Wall clock time and date at job start Mon Mar 30 2020 07:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46922 * 2 1 4 4 C 1.52996 * 109.47060 * 120.00457 * 2 1 3 5 5 C 1.53003 * 109.47045 * 174.41159 * 4 2 1 6 6 H 1.09007 * 109.47269 * 53.72993 * 5 4 2 7 7 C 1.52999 * 109.47084 * 173.72728 * 5 4 2 8 8 C 1.50693 * 109.47058 * 293.72873 * 5 4 2 9 9 O 1.21271 * 120.00115 * 0.02562 * 8 5 4 10 10 N 1.34782 * 119.99809 * 179.97438 * 8 5 4 11 11 C 1.39474 * 119.99857 * 184.49177 * 10 8 5 12 12 C 1.38593 * 119.58024 * 185.56469 * 11 10 8 13 13 C 1.40810 * 118.79866 * 179.97438 * 12 11 10 14 14 C 1.41538 * 120.99779 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00071 * 146.44730 * 14 13 12 16 16 C 1.40027 * 120.00110 * 326.43921 * 14 13 12 17 17 N 1.30746 * 119.99719 * 3.45912 * 16 14 13 18 18 Si 1.86795 * 120.00243 * 183.45701 * 16 14 13 19 19 H 1.48502 * 109.47231 * 60.00667 * 18 16 14 20 20 H 1.48500 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47457 * 300.00211 * 18 16 14 22 22 C 1.41176 * 118.00363 * 0.02562 * 13 12 11 23 23 C 1.37593 * 119.01826 * 0.02562 * 22 13 12 24 24 N 1.32085 * 121.10400 * 359.96970 * 23 22 13 25 25 H 1.09004 * 109.46746 * 299.99650 * 1 2 3 26 26 H 1.08993 * 109.47241 * 59.99848 * 1 2 3 27 27 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46729 * 239.99795 * 2 1 3 29 29 H 1.09009 * 109.46815 * 185.42367 * 3 2 1 30 30 H 1.08995 * 109.47031 * 305.42129 * 3 2 1 31 31 H 1.08998 * 109.47205 * 65.42643 * 3 2 1 32 32 H 1.08998 * 109.47816 * 54.41169 * 4 2 1 33 33 H 1.09007 * 109.47112 * 294.40652 * 4 2 1 34 34 H 1.08996 * 109.47194 * 55.12212 * 7 5 4 35 35 H 1.09008 * 109.47021 * 175.11582 * 7 5 4 36 36 H 1.09004 * 109.47602 * 295.11516 * 7 5 4 37 37 H 0.96994 * 119.99996 * 4.49376 * 10 8 5 38 38 H 1.08001 * 120.59832 * 0.02562 * 12 11 10 39 39 H 0.97001 * 120.00152 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.49441 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.44512 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5635 -0.8441 1.1809 6 1 4.0006 0.1411 1.0177 7 6 4.0880 -1.4230 2.4965 8 6 3.9434 -1.7569 0.0436 9 8 3.0807 -2.2592 -0.6449 10 7 5.2422 -2.0140 -0.2091 11 6 5.5981 -2.7823 -1.3174 12 6 6.9241 -3.1388 -1.5053 13 6 7.2650 -3.9152 -2.6295 14 6 8.6046 -4.3060 -2.8665 15 1 8.8153 -5.2584 -3.3300 16 6 9.6566 -3.4577 -2.5000 17 7 9.4052 -2.3355 -1.8781 18 14 11.4193 -3.9294 -2.8996 19 1 11.5716 -4.0752 -4.3696 20 1 12.3383 -2.8711 -2.4090 21 1 11.7495 -5.2169 -2.2376 22 6 6.2305 -4.2922 -3.5132 23 6 4.9427 -3.8894 -3.2437 24 7 4.6646 -3.1611 -2.1774 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1257 1.4440 -0.0971 30 1 1.5995 1.9835 -0.8374 31 1 1.7581 1.9275 0.9346 32 1 1.5973 -1.7160 1.3006 33 1 1.7607 -0.1530 2.1364 34 1 3.5863 -2.3683 2.7030 35 1 5.1620 -1.5915 2.4167 36 1 3.8895 -0.7216 3.3069 37 1 5.9292 -1.6648 0.3798 38 1 7.6821 -2.8275 -0.8018 39 1 10.1339 -1.7480 -1.6238 40 1 6.4467 -4.8879 -4.3877 41 1 4.1461 -4.1735 -3.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545199338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:31 Heat of formation + Delta-G solvation = -26.793045 kcal Electronic energy + Delta-G solvation = -21399.013968 eV Core-core repulsion = 18277.952455 eV Total energy + Delta-G solvation = -3121.061513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89555 -38.14718 -36.18654 -34.24192 -33.77297 -32.74112 -30.49702 -28.55064 -27.10675 -26.50261 -25.96950 -23.68454 -21.91949 -21.06379 -20.01160 -19.18419 -17.64538 -16.93091 -15.85763 -15.24832 -15.01346 -14.77713 -14.21733 -14.15901 -13.89193 -13.70305 -13.29422 -12.94870 -12.65245 -12.57841 -12.47487 -12.18449 -12.08400 -11.74263 -11.60237 -11.41371 -11.31326 -11.20466 -10.89964 -10.53262 -10.35065 -10.34799 -10.28346 -10.15918 -9.60841 -9.37252 -9.15434 -7.90479 -7.72881 -7.01689 -6.67665 -4.63706 2.56151 2.82898 3.02339 3.04886 3.20451 3.50547 3.70364 3.88627 4.71067 4.75192 4.93472 4.95456 5.15917 5.30668 5.40055 5.46581 5.64182 5.64524 5.68935 5.82390 5.88947 5.90091 5.94699 6.00401 6.03113 6.11052 6.22627 6.34307 6.49239 6.58070 6.66351 6.71118 6.79167 6.97790 7.16412 7.38289 7.49272 7.81560 7.99471 8.23934 8.44589 8.71807 8.78431 8.94260 9.66705 10.16341 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.004126 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.616242 B = 6784.582533 C = 7280.403197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.147 4.147 4 C -0.090 4.090 5 C -0.116 4.116 6 H 0.095 0.905 7 C -0.144 4.144 8 C 0.502 3.498 9 O -0.479 6.479 10 N -0.660 5.660 11 C 0.333 3.667 12 C -0.232 4.232 13 C 0.141 3.859 14 C -0.461 4.461 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.806 5.806 18 Si 0.918 3.082 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.276 4.276 23 C 0.113 3.887 24 N -0.547 5.547 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.407 0.593 38 H 0.136 0.864 39 H 0.280 0.720 40 H 0.103 0.897 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 5.794 7.742 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.205 4.205 4 C -0.128 4.128 5 C -0.137 4.137 6 H 0.113 0.887 7 C -0.202 4.202 8 C 0.287 3.713 9 O -0.349 6.349 10 N -0.306 5.306 11 C 0.108 3.892 12 C -0.257 4.257 13 C 0.133 3.867 14 C -0.493 4.493 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.434 5.434 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.300 4.300 23 C -0.042 4.042 24 N -0.266 5.266 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.242 0.758 38 H 0.154 0.846 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.257 5.933 7.537 12.657 hybrid contribution 2.227 -0.104 -0.103 2.232 sum -6.030 5.829 7.434 11.207 Atomic orbital electron populations 1.21766 0.95655 1.01527 1.00858 1.21279 0.95473 0.95709 1.00155 1.21899 1.00959 0.96502 1.01094 1.21437 0.92519 1.01261 0.97560 1.21468 0.98374 0.99537 0.94353 0.88681 1.21785 1.01306 1.01451 0.95660 1.20641 0.82650 0.82358 0.85650 1.90726 1.47935 1.48329 1.47959 1.43530 1.08179 1.51948 1.26897 1.18291 0.90174 0.93062 0.87679 1.21827 0.92892 1.09034 1.01947 1.17612 0.92778 0.88160 0.88197 1.19493 0.89894 1.04212 1.35667 0.90236 1.25899 1.01577 0.94149 0.92628 1.69700 1.34418 1.09213 1.30028 0.86206 0.80564 0.79076 0.79889 1.18974 1.20330 1.18932 1.22021 0.94531 1.11108 1.02328 1.21777 0.94594 0.94505 0.93286 1.67190 1.35246 1.18729 1.05458 0.93413 0.93119 0.92712 0.88896 0.92866 0.93038 0.93159 0.91198 0.91879 0.92085 0.92091 0.91754 0.75829 0.84640 0.90940 0.87918 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.11 -1.44 2.71 -90.62 -0.25 -1.68 16 3 C -0.15 -1.70 8.83 37.16 0.33 -1.37 16 4 C -0.09 -1.13 3.79 -26.73 -0.10 -1.23 16 5 C -0.12 -1.52 2.62 -91.77 -0.24 -1.76 16 6 H 0.10 1.13 6.43 -51.92 -0.33 0.80 16 7 C -0.14 -1.57 9.13 37.16 0.34 -1.23 16 8 C 0.50 9.26 6.78 -10.99 -0.07 9.19 16 9 O -0.48 -10.63 12.36 5.57 0.07 -10.56 16 10 N -0.66 -12.90 5.29 -11.49 -0.06 -12.96 16 11 C 0.33 8.07 7.40 -154.70 -1.15 6.93 16 12 C -0.23 -5.89 8.60 -38.48 -0.33 -6.22 16 13 C 0.14 3.72 5.58 -106.55 -0.59 3.12 16 14 C -0.46 -11.91 9.11 -37.65 -0.34 -12.25 16 15 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 16 C 0.07 1.80 5.43 -17.34 -0.09 1.71 16 17 N -0.81 -19.96 10.64 55.55 0.59 -19.37 16 18 Si 0.92 18.21 29.56 -169.99 -5.03 13.19 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.28 -6.80 9.90 -38.70 -0.38 -7.18 16 23 C 0.11 2.72 11.15 -17.68 -0.20 2.52 16 24 N -0.55 -13.93 7.88 -12.52 -0.10 -14.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.59 5.99 -51.93 -0.31 1.28 16 29 H 0.05 0.64 6.72 -51.92 -0.35 0.29 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.64 7.34 -51.92 -0.38 0.26 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.41 6.66 7.93 -40.82 -0.32 6.34 16 38 H 0.14 3.44 6.19 -52.49 -0.33 3.11 16 39 H 0.28 6.32 8.29 -40.82 -0.34 5.99 16 40 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 41 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -30.08 333.19 -8.45 -38.54 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.21 Total: 10.92 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.74 Total: -10.76 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.43 Total: -46.35 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.08 -8.45 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545199338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.744 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds