676 -6.36815 0.63108 0.75841 1.35966 1.38487 1.50510 1.92865 2.34879 2.51897 3.04872 3.07217 3.12505 3.74717 3.89135 4.18580 4.20539 4.25657 4.30570 4.45232 4.60541 4.65177 4.70294 4.75847 4.76712 4.94046 4.99070 5.01569 5.05607 5.15010 5.25346 5.26675 5.33034 5.44234 5.51633 5.59037 5.67757 5.88478 5.97291 6.07924 6.08575 6.70005 6.71691 6.85921 7.08978 7.29860 7.57139 8.85240 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029829 B = 0.003459 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.459027 B = 8093.898749 C = 8284.411210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.023 4.023 3 H 0.056 0.944 4 C -0.114 4.114 5 C 0.493 3.507 6 O -0.590 6.590 7 N -0.615 5.615 8 C 0.079 3.921 9 C 0.258 3.742 10 C -0.541 4.541 11 H 0.052 0.948 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.268 1.268 17 H -0.281 1.281 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.206 4.206 21 C 0.206 3.794 22 N -0.871 5.871 23 C -0.202 4.202 24 C -0.068 4.068 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.021 0.979 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.405 0.595 39 H 0.406 0.594 40 H 0.138 0.862 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.902 -13.771 21.852 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 H 0.074 0.926 4 C -0.153 4.153 5 C 0.283 3.717 6 O -0.472 6.472 7 N -0.346 5.346 8 C -0.064 4.064 9 C 0.137 3.863 10 C -0.579 4.579 11 H 0.070 0.930 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.193 1.193 17 H -0.207 1.207 18 C -0.142 4.142 19 C -0.099 4.099 20 C -0.229 4.229 21 C 0.100 3.900 22 N -0.411 5.411 23 C -0.225 4.225 24 C -0.086 4.086 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.039 0.961 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.234 0.766 39 H 0.235 0.765 40 H 0.155 0.845 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.498 -13.190 21.712 25.799 hybrid contribution 0.431 0.908 -0.501 1.123 sum 4.928 -12.282 21.211 25.001 Atomic orbital electron populations 1.21864 0.94646 1.01927 1.01392 1.19626 0.96003 0.97929 0.90668 0.92570 1.21756 1.03369 1.00150 0.90070 1.21439 0.79141 0.85588 0.85555 1.90602 1.42764 1.26922 1.86892 1.48225 1.54543 1.25278 1.06559 1.21915 0.96147 0.84604 1.03685 1.18730 0.94658 0.90634 0.82299 1.21745 1.04738 1.20017 1.11449 0.92995 1.25882 0.98355 0.99139 0.95933 1.70065 1.28655 1.40258 1.17980 0.85354 0.78757 0.78211 0.78395 1.19146 1.19324 1.20727 1.19509 1.02435 0.95222 0.97016 1.20961 0.95827 0.99563 0.93557 1.20713 1.07398 0.94239 1.00564 1.17922 0.92513 0.91591 0.87962 1.42433 1.59249 1.15842 1.23605 1.20785 1.04319 1.01059 0.96328 1.20889 0.97608 0.93358 0.96788 0.92739 0.93784 0.91584 0.87849 0.86707 0.91093 0.91781 0.88948 0.96051 0.98443 0.92413 0.86414 0.85086 0.76621 0.76463 0.84457 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.75 71.98 0.63 -3.58 16 2 C -0.02 -0.68 2.21 -11.54 -0.03 -0.70 16 3 H 0.06 1.91 7.68 -2.39 -0.02 1.89 16 4 C -0.11 -3.31 3.47 29.85 0.10 -3.20 16 5 C 0.49 20.92 7.39 87.66 0.65 21.57 16 6 O -0.59 -30.90 13.55 -3.05 -0.04 -30.94 16 7 N -0.61 -26.83 2.86 -851.13 -2.43 -29.26 16 8 C 0.08 2.41 10.24 127.77 1.31 3.72 16 9 C 0.26 14.37 5.16 85.63 0.44 14.81 16 10 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 11 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 14 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 C -0.14 -3.33 4.78 -19.84 -0.09 -3.43 16 19 C -0.08 -1.84 9.66 22.25 0.21 -1.62 16 20 C -0.21 -3.96 9.90 22.40 0.22 -3.73 16 21 C 0.21 3.49 6.75 38.22 0.26 3.75 16 22 N -0.87 -8.88 9.09 -51.37 -0.47 -9.34 16 23 C -0.20 -3.50 9.90 22.40 0.22 -3.28 16 24 C -0.07 -1.36 8.75 22.25 0.19 -1.16 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.65 5.95 -2.39 -0.01 1.63 16 27 H 0.07 1.65 7.38 -2.39 -0.02 1.63 16 28 H 0.10 2.68 7.40 -2.39 -0.02 2.66 16 29 H 0.11 2.64 7.53 -2.39 -0.02 2.62 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 32 H 0.09 2.19 6.44 -2.39 -0.02 2.17 16 33 H 0.02 1.20 8.07 -2.39 -0.02 1.19 16 34 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.12 2.64 7.94 -2.91 -0.02 2.62 16 37 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.40 2.85 8.84 -92.71 -0.82 2.03 16 39 H 0.41 2.63 8.84 -92.70 -0.82 1.81 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 41 H 0.13 2.26 7.15 -2.91 -0.02 2.24 16 Total: -1.00 -76.59 338.68 3.60 -73.00 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -0.60 Total: 13.63 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.82 Total: -7.86 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -2.61 Total: -95.71 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.04 Total: -30.94 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -76.59 3.60 -73.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164515218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.835 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds