Wall clock time and date at job start Mon Mar 30 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.98765 * 2 1 4 4 O 1.43737 * 109.87888 * 121.08394 * 2 1 3 5 5 C 1.44380 * 106.97963 * 145.93569 * 4 2 1 6 6 C 1.54999 * 103.48761 * 319.94313 * 5 4 2 7 7 C 1.54097 * 109.87793 * 238.91537 * 2 1 3 8 8 C 1.52994 * 110.49049 * 357.22188 * 7 2 1 9 9 N 1.46500 * 110.48914 * 119.86966 * 7 2 1 10 10 C 1.39848 * 120.00227 * 177.96107 * 9 7 2 11 11 C 1.39606 * 119.83973 * 352.63683 * 10 9 7 12 12 C 1.38064 * 120.54780 * 179.71452 * 11 10 9 13 13 C 1.38732 * 120.21935 * 0.56082 * 12 11 10 14 14 N 1.38866 * 120.16281 * 179.74478 * 13 12 11 15 15 C 1.41561 * 119.67386 * 359.71847 * 13 12 11 16 16 C 1.41038 * 120.26452 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99777 * 329.59382 * 16 15 13 18 18 C 1.39882 * 119.99735 * 149.60286 * 16 15 13 19 19 N 1.30899 * 120.00060 * 161.40843 * 18 16 15 20 20 Si 1.86800 * 120.00248 * 341.39593 * 18 16 15 21 21 H 1.48500 * 109.46852 * 94.55184 * 20 18 16 22 22 H 1.48493 * 109.47520 * 214.55583 * 20 18 16 23 23 H 1.48504 * 109.47337 * 334.56182 * 20 18 16 24 24 C 1.38009 * 119.84307 * 172.91095 * 10 9 7 25 25 H 1.08997 * 109.47156 * 300.36833 * 1 2 3 26 26 H 1.09003 * 109.46930 * 60.36879 * 1 2 3 27 27 H 1.09002 * 109.47209 * 180.36806 * 1 2 3 28 28 H 1.08993 * 110.62107 * 201.43978 * 5 4 2 29 29 H 1.08998 * 110.61525 * 78.43952 * 5 4 2 30 30 H 1.09001 * 110.90400 * 155.21848 * 6 5 4 31 31 H 1.08998 * 110.90359 * 278.81896 * 6 5 4 32 32 H 1.09000 * 109.47673 * 299.81183 * 8 7 2 33 33 H 1.09006 * 109.47337 * 59.80956 * 8 7 2 34 34 H 1.09002 * 109.47803 * 179.81055 * 8 7 2 35 35 H 0.97001 * 119.99811 * 357.96539 * 9 7 2 36 36 H 1.08002 * 119.72499 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.88573 * 180.27728 * 12 11 10 38 38 H 0.96994 * 120.00313 * 185.24396 * 14 13 12 39 39 H 0.97007 * 119.99751 * 5.24318 * 14 13 12 40 40 H 0.96999 * 120.00432 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.10951 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 1.1576 5 6 3.2379 -1.3642 0.7648 6 6 2.9195 -1.8915 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 6 0.8899 -1.3190 -2.0534 9 7 2.8711 0.1419 -2.0695 10 6 3.4833 -0.3471 -3.2278 11 6 3.4432 -1.7136 -3.5107 12 6 4.0376 -2.2115 -4.6530 13 6 4.6930 -1.3575 -5.5281 14 7 5.2951 -1.8602 -6.6740 15 6 4.7444 0.0291 -5.2474 16 6 5.4078 0.9085 -6.1282 17 1 6.2522 0.5603 -6.7045 18 6 4.9721 2.2316 -6.2552 19 7 5.7678 3.1366 -6.7663 20 14 3.2544 2.7072 -5.6956 21 1 3.3123 3.2231 -4.3043 22 1 2.7156 3.7610 -6.5924 23 1 2.3699 1.5153 -5.7450 24 6 4.1292 0.5226 -4.0828 25 1 -0.3633 0.5195 0.8866 26 1 -0.3633 0.5081 -0.8933 27 1 -0.3634 -1.0277 0.0066 28 1 3.4584 -2.1907 1.4401 29 1 4.0685 -0.6589 0.7356 30 1 3.8332 -2.0224 -1.2374 31 1 2.3540 -2.8220 -0.6098 32 1 0.3233 -2.0162 -1.4360 33 1 0.2384 -0.5065 -2.3751 34 1 1.2784 -1.8411 -2.9278 35 1 2.9875 1.0706 -1.8145 36 1 2.9386 -2.3862 -2.8329 37 1 3.9962 -3.2699 -4.8637 38 1 5.8170 -1.2746 -7.2445 39 1 5.1937 -2.7972 -6.9040 40 1 5.4656 4.0540 -6.8548 41 1 4.1624 1.5785 -3.8582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235675570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:04 Heat of formation + Delta-G solvation = -33.489904 kcal Electronic energy + Delta-G solvation = -22217.959034 eV Core-core repulsion = 19096.607123 eV Total energy + Delta-G solvation = -3121.351911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40626 -39.66360 -37.00198 -35.29591 -34.43716 -32.72924 -32.16987 -31.72357 -28.51873 -28.08813 -26.64807 -25.47214 -23.66962 -22.82031 -21.55720 -20.47997 -19.13709 -18.26123 -17.59680 -17.27551 -16.89040 -16.64218 -16.29776 -16.09168 -15.25212 -15.00047 -14.88310 -14.53431 -14.33266 -13.95709 -13.85411 -13.54573 -13.43429 -13.21817 -13.05999 -12.64751 -12.54198 -12.27161 -12.22613 -12.16621 -12.01864 -11.69710 -11.63830 -11.30758 -11.23068 -10.87030 -10.67691 -9.49954 -9.33434 -8.77708 -7.51222 -6.13722 0.93319 1.20744 1.28698 1.52783 1.54187 2.19181 2.62322 2.78172 2.95129 3.51669 3.69111 3.72928 3.80847 3.91738 4.13044 4.28197 4.36099 4.43623 4.59880 4.66497 4.72676 4.82545 4.86073 4.88941 4.95168 4.98068 5.06403 5.12187 5.20445 5.21456 5.38451 5.45867 5.50254 5.67844 5.81245 5.89061 6.00808 6.21767 6.35682 6.68888 6.88434 6.97520 7.08661 7.31681 7.59021 8.31320 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.006082 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.797072 B = 4602.459898 C = 5344.949234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.063 0.937 4 O -0.385 6.385 5 C 0.048 3.952 6 C -0.168 4.168 7 C 0.158 3.842 8 C -0.162 4.162 9 N -0.749 5.749 10 C 0.196 3.804 11 C -0.239 4.239 12 C -0.147 4.147 13 C 0.085 3.915 14 N -0.878 5.878 15 C 0.049 3.951 16 C -0.475 4.475 17 H 0.060 0.940 18 C 0.047 3.953 19 N -0.865 5.865 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.260 1.260 24 C -0.281 4.281 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.388 0.612 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.389 0.611 39 H 0.394 0.606 40 H 0.286 0.714 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -8.593 11.536 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.081 0.919 4 O -0.305 6.305 5 C -0.029 4.029 6 C -0.207 4.207 7 C 0.070 3.930 8 C -0.220 4.220 9 N -0.383 5.383 10 C 0.095 3.905 11 C -0.263 4.263 12 C -0.171 4.171 13 C -0.018 4.018 14 N -0.422 5.422 15 C 0.044 3.956 16 C -0.506 4.506 17 H 0.078 0.922 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.795 3.205 21 H -0.195 1.195 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.305 4.305 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.217 0.783 39 H 0.222 0.778 40 H 0.096 0.904 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.936 -8.475 11.762 17.575 hybrid contribution 0.350 1.097 -0.701 1.348 sum -9.586 -7.378 11.061 16.391 Atomic orbital electron populations 1.22003 0.91655 1.03777 1.02821 1.22924 0.96607 0.95136 0.83819 0.91894 1.88850 1.40388 1.67972 1.33256 1.23616 0.86864 0.96646 0.95734 1.23748 1.01641 0.98919 0.96369 1.21448 0.90847 0.90283 0.90391 1.22444 0.97128 1.01642 1.00804 1.44656 1.56511 1.11814 1.25336 1.17310 0.93786 0.92659 0.86705 1.20370 1.11948 0.92660 1.01304 1.20252 1.03435 0.97851 0.95555 1.17992 1.00954 0.92241 0.90570 1.41797 1.61198 1.12199 1.26966 1.17290 0.94162 0.91489 0.92677 1.19073 1.14125 0.94477 1.22913 0.92195 1.26606 1.01638 0.95558 0.92665 1.69780 1.37489 1.03590 1.38501 0.85420 0.79718 0.77796 0.77557 1.19479 1.21836 1.18367 1.20320 1.14519 0.97384 0.98287 0.91544 0.90419 0.90555 0.86981 0.93009 0.89770 0.88552 0.89627 0.92179 0.91901 0.77753 0.84929 0.86094 0.78292 0.77802 0.90423 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.40 71.98 0.60 -2.14 16 2 C 0.07 1.73 3.86 30.97 0.12 1.85 16 3 H 0.06 1.55 7.48 -2.39 -0.02 1.53 16 4 O -0.39 -9.63 11.19 -148.98 -1.67 -11.30 16 5 C 0.05 1.07 7.72 72.67 0.56 1.63 16 6 C -0.17 -4.01 4.88 31.90 0.16 -3.86 16 7 C 0.16 4.08 0.94 4.59 0.00 4.09 16 8 C -0.16 -3.89 7.07 71.98 0.51 -3.38 16 9 N -0.75 -24.64 5.31 -294.98 -1.57 -26.21 16 10 C 0.20 7.86 6.12 38.14 0.23 8.09 16 11 C -0.24 -8.85 6.69 22.56 0.15 -8.70 16 12 C -0.15 -5.66 9.87 22.35 0.22 -5.44 16 13 C 0.09 3.79 6.79 38.97 0.26 4.05 16 14 N -0.88 -33.77 8.97 -50.31 -0.45 -34.22 16 15 C 0.05 2.50 5.10 -21.18 -0.11 2.39 16 16 C -0.47 -26.37 8.94 23.36 0.21 -26.16 16 17 H 0.06 3.50 6.96 -2.91 -0.02 3.48 16 18 C 0.05 2.58 5.39 85.23 0.46 3.04 16 19 N -0.86 -48.76 13.93 21.82 0.30 -48.46 16 20 Si 0.97 45.36 24.56 68.60 1.68 47.05 16 21 H -0.27 -12.04 6.67 99.48 0.66 -11.38 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.26 -12.53 6.94 99.48 0.69 -11.84 16 24 C -0.28 -13.35 7.04 22.81 0.16 -13.19 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.40 6.87 -2.39 -0.02 1.38 16 27 H 0.08 1.31 6.68 -2.39 -0.02 1.29 16 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.34 6.01 -2.39 -0.01 2.33 16 31 H 0.10 1.94 7.84 -2.39 -0.02 1.92 16 32 H 0.09 1.61 6.79 -2.39 -0.02 1.60 16 33 H 0.06 1.44 6.73 -2.38 -0.02 1.43 16 34 H 0.06 1.73 5.25 -2.39 -0.01 1.72 16 35 H 0.39 12.59 8.12 -92.71 -0.75 11.83 16 36 H 0.13 4.12 4.14 -2.91 -0.01 4.11 16 37 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.39 15.72 7.12 -92.71 -0.66 15.06 16 39 H 0.39 12.11 8.84 -92.70 -0.82 11.29 16 40 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 41 H 0.09 4.24 4.81 -2.91 -0.01 4.23 16 Total: -1.00 -61.65 307.90 0.65 -61.00 By element: Atomic # 1 Polarization: 51.06 SS G_CDS: -1.20 Total: 49.86 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 3.54 Total: -37.72 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -1.71 Total: -108.89 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.67 Total: -11.30 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.68 Total: 47.05 kcal Total: -61.65 0.65 -61.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235675570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.509 kcal (2) G-P(sol) polarization free energy of solvation -61.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds