Wall clock time and date at job start Mon Mar 30 2020 07:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46922 * 2 1 4 4 C 1.52996 * 109.47060 * 120.00457 * 2 1 3 5 5 C 1.53003 * 109.47045 * 174.41159 * 4 2 1 6 6 H 1.09007 * 109.47269 * 53.72993 * 5 4 2 7 7 C 1.52999 * 109.47084 * 173.72728 * 5 4 2 8 8 C 1.50693 * 109.47058 * 293.72873 * 5 4 2 9 9 O 1.21271 * 120.00115 * 0.02562 * 8 5 4 10 10 N 1.34782 * 119.99809 * 179.97438 * 8 5 4 11 11 C 1.39474 * 119.99857 * 184.49177 * 10 8 5 12 12 C 1.38593 * 119.58024 * 185.56469 * 11 10 8 13 13 C 1.40810 * 118.79866 * 179.97438 * 12 11 10 14 14 C 1.41538 * 120.99779 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00071 * 146.44730 * 14 13 12 16 16 C 1.40027 * 120.00110 * 326.43921 * 14 13 12 17 17 N 1.30746 * 119.99719 * 3.45912 * 16 14 13 18 18 Si 1.86795 * 120.00243 * 183.45701 * 16 14 13 19 19 H 1.48502 * 109.47231 * 60.00667 * 18 16 14 20 20 H 1.48500 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47457 * 300.00211 * 18 16 14 22 22 C 1.41176 * 118.00363 * 0.02562 * 13 12 11 23 23 C 1.37593 * 119.01826 * 0.02562 * 22 13 12 24 24 N 1.32085 * 121.10400 * 359.96970 * 23 22 13 25 25 H 1.09004 * 109.46746 * 299.99650 * 1 2 3 26 26 H 1.08993 * 109.47241 * 59.99848 * 1 2 3 27 27 H 1.09002 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46729 * 239.99795 * 2 1 3 29 29 H 1.09009 * 109.46815 * 185.42367 * 3 2 1 30 30 H 1.08995 * 109.47031 * 305.42129 * 3 2 1 31 31 H 1.08998 * 109.47205 * 65.42643 * 3 2 1 32 32 H 1.08998 * 109.47816 * 54.41169 * 4 2 1 33 33 H 1.09007 * 109.47112 * 294.40652 * 4 2 1 34 34 H 1.08996 * 109.47194 * 55.12212 * 7 5 4 35 35 H 1.09008 * 109.47021 * 175.11582 * 7 5 4 36 36 H 1.09004 * 109.47602 * 295.11516 * 7 5 4 37 37 H 0.96994 * 119.99996 * 4.49376 * 10 8 5 38 38 H 1.08001 * 120.59832 * 0.02562 * 12 11 10 39 39 H 0.97001 * 120.00152 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.49441 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.44512 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5635 -0.8441 1.1809 6 1 4.0006 0.1411 1.0177 7 6 4.0880 -1.4230 2.4965 8 6 3.9434 -1.7569 0.0436 9 8 3.0807 -2.2592 -0.6449 10 7 5.2422 -2.0140 -0.2091 11 6 5.5981 -2.7823 -1.3174 12 6 6.9241 -3.1388 -1.5053 13 6 7.2650 -3.9152 -2.6295 14 6 8.6046 -4.3060 -2.8665 15 1 8.8153 -5.2584 -3.3300 16 6 9.6566 -3.4577 -2.5000 17 7 9.4052 -2.3355 -1.8781 18 14 11.4193 -3.9294 -2.8996 19 1 11.5716 -4.0752 -4.3696 20 1 12.3383 -2.8711 -2.4090 21 1 11.7495 -5.2169 -2.2376 22 6 6.2305 -4.2922 -3.5132 23 6 4.9427 -3.8894 -3.2437 24 7 4.6646 -3.1611 -2.1774 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1257 1.4440 -0.0971 30 1 1.5995 1.9835 -0.8374 31 1 1.7581 1.9275 0.9346 32 1 1.5973 -1.7160 1.3006 33 1 1.7607 -0.1530 2.1364 34 1 3.5863 -2.3683 2.7030 35 1 5.1620 -1.5915 2.4167 36 1 3.8895 -0.7216 3.3069 37 1 5.9292 -1.6648 0.3798 38 1 7.6821 -2.8275 -0.8018 39 1 10.1339 -1.7480 -1.6238 40 1 6.4467 -4.8879 -4.3877 41 1 4.1461 -4.1735 -3.9153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545199338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:30 Heat of formation + Delta-G solvation = -43.101693 kcal Electronic energy + Delta-G solvation = -21399.721164 eV Core-core repulsion = 18277.952455 eV Total energy + Delta-G solvation = -3121.768709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43704 -39.85762 -37.40465 -36.02301 -35.48643 -33.86504 -32.41507 -30.33806 -28.01904 -27.90107 -27.43090 -25.06687 -23.80830 -22.66141 -21.18918 -20.60871 -19.44823 -18.36691 -17.54036 -16.99931 -16.31048 -16.10061 -16.00348 -15.64811 -15.35749 -15.09227 -14.63611 -14.35073 -14.31103 -14.15930 -13.60821 -13.24719 -13.12945 -13.03147 -12.86326 -12.79350 -12.65818 -12.56674 -12.32168 -12.13851 -11.89850 -11.65224 -11.43022 -11.31516 -11.26594 -11.14030 -10.69851 -9.85520 -9.59134 -8.85570 -8.51978 -6.59960 0.73467 1.00942 1.41290 1.52176 1.55678 1.94228 2.20431 2.22464 2.84683 3.60890 3.69348 3.80396 3.95581 4.12881 4.22231 4.34897 4.44321 4.49379 4.73770 4.79277 4.82930 4.84573 4.89438 4.90994 4.92565 5.01034 5.03693 5.09948 5.10225 5.17258 5.26933 5.31549 5.39754 5.46581 5.53140 5.62345 5.69337 5.95714 6.16426 6.49993 6.62310 6.79491 6.85981 7.37402 7.82049 8.34129 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.004126 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.616242 B = 6784.582533 C = 7280.403197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.104 4.104 6 H 0.115 0.885 7 C -0.142 4.142 8 C 0.496 3.504 9 O -0.519 6.519 10 N -0.655 5.655 11 C 0.331 3.669 12 C -0.250 4.250 13 C 0.112 3.888 14 C -0.491 4.491 15 H 0.081 0.919 16 C 0.035 3.965 17 N -0.828 5.828 18 Si 0.992 3.008 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.290 4.290 23 C 0.107 3.893 24 N -0.571 5.571 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.420 0.580 38 H 0.131 0.869 39 H 0.289 0.711 40 H 0.117 0.883 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 7.087 9.259 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.200 4.200 4 C -0.124 4.124 5 C -0.125 4.125 6 H 0.133 0.867 7 C -0.199 4.199 8 C 0.283 3.717 9 O -0.392 6.392 10 N -0.302 5.302 11 C 0.104 3.896 12 C -0.275 4.275 13 C 0.104 3.896 14 C -0.523 4.523 15 H 0.100 0.900 16 C -0.180 4.180 17 N -0.455 5.455 18 Si 0.813 3.187 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.313 4.313 23 C -0.047 4.047 24 N -0.291 5.291 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.258 0.742 38 H 0.149 0.851 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.721 7.245 9.084 13.951 hybrid contribution 1.996 -0.482 -0.577 2.133 sum -5.725 6.763 8.507 12.284 Atomic orbital electron populations 1.21734 0.94478 1.01162 1.02093 1.21231 0.96581 0.96509 0.98603 1.21864 1.00415 0.95261 1.02490 1.21459 0.91726 1.00706 0.98542 1.21514 0.99085 0.98876 0.92994 0.86724 1.21815 1.01198 1.01824 0.95061 1.21731 0.81488 0.82133 0.86321 1.90709 1.48830 1.49976 1.49701 1.43625 1.09444 1.51284 1.25892 1.18558 0.89805 0.92747 0.88482 1.21803 0.93336 1.10228 1.02143 1.18045 0.93745 0.88898 0.88944 1.19790 0.90541 1.04969 1.36982 0.90040 1.26788 1.05569 0.93711 0.91922 1.69751 1.36155 1.09777 1.29770 0.85094 0.74952 0.79115 0.79582 1.18771 1.19070 1.18303 1.22199 0.94556 1.11752 1.02839 1.22232 0.95265 0.93821 0.93348 1.67326 1.35792 1.19669 1.06264 0.90987 0.93041 0.93908 0.93539 0.93541 0.93093 0.90563 0.93129 0.88281 0.92958 0.91879 0.88346 0.74225 0.85131 0.90018 0.86515 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 2 C -0.11 -2.86 2.71 -10.80 -0.03 -2.88 16 3 C -0.14 -3.01 8.83 71.98 0.64 -2.38 16 4 C -0.09 -2.01 3.79 30.59 0.12 -1.90 16 5 C -0.10 -2.54 2.62 -11.54 -0.03 -2.57 16 6 H 0.11 2.42 6.43 -2.38 -0.02 2.40 16 7 C -0.14 -2.70 9.13 71.98 0.66 -2.04 16 8 C 0.50 18.41 6.78 87.65 0.59 19.00 16 9 O -0.52 -23.78 12.36 -3.00 -0.04 -23.81 16 10 N -0.66 -25.93 5.29 -308.67 -1.63 -27.56 16 11 C 0.33 16.45 7.40 132.75 0.98 17.43 16 12 C -0.25 -13.07 8.60 22.98 0.20 -12.87 16 13 C 0.11 6.07 5.58 -21.12 -0.12 5.95 16 14 C -0.49 -25.83 9.11 23.52 0.21 -25.61 16 15 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 16 C 0.03 1.68 5.43 85.29 0.46 2.15 16 17 N -0.83 -41.01 10.64 21.84 0.23 -40.78 16 18 Si 0.99 36.66 29.56 68.60 2.03 38.68 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 C -0.29 -14.61 9.90 22.84 0.23 -14.38 16 23 C 0.11 5.27 11.15 84.50 0.94 6.22 16 24 N -0.57 -29.83 7.88 -193.53 -1.53 -31.36 16 25 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.65 5.99 -2.38 -0.01 1.63 16 29 H 0.05 1.02 6.72 -2.38 -0.02 1.01 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.38 7.91 -2.39 -0.02 1.36 16 33 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.18 7.34 -2.38 -0.02 1.17 16 36 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.42 13.73 7.93 -92.71 -0.73 13.00 16 38 H 0.13 6.82 6.19 -2.91 -0.02 6.81 16 39 H 0.29 12.89 8.29 -92.71 -0.77 12.12 16 40 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 41 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -67.30 333.19 4.87 -62.43 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.29 Total: 38.65 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.51 Total: -16.26 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -2.93 Total: -99.70 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.04 Total: -23.81 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.68 kcal Total: -67.30 4.87 -62.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545199338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.330 kcal (2) G-P(sol) polarization free energy of solvation -67.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds