Wall clock time and date at job start Mon Mar 30 2020 08:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38256 * 120.00303 * 2 1 4 4 C 1.38214 * 120.00333 * 179.78730 * 3 2 1 5 5 C 1.38261 * 119.99915 * 0.43752 * 4 3 2 6 6 C 1.38221 * 119.99818 * 359.81457 * 5 4 3 7 7 C 1.38221 * 119.99930 * 180.26815 * 2 1 3 8 8 C 1.50693 * 119.99706 * 359.97438 * 7 2 1 9 9 H 1.08999 * 109.47518 * 41.58964 * 8 7 2 10 10 C 1.52995 * 109.47384 * 281.58491 * 8 7 2 11 11 H 1.08999 * 109.47155 * 297.24555 * 10 8 7 12 12 C 1.52997 * 109.47444 * 57.24718 * 10 8 7 13 13 N 1.46907 * 109.47288 * 177.24944 * 10 8 7 14 14 N 1.46905 * 109.46964 * 161.58689 * 8 7 2 15 15 C 1.46908 * 110.99865 * 220.72208 * 14 8 7 16 16 C 1.46890 * 111.00286 * 96.76436 * 14 8 7 17 17 H 1.09003 * 109.46996 * 39.00214 * 16 14 8 18 18 C 1.53000 * 109.47454 * 278.99765 * 16 14 8 19 19 C 1.50704 * 109.47301 * 158.99584 * 16 14 8 20 20 H 1.08000 * 119.99829 * 0.02562 * 19 16 14 21 21 C 1.37876 * 120.00349 * 180.02562 * 19 16 14 22 22 N 1.31519 * 119.99477 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 120.00348 * 180.02562 * 21 19 16 24 24 H 1.48504 * 109.46960 * 59.99847 * 23 21 19 25 25 H 1.48498 * 109.47485 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47264 * 300.00095 * 23 21 19 27 27 H 1.09002 * 109.47404 * 269.69280 * 1 2 3 28 28 H 1.09002 * 109.47111 * 149.68805 * 1 2 3 29 29 H 1.08998 * 109.46978 * 29.68833 * 1 2 3 30 30 H 1.08000 * 120.00097 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.00219 * 180.26857 * 4 3 2 32 32 H 1.07995 * 120.00148 * 179.83088 * 5 4 3 33 33 H 1.07996 * 120.00121 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46830 * 65.85882 * 12 10 8 35 35 H 1.08999 * 109.47709 * 185.85702 * 12 10 8 36 36 H 1.08995 * 109.47105 * 305.86579 * 12 10 8 37 37 H 1.00898 * 110.99836 * 63.60092 * 13 10 8 38 38 H 1.00903 * 110.99693 * 187.55243 * 13 10 8 39 39 H 1.09002 * 109.47259 * 59.99888 * 15 14 8 40 40 H 1.09001 * 109.47081 * 179.97438 * 15 14 8 41 41 H 1.08996 * 109.46678 * 299.99582 * 15 14 8 42 42 H 1.08992 * 109.47311 * 301.46592 * 18 16 14 43 43 H 1.09001 * 109.46718 * 61.46582 * 18 16 14 44 44 H 1.09000 * 109.47113 * 181.46190 * 18 16 14 45 45 H 0.97001 * 119.99454 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0044 5 6 4.2717 -0.0001 -0.0003 6 6 3.5806 -1.1971 -0.0055 7 6 2.1980 -1.1970 -0.0056 8 6 1.4445 -2.5020 -0.0111 9 1 0.5969 -2.4293 -0.6926 10 6 0.9391 -2.8051 1.4008 11 1 1.7888 -2.9263 2.0726 12 6 0.0642 -1.6487 1.8886 13 7 0.1488 -4.0434 1.3827 14 7 2.3375 -3.5812 -0.4538 15 6 1.6377 -4.5076 -1.3539 16 6 2.9101 -4.2952 0.6951 17 1 2.1517 -4.4032 1.4705 18 6 4.0963 -3.5029 1.2485 19 6 3.3778 -5.6591 0.2567 20 1 3.2616 -5.9647 -0.7727 21 6 3.9540 -6.5168 1.1695 22 7 4.0950 -6.1448 2.4231 23 14 4.5343 -8.2070 0.6260 24 1 5.5682 -8.0595 -0.4299 25 1 5.1132 -8.9290 1.7874 26 1 3.3836 -8.9762 0.0879 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1326 0.0088 32 1 5.3517 -0.0001 0.0005 33 1 4.1205 -2.1323 -0.0096 34 1 -0.8380 -1.5937 1.2794 35 1 -0.2105 -1.8151 2.9302 36 1 0.6175 -0.7135 1.8036 37 1 0.7196 -4.8329 1.1203 38 1 -0.2977 -4.2003 2.2739 39 1 1.2841 -3.9649 -2.2306 40 1 2.3218 -5.2964 -1.6669 41 1 0.7883 -4.9487 -0.8325 42 1 4.8432 -3.3726 0.4655 43 1 3.7532 -2.5261 1.5896 44 1 4.5373 -4.0455 2.0847 45 1 4.5000 -6.7484 3.0654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251139560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:02 Heat of formation + Delta-G solvation = 88.777528 kcal Electronic energy + Delta-G solvation = -23532.164502 eV Core-core repulsion = 20551.947599 eV Total energy + Delta-G solvation = -2980.216903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61104 -39.01554 -36.25265 -34.47998 -33.76231 -32.41286 -31.25948 -29.60689 -28.67146 -27.29727 -26.35120 -24.71300 -23.05523 -22.80089 -21.43756 -19.82109 -18.63275 -17.70454 -17.09035 -16.84119 -16.39110 -15.95525 -15.82139 -15.36690 -15.03209 -14.86241 -14.39242 -14.02620 -13.92408 -13.82969 -13.49522 -13.27588 -13.22871 -12.95860 -12.84187 -12.68543 -12.52962 -12.37202 -12.21088 -11.98627 -11.77956 -11.66033 -11.46498 -11.22239 -11.10025 -10.56874 -10.42085 -9.62535 -9.37641 -9.25936 -8.69947 -8.09055 -6.19546 0.60788 0.71432 1.42333 1.43791 1.50007 2.42818 3.00479 3.19880 3.42733 3.62280 4.09155 4.11870 4.15426 4.21239 4.38282 4.42365 4.50961 4.64690 4.67748 4.72111 4.84223 4.85955 4.89891 4.97677 5.01050 5.06798 5.10193 5.15993 5.20644 5.21605 5.28139 5.37111 5.42437 5.49082 5.58881 5.73581 5.78666 5.83615 5.90804 6.05331 6.22550 6.25350 6.37029 6.46789 6.54453 6.86031 6.99549 7.49969 8.95054 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.006310 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.851482 B = 4436.084883 C = 4969.271676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.133 4.133 7 C -0.083 4.083 8 C 0.135 3.865 9 H 0.080 0.920 10 C 0.071 3.929 11 H 0.019 0.981 12 C -0.159 4.159 13 N -0.847 5.847 14 N -0.542 5.542 15 C 0.036 3.964 16 C 0.197 3.803 17 H 0.020 0.980 18 C -0.123 4.123 19 C -0.533 4.533 20 H 0.070 0.930 21 C 0.018 3.982 22 N -0.915 5.915 23 Si 0.950 3.050 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.271 1.271 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.344 0.656 38 H 0.338 0.662 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 12.427 -2.710 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.143 4.143 5 C -0.169 4.169 6 C -0.151 4.151 7 C -0.084 4.084 8 C 0.026 3.974 9 H 0.098 0.902 10 C -0.041 4.041 11 H 0.037 0.963 12 C -0.216 4.216 13 N -0.381 5.381 14 N -0.265 5.265 15 C -0.112 4.112 16 C 0.090 3.910 17 H 0.037 0.963 18 C -0.181 4.181 19 C -0.571 4.571 20 H 0.088 0.912 21 C -0.181 4.181 22 N -0.555 5.555 23 Si 0.777 3.223 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.196 1.196 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.604 12.891 -3.388 14.875 hybrid contribution 0.910 -2.049 1.153 2.521 sum -5.695 10.842 -2.235 12.449 Atomic orbital electron populations 1.21817 0.90146 1.02728 1.04574 1.19952 0.97042 0.92179 0.99871 1.21218 0.94288 0.97709 1.01946 1.21363 0.94762 0.98040 1.00102 1.21356 1.00226 0.92905 1.02462 1.22337 0.95379 1.00275 0.97062 1.19788 0.93864 0.94006 1.00720 1.20556 0.92738 0.89590 0.94549 0.90181 1.21709 0.94548 0.91240 0.96582 0.96318 1.22829 1.00317 0.97732 1.00740 1.59209 1.36884 1.05665 1.36316 1.62102 1.33013 1.12420 1.18948 1.22385 0.97010 0.96382 0.95441 1.19509 0.92652 0.90662 0.88141 0.96327 1.22087 0.99107 0.97411 0.99465 1.21884 1.39588 0.99578 0.96024 0.91245 1.25596 0.96028 1.01468 0.94997 1.70015 1.45338 1.37028 1.03147 0.85732 0.78651 0.80528 0.77407 1.20251 1.21527 1.19630 0.87569 0.91959 0.90809 0.83792 0.84170 0.86018 0.83927 0.89845 0.93256 0.89527 0.83804 0.84982 0.92647 0.91459 0.95598 0.95140 0.94689 0.93026 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.66 71.23 0.55 -2.45 16 2 C -0.09 -2.51 4.58 -19.87 -0.09 -2.60 16 3 C -0.13 -3.31 9.70 22.27 0.22 -3.09 16 4 C -0.12 -3.22 10.05 22.27 0.22 -3.00 16 5 C -0.15 -4.72 10.05 22.27 0.22 -4.50 16 6 C -0.13 -4.91 7.11 22.27 0.16 -4.75 16 7 C -0.08 -2.84 4.67 -19.87 -0.09 -2.93 16 8 C 0.13 4.87 1.63 44.16 0.07 4.95 16 9 H 0.08 2.82 5.96 -2.39 -0.01 2.81 16 10 C 0.07 2.53 2.27 44.91 0.10 2.63 16 11 H 0.02 0.81 5.20 -2.39 -0.01 0.80 16 12 C -0.16 -4.35 6.97 71.98 0.50 -3.85 16 13 N -0.85 -30.01 8.49 -168.68 -1.43 -31.44 16 14 N -0.54 -22.58 3.69 -880.60 -3.25 -25.82 16 15 C 0.04 1.41 8.50 127.69 1.09 2.50 16 16 C 0.20 9.38 1.09 44.17 0.05 9.43 16 17 H 0.02 0.97 3.36 -2.39 -0.01 0.96 16 18 C -0.12 -5.96 6.94 71.98 0.50 -5.46 16 19 C -0.53 -27.74 7.92 25.60 0.20 -27.54 16 20 H 0.07 3.58 5.08 -2.91 -0.01 3.57 16 21 C 0.02 0.97 5.30 84.65 0.45 1.42 16 22 N -0.92 -50.91 11.31 21.45 0.24 -50.67 16 23 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 H 0.11 2.09 4.47 -2.39 -0.01 2.08 16 28 H 0.06 1.48 5.63 -2.39 -0.01 1.47 16 29 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.14 6.02 2.96 -2.91 -0.01 6.02 16 34 H 0.08 2.02 6.21 -2.39 -0.01 2.01 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 2.30 4.06 -2.39 -0.01 2.29 16 37 H 0.34 14.31 5.00 -89.70 -0.45 13.86 16 38 H 0.34 10.86 8.95 -89.69 -0.80 10.06 16 39 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 40 H 0.07 2.83 5.29 -2.39 -0.01 2.82 16 41 H 0.03 1.01 6.35 -2.39 -0.02 1.00 16 42 H 0.03 1.48 6.73 -2.39 -0.02 1.46 16 43 H 0.03 1.58 4.66 -2.39 -0.01 1.57 16 44 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 45 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -57.19 311.51 1.53 -55.66 By element: Atomic # 1 Polarization: 46.93 SS G_CDS: -0.20 Total: 46.73 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 4.14 Total: -39.25 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.44 Total: -107.94 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -57.19 1.53 -55.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251139560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.435 kcal (2) G-P(sol) polarization free energy of solvation -57.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds