Wall clock time and date at job start Mon Mar 30 2020 06:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.98765 * 2 1 4 4 O 1.43737 * 109.87888 * 121.08394 * 2 1 3 5 5 C 1.44380 * 106.97963 * 145.93569 * 4 2 1 6 6 C 1.54999 * 103.48761 * 319.94313 * 5 4 2 7 7 C 1.54097 * 109.87793 * 238.91537 * 2 1 3 8 8 C 1.52994 * 110.49049 * 357.22188 * 7 2 1 9 9 N 1.46500 * 110.48914 * 119.86966 * 7 2 1 10 10 C 1.39848 * 120.00227 * 177.96107 * 9 7 2 11 11 C 1.39606 * 119.83973 * 352.63683 * 10 9 7 12 12 C 1.38064 * 120.54780 * 179.71452 * 11 10 9 13 13 C 1.38732 * 120.21935 * 0.56082 * 12 11 10 14 14 N 1.38866 * 120.16281 * 179.74478 * 13 12 11 15 15 C 1.41561 * 119.67386 * 359.71847 * 13 12 11 16 16 C 1.41038 * 120.26452 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99777 * 329.59382 * 16 15 13 18 18 C 1.39882 * 119.99735 * 149.60286 * 16 15 13 19 19 N 1.30899 * 120.00060 * 161.40843 * 18 16 15 20 20 Si 1.86800 * 120.00248 * 341.39593 * 18 16 15 21 21 H 1.48500 * 109.46852 * 94.55184 * 20 18 16 22 22 H 1.48493 * 109.47520 * 214.55583 * 20 18 16 23 23 H 1.48504 * 109.47337 * 334.56182 * 20 18 16 24 24 C 1.38009 * 119.84307 * 172.91095 * 10 9 7 25 25 H 1.08997 * 109.47156 * 300.36833 * 1 2 3 26 26 H 1.09003 * 109.46930 * 60.36879 * 1 2 3 27 27 H 1.09002 * 109.47209 * 180.36806 * 1 2 3 28 28 H 1.08993 * 110.62107 * 201.43978 * 5 4 2 29 29 H 1.08998 * 110.61525 * 78.43952 * 5 4 2 30 30 H 1.09001 * 110.90400 * 155.21848 * 6 5 4 31 31 H 1.08998 * 110.90359 * 278.81896 * 6 5 4 32 32 H 1.09000 * 109.47673 * 299.81183 * 8 7 2 33 33 H 1.09006 * 109.47337 * 59.80956 * 8 7 2 34 34 H 1.09002 * 109.47803 * 179.81055 * 8 7 2 35 35 H 0.97001 * 119.99811 * 357.96539 * 9 7 2 36 36 H 1.08002 * 119.72499 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.88573 * 180.27728 * 12 11 10 38 38 H 0.96994 * 120.00313 * 185.24396 * 14 13 12 39 39 H 0.97007 * 119.99751 * 5.24318 * 14 13 12 40 40 H 0.96999 * 120.00432 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.10951 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 1.1576 5 6 3.2379 -1.3642 0.7648 6 6 2.9195 -1.8915 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 6 0.8899 -1.3190 -2.0534 9 7 2.8711 0.1419 -2.0695 10 6 3.4833 -0.3471 -3.2278 11 6 3.4432 -1.7136 -3.5107 12 6 4.0376 -2.2115 -4.6530 13 6 4.6930 -1.3575 -5.5281 14 7 5.2951 -1.8602 -6.6740 15 6 4.7444 0.0291 -5.2474 16 6 5.4078 0.9085 -6.1282 17 1 6.2522 0.5603 -6.7045 18 6 4.9721 2.2316 -6.2552 19 7 5.7678 3.1366 -6.7663 20 14 3.2544 2.7072 -5.6956 21 1 3.3123 3.2231 -4.3043 22 1 2.7156 3.7610 -6.5924 23 1 2.3699 1.5153 -5.7450 24 6 4.1292 0.5226 -4.0828 25 1 -0.3633 0.5195 0.8866 26 1 -0.3633 0.5081 -0.8933 27 1 -0.3634 -1.0277 0.0066 28 1 3.4584 -2.1907 1.4401 29 1 4.0685 -0.6589 0.7356 30 1 3.8332 -2.0224 -1.2374 31 1 2.3540 -2.8220 -0.6098 32 1 0.3233 -2.0162 -1.4360 33 1 0.2384 -0.5065 -2.3751 34 1 1.2784 -1.8411 -2.9278 35 1 2.9875 1.0706 -1.8145 36 1 2.9386 -2.3862 -2.8329 37 1 3.9962 -3.2699 -4.8637 38 1 5.8170 -1.2746 -7.2445 39 1 5.1937 -2.7972 -6.9040 40 1 5.4656 4.0540 -6.8548 41 1 4.1624 1.5785 -3.8582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235675570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:05 Heat of formation + Delta-G solvation = -13.707714 kcal Electronic energy + Delta-G solvation = -22217.101214 eV Core-core repulsion = 19096.607123 eV Total energy + Delta-G solvation = -3120.494091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23731 -38.04614 -35.60671 -33.41739 -33.06376 -31.56497 -30.65101 -30.12590 -27.42969 -26.55605 -24.87628 -24.35898 -22.24918 -21.36208 -20.01415 -19.16522 -17.43555 -16.78640 -15.94943 -15.87122 -15.65401 -15.34298 -14.94490 -14.43958 -14.06927 -13.81607 -13.10412 -13.05499 -12.83636 -12.66640 -12.39335 -12.13690 -12.01099 -11.89850 -11.54006 -11.41842 -11.09944 -10.98239 -10.78426 -10.71653 -10.51587 -10.46313 -10.01265 -9.73660 -9.63828 -9.47974 -9.03152 -7.98702 -7.51796 -6.82911 -5.85190 -4.21494 2.73453 2.99799 3.18822 3.34395 3.42080 3.82424 4.09227 4.10963 4.59116 4.68075 4.83630 4.98541 5.13279 5.26088 5.29650 5.35353 5.54732 5.55275 5.66176 5.78118 5.86902 5.95667 5.96563 6.06105 6.09907 6.13960 6.31226 6.36754 6.54704 6.72275 6.78510 6.90833 7.14559 7.27215 7.39448 7.52125 7.71225 7.95547 8.27661 8.42325 8.56159 8.63108 8.86977 9.05383 9.11798 10.20538 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.006082 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.797072 B = 4602.459898 C = 5344.949234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 H 0.068 0.932 4 O -0.377 6.377 5 C 0.047 3.953 6 C -0.170 4.170 7 C 0.165 3.835 8 C -0.165 4.165 9 N -0.752 5.752 10 C 0.200 3.800 11 C -0.261 4.261 12 C -0.147 4.147 13 C 0.100 3.900 14 N -0.886 5.886 15 C 0.081 3.919 16 C -0.451 4.451 17 H 0.086 0.914 18 C 0.085 3.915 19 N -0.821 5.821 20 Si 0.916 3.084 21 H -0.276 1.276 22 H -0.298 1.298 23 H -0.246 1.246 24 C -0.272 4.272 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.387 0.613 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.392 0.608 39 H 0.377 0.623 40 H 0.281 0.719 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 -6.543 9.441 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.086 0.914 4 O -0.296 6.296 5 C -0.029 4.029 6 C -0.209 4.209 7 C 0.076 3.924 8 C -0.223 4.223 9 N -0.387 5.387 10 C 0.101 3.899 11 C -0.284 4.284 12 C -0.171 4.171 13 C -0.002 4.002 14 N -0.428 5.428 15 C 0.075 3.925 16 C -0.481 4.481 17 H 0.104 0.896 18 C -0.132 4.132 19 N -0.447 5.447 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.170 1.170 24 C -0.296 4.296 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.221 0.779 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.221 0.779 39 H 0.202 0.798 40 H 0.091 0.909 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.716 -6.398 9.646 13.911 hybrid contribution -0.296 0.684 -0.226 0.779 sum -8.012 -5.714 9.420 13.623 Atomic orbital electron populations 1.22008 0.93435 1.02998 1.02145 1.22883 0.95247 0.95635 0.84690 0.91413 1.88846 1.40028 1.67830 1.32921 1.23545 0.87476 0.96207 0.95676 1.23781 1.02463 0.98425 0.96225 1.21185 0.90787 0.90213 0.90177 1.22462 0.97321 1.01261 1.01270 1.44551 1.56771 1.11188 1.26178 1.17264 0.94049 0.92515 0.86058 1.19939 1.14097 0.92692 1.01691 1.19838 1.04788 0.96431 0.96081 1.17774 1.00452 0.92714 0.89267 1.41870 1.61803 1.11303 1.27819 1.17128 0.92828 0.90310 0.92193 1.19074 1.13767 0.93529 1.21682 0.89644 1.26043 0.99237 0.95593 0.92327 1.69740 1.36153 1.03083 1.35698 0.86224 0.83211 0.78648 0.77497 1.20251 1.22630 1.16970 1.20232 1.14195 0.97386 0.97825 0.92334 0.90894 0.91422 0.89317 0.92163 0.88001 0.90514 0.92251 0.92229 0.90171 0.77855 0.87874 0.89232 0.77892 0.79809 0.90879 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.40 37.16 0.31 -1.35 16 2 C 0.07 0.98 3.86 -26.16 -0.10 0.88 16 3 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 4 O -0.38 -5.32 11.19 -35.23 -0.39 -5.71 16 5 C 0.05 0.61 7.72 38.21 0.29 0.90 16 6 C -0.17 -2.34 4.88 -24.72 -0.12 -2.46 16 7 C 0.17 2.39 0.94 -130.30 -0.12 2.27 16 8 C -0.17 -2.30 7.07 37.15 0.26 -2.03 16 9 N -0.75 -13.12 5.31 -44.59 -0.24 -13.35 16 10 C 0.20 4.17 6.12 -83.77 -0.51 3.66 16 11 C -0.26 -5.20 6.69 -39.13 -0.26 -5.46 16 12 C -0.15 -3.04 9.87 -39.46 -0.39 -3.42 16 13 C 0.10 2.25 6.79 -83.23 -0.56 1.69 16 14 N -0.89 -17.23 8.97 32.75 0.29 -16.94 16 15 C 0.08 2.03 5.10 -106.66 -0.54 1.48 16 16 C -0.45 -11.99 8.94 -37.91 -0.34 -12.33 16 17 H 0.09 2.34 6.96 -52.49 -0.37 1.98 16 18 C 0.08 2.24 5.39 -17.33 -0.09 2.15 16 19 N -0.82 -22.15 13.93 55.54 0.77 -21.38 16 20 Si 0.92 21.45 24.56 -169.99 -4.17 17.28 16 21 H -0.28 -6.28 6.67 56.52 0.38 -5.90 16 22 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.25 -5.98 6.94 56.52 0.39 -5.59 16 24 C -0.27 -6.48 7.04 -38.75 -0.27 -6.75 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.78 6.87 -51.93 -0.36 0.42 16 27 H 0.07 0.73 6.68 -51.93 -0.35 0.38 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.58 6.01 -51.93 -0.31 1.27 16 31 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 32 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 33 H 0.06 0.82 6.73 -51.93 -0.35 0.47 16 34 H 0.08 1.26 5.25 -51.93 -0.27 0.99 16 35 H 0.39 6.54 8.12 -40.82 -0.33 6.21 16 36 H 0.10 1.82 4.14 -52.49 -0.22 1.60 16 37 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.39 7.75 7.12 -40.82 -0.29 7.45 16 39 H 0.38 6.09 8.84 -40.82 -0.36 5.73 16 40 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 41 H 0.10 2.38 4.81 -52.49 -0.25 2.13 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -28.17 307.90 -7.01 -35.19 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -5.46 Total: 21.06 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.45 Total: -20.79 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.83 Total: -51.67 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.39 Total: -5.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.17 Total: 17.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.17 -7.01 -35.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235675570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.479 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds