Wall clock time and date at job start Mon Mar 30 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.52561 * 2 1 4 4 C 1.53093 * 109.57156 * 120.15374 * 2 1 3 5 5 O 1.42908 * 109.41738 * 177.54341 * 4 2 1 6 6 C 1.42896 * 114.09632 * 298.84378 * 5 4 2 7 7 C 1.53106 * 109.48862 * 61.10588 * 6 5 4 8 8 C 1.53170 * 109.15912 * 302.52664 * 7 6 5 9 9 H 1.09004 * 109.54457 * 296.93618 * 8 7 6 10 10 N 1.46502 * 109.54585 * 176.75834 * 8 7 6 11 11 C 1.39852 * 120.00013 * 85.17498 * 10 8 7 12 12 C 1.39594 * 119.83815 * 0.02562 * 11 10 8 13 13 C 1.38065 * 120.55058 * 179.97438 * 12 11 10 14 14 C 1.38733 * 120.21609 * 359.97438 * 13 12 11 15 15 N 1.38872 * 120.16288 * 179.97438 * 14 13 12 16 16 C 1.41566 * 119.67601 * 0.02562 * 14 13 12 17 17 C 1.41030 * 120.26492 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00660 * 333.62467 * 17 16 14 19 19 C 1.39895 * 119.99382 * 153.62342 * 17 16 14 20 20 N 1.30897 * 120.00170 * 343.99583 * 19 17 16 21 21 Si 1.86803 * 119.99687 * 163.99898 * 19 17 16 22 22 H 1.48497 * 109.47155 * 59.99777 * 21 19 17 23 23 H 1.48499 * 109.47141 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46905 * 299.99731 * 21 19 17 25 25 C 1.38004 * 119.83615 * 179.97438 * 11 10 8 26 26 H 1.08992 * 109.47211 * 180.13177 * 1 2 3 27 27 H 1.09000 * 109.47068 * 300.13694 * 1 2 3 28 28 H 1.09001 * 109.46655 * 60.12870 * 1 2 3 29 29 H 1.09004 * 109.48102 * 297.52827 * 4 2 1 30 30 H 1.09003 * 109.48513 * 57.55068 * 4 2 1 31 31 H 1.09001 * 109.48069 * 181.13924 * 6 5 4 32 32 H 1.09003 * 109.48108 * 301.16204 * 6 5 4 33 33 H 1.08998 * 109.59646 * 182.57725 * 7 6 5 34 34 H 1.08999 * 109.44672 * 62.38967 * 7 6 5 35 35 H 0.97000 * 119.99679 * 265.18120 * 10 8 7 36 36 H 1.07999 * 119.73289 * 359.97438 * 12 11 10 37 37 H 1.07992 * 119.88995 * 179.70303 * 13 12 11 38 38 H 0.96992 * 120.00033 * 359.97438 * 15 14 13 39 39 H 0.96997 * 119.99917 * 180.02562 * 15 14 13 40 40 H 0.96994 * 119.99878 * 180.02562 * 20 19 17 41 41 H 1.07993 * 120.11962 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0428 -0.7246 1.2473 5 8 3.4708 -0.7728 1.2153 6 6 4.0057 -1.4795 0.0944 7 6 3.5716 -0.7872 -1.2004 8 6 2.0419 -0.7248 -1.2486 9 1 1.6363 -1.7362 -1.2751 10 7 1.6187 0.0045 -2.4466 11 6 1.4915 -0.6680 -3.6662 12 6 1.7682 -2.0343 -3.7380 13 6 1.6470 -2.7130 -4.9343 14 6 1.2471 -2.0415 -6.0805 15 7 1.1261 -2.7250 -7.2833 16 6 0.9641 -0.6558 -6.0183 17 6 0.5562 0.0390 -7.1758 18 1 0.8493 -0.3186 -8.1518 19 6 -0.2283 1.1915 -7.0597 20 7 -0.8428 1.4542 -5.9342 21 14 -0.3988 2.3553 -8.5108 22 1 -0.9960 1.6291 -9.6602 23 1 -1.2773 3.4916 -8.1335 24 1 0.9408 2.8702 -8.8925 25 6 1.0921 0.0222 -4.7925 26 1 -0.3633 -1.0276 0.0024 27 1 -0.3633 0.5160 0.8887 28 1 -0.3633 0.5118 -0.8912 29 1 1.7171 -0.1886 2.1388 30 1 1.6451 -1.7393 1.2676 31 1 5.0939 -1.4874 0.1553 32 1 3.6339 -2.5042 0.0996 33 1 3.9403 -1.3506 -2.0575 34 1 3.9785 0.2236 -1.2254 35 1 1.4267 0.9539 -2.3939 36 1 2.0797 -2.5651 -2.8506 37 1 1.8684 -3.7690 -4.9787 38 1 1.3217 -3.6742 -7.3235 39 1 0.8467 -2.2531 -8.0833 40 1 -1.3870 2.2531 -5.8538 41 1 0.8777 1.0790 -4.7329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302433414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:27 Heat of formation + Delta-G solvation = -50.901950 kcal Electronic energy + Delta-G solvation = -21704.386155 eV Core-core repulsion = 18582.279201 eV Total energy + Delta-G solvation = -3122.106954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77330 -39.48144 -37.13429 -35.34109 -34.83457 -33.19097 -31.84279 -31.26091 -28.28224 -27.51319 -26.66709 -24.86540 -23.27857 -23.00815 -21.45282 -20.98557 -18.93577 -17.92444 -17.31421 -17.12395 -16.94149 -16.65895 -16.35571 -15.84171 -15.57450 -15.16320 -14.77751 -14.29994 -14.10090 -13.91719 -13.72297 -13.57636 -13.19159 -12.98812 -12.90297 -12.85646 -12.70523 -12.36189 -12.18982 -12.04507 -11.84790 -11.78549 -11.23097 -11.18003 -11.12186 -10.92335 -10.51030 -9.38163 -9.13286 -8.49716 -7.28496 -5.99901 1.13635 1.40503 1.49434 1.53037 1.66732 2.26903 2.83521 2.93111 3.03041 3.68964 3.78009 3.86752 3.91643 4.02693 4.16262 4.28723 4.46169 4.50792 4.60793 4.66030 4.69648 4.79599 4.85822 4.91365 4.97539 5.10762 5.17530 5.24257 5.28441 5.36246 5.39090 5.46058 5.68165 5.90454 6.07287 6.17779 6.25197 6.29904 6.57766 6.97935 7.07351 7.14778 7.26270 7.48291 7.67586 8.51100 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.004813 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.800373 B = 5816.304355 C = 6602.346910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 H 0.075 0.925 4 C 0.071 3.929 5 O -0.397 6.397 6 C 0.067 3.933 7 C -0.166 4.166 8 C 0.166 3.834 9 H 0.064 0.936 10 N -0.749 5.749 11 C 0.179 3.821 12 C -0.256 4.256 13 C -0.158 4.158 14 C 0.068 3.932 15 N -0.880 5.880 16 C 0.061 3.939 17 C -0.494 4.494 18 H 0.073 0.927 19 C 0.035 3.965 20 N -0.833 5.833 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.266 1.266 25 C -0.225 4.225 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.386 0.614 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.390 0.610 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -3.202 10.370 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 H 0.093 0.907 4 C -0.006 4.006 5 O -0.316 6.316 6 C -0.011 4.011 7 C -0.205 4.205 8 C 0.060 3.940 9 H 0.082 0.918 10 N -0.381 5.381 11 C 0.079 3.921 12 C -0.280 4.280 13 C -0.182 4.182 14 C -0.034 4.034 15 N -0.423 5.423 16 C 0.056 3.944 17 C -0.525 4.525 18 H 0.091 0.909 19 C -0.178 4.178 20 N -0.461 5.461 21 Si 0.795 3.205 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.191 1.191 25 C -0.250 4.250 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.218 0.782 39 H 0.217 0.783 40 H 0.089 0.911 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.130 -3.061 10.792 11.954 hybrid contribution -0.569 0.745 -1.439 1.717 sum 3.561 -2.316 9.353 10.272 Atomic orbital electron populations 1.21651 0.93756 1.02105 1.02008 1.21998 0.97019 1.00581 0.94927 0.90694 1.22731 0.80227 1.00317 0.97360 1.87887 1.21143 1.76786 1.45750 1.22629 0.99853 0.94604 0.83966 1.22678 0.97194 1.01739 0.98925 1.20790 0.92977 0.95768 0.84456 0.91784 1.44425 1.78124 1.10076 1.05496 1.17561 0.97136 0.91684 0.85705 1.19904 1.17965 0.92736 0.97364 1.20054 1.07771 0.98242 0.92136 1.18045 1.06237 0.91460 0.87663 1.41683 1.81624 1.10720 1.08322 1.17353 0.93280 0.89852 0.93914 1.19361 1.29965 1.09426 0.93790 0.90901 1.26535 0.93063 0.98892 0.99310 1.69953 1.23191 1.24888 1.28062 0.85404 0.78728 0.77684 0.78701 1.18501 1.19992 1.19103 1.20439 1.13183 0.98767 0.92625 0.92726 0.90580 0.93954 0.86792 0.92114 0.87431 0.92184 0.91578 0.92146 0.78068 0.87540 0.87232 0.78238 0.78274 0.91120 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.08 71.98 0.65 -2.67 16 2 C -0.13 -3.07 2.48 -10.70 -0.03 -3.10 16 3 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.07 1.44 6.13 72.01 0.44 1.88 16 5 O -0.40 -9.44 10.77 -148.98 -1.60 -11.04 16 6 C 0.07 1.48 6.84 72.02 0.49 1.97 16 7 C -0.17 -4.59 5.67 30.69 0.17 -4.41 16 8 C 0.17 4.97 1.63 45.11 0.07 5.05 16 9 H 0.06 2.03 6.47 -2.39 -0.02 2.02 16 10 N -0.75 -28.26 4.65 -318.42 -1.48 -29.74 16 11 C 0.18 8.29 6.63 38.13 0.25 8.54 16 12 C -0.26 -11.21 8.89 22.56 0.20 -11.01 16 13 C -0.16 -7.02 9.86 22.35 0.22 -6.80 16 14 C 0.07 3.29 6.79 38.97 0.26 3.55 16 15 N -0.88 -35.59 8.98 -50.30 -0.45 -36.04 16 16 C 0.06 3.32 5.57 -21.18 -0.12 3.20 16 17 C -0.49 -26.60 8.48 23.36 0.20 -26.40 16 18 H 0.07 3.72 6.71 -2.91 -0.02 3.70 16 19 C 0.03 1.79 5.16 85.23 0.44 2.23 16 20 N -0.83 -44.87 10.97 21.82 0.24 -44.64 16 21 Si 0.97 39.46 29.59 68.60 2.03 41.49 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 25 C -0.23 -12.01 8.49 22.81 0.19 -11.82 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.24 7.68 -2.39 -0.02 1.22 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 2.01 7.70 -2.39 -0.02 1.99 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.39 14.54 8.57 -92.71 -0.79 13.74 16 36 H 0.11 4.12 6.04 -2.91 -0.02 4.11 16 37 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.39 12.99 8.83 -92.71 -0.82 12.17 16 39 H 0.39 15.65 7.05 -92.71 -0.65 14.99 16 40 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 41 H 0.09 5.36 6.22 -2.91 -0.02 5.34 16 Total: -1.00 -61.20 324.74 0.99 -60.21 By element: Atomic # 1 Polarization: 60.75 SS G_CDS: -1.20 Total: 59.55 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 3.46 Total: -39.79 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -1.69 Total: -110.42 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.60 Total: -11.04 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -61.20 0.99 -60.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302433414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.306 kcal (2) G-P(sol) polarization free energy of solvation -61.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds