Wall clock time and date at job start Mon Mar 30 2020 07:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46692 * 2 1 4 4 C 1.52999 * 109.46819 * 239.99757 * 2 1 3 5 5 C 1.50707 * 109.46798 * 175.00390 * 4 2 1 6 6 C 1.38227 * 119.62024 * 124.97813 * 5 4 2 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 304.99564 * 5 4 2 11 11 N 1.46503 * 109.47002 * 119.99893 * 2 1 3 12 12 C 1.34773 * 119.99867 * 274.99850 * 11 2 1 13 13 O 1.21285 * 120.00270 * 359.97438 * 12 11 2 14 14 C 1.50700 * 120.00326 * 180.02562 * 12 11 2 15 15 C 1.52993 * 109.47477 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47370 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47601 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99550 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99579 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00392 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47491 * 89.99814 * 21 19 17 23 23 H 1.48499 * 109.47138 * 209.99839 * 21 19 17 24 24 H 1.48501 * 109.47013 * 329.99414 * 21 19 17 25 25 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47261 * 299.99940 * 1 2 3 27 27 H 1.09003 * 109.47618 * 60.00229 * 1 2 3 28 28 H 1.08996 * 109.47454 * 55.00357 * 4 2 1 29 29 H 1.09007 * 109.47108 * 294.99725 * 4 2 1 30 30 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 31 31 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 32 32 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 33 33 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 34 34 H 0.97000 * 120.00141 * 94.99697 * 11 2 1 35 35 H 1.09005 * 109.46922 * 300.00164 * 14 12 11 36 36 H 1.08999 * 109.46848 * 59.99999 * 14 12 11 37 37 H 1.09005 * 109.47212 * 300.00028 * 15 14 12 38 38 H 1.09004 * 109.47346 * 59.99782 * 15 14 12 39 39 H 1.09005 * 109.46924 * 300.00141 * 16 15 14 40 40 H 1.09003 * 109.47614 * 59.99739 * 16 15 14 41 41 H 0.97005 * 119.99853 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3044 -1.7636 -1.4125 7 6 5.6850 -1.6545 -1.4747 8 6 6.2500 -0.3891 -1.4238 9 6 5.4235 0.7138 -1.3242 10 7 4.1133 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3571 13 8 1.8591 1.1587 2.4115 14 6 2.6499 -0.7284 3.5875 15 6 2.7018 0.2549 4.7585 16 6 3.2129 -0.4659 6.0075 17 6 3.2648 0.5027 7.1608 18 1 2.9637 1.5298 7.0172 19 6 3.6965 0.0776 8.3992 20 7 3.7412 0.9229 9.4059 21 14 4.2180 -1.6988 8.6475 22 1 5.6709 -1.8316 8.3710 23 1 3.9418 -2.1045 10.0491 24 1 3.4556 -2.5727 7.7200 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2618 -2.1370 29 1 1.7515 -1.7716 -1.2055 30 1 3.8305 -2.7335 -1.4447 31 1 6.3060 -2.5343 -1.5567 32 1 7.3223 -0.2669 -1.4663 33 1 5.8556 1.7030 -1.2881 34 1 2.2490 -1.6318 1.1527 35 1 1.9776 -1.5507 3.8326 36 1 3.6492 -1.1201 3.3979 37 1 3.3743 1.0769 4.5132 38 1 1.7027 0.6472 4.9482 39 1 2.5408 -1.2882 6.2530 40 1 4.2122 -0.8579 5.8176 41 1 4.0454 0.6239 10.2771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594145479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:41 Heat of formation + Delta-G solvation = -27.943672 kcal Electronic energy + Delta-G solvation = -20680.811931 eV Core-core repulsion = 17559.700523 eV Total energy + Delta-G solvation = -3121.111408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57143 -39.45033 -36.27767 -34.21572 -32.88066 -32.46661 -32.02587 -30.77180 -28.17541 -27.28493 -24.04799 -23.78695 -22.65435 -21.15371 -20.33729 -19.76860 -17.24508 -16.86813 -16.64067 -16.43600 -15.86527 -15.63884 -15.24312 -14.49547 -14.19356 -14.14866 -13.64979 -13.41475 -13.36370 -13.03936 -12.67652 -12.48549 -12.45229 -12.18597 -11.89610 -11.67804 -11.50541 -11.09995 -10.93117 -10.75105 -10.12759 -9.94754 -9.78805 -9.65894 -9.62883 -9.35971 -9.21600 -9.08658 -8.95542 -8.48243 -5.97940 -3.95388 0.84627 1.03288 2.98553 3.32425 3.33211 3.40077 3.43316 3.53480 4.01198 4.30669 4.49486 4.59768 4.67925 4.82378 4.88232 5.01955 5.08639 5.17959 5.35196 5.35458 5.37487 5.45655 5.50889 5.61439 5.62946 5.66006 5.83538 5.90921 6.01260 6.13633 6.19705 6.44411 6.59824 6.61561 6.74820 6.97005 7.42301 7.49972 7.66048 7.77720 7.86068 8.52635 8.62862 9.09194 9.64246 11.15865 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.003629 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.670325 B = 7713.599819 C = 8448.982474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 H 0.099 0.901 4 C -0.078 4.078 5 C 0.133 3.867 6 C -0.174 4.174 7 C -0.073 4.073 8 C -0.180 4.180 9 C 0.106 3.894 10 N -0.476 5.476 11 N -0.735 5.735 12 C 0.514 3.486 13 O -0.533 6.533 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.014 4.014 17 C -0.518 4.518 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.394 0.606 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -9.233 -27.106 28.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.043 3.957 3 H 0.117 0.883 4 C -0.116 4.116 5 C -0.005 4.005 6 C -0.193 4.193 7 C -0.099 4.099 8 C -0.199 4.199 9 C -0.051 4.051 10 N -0.185 5.185 11 N -0.388 5.388 12 C 0.301 3.699 13 O -0.408 6.408 14 C -0.181 4.181 15 C -0.125 4.125 16 C -0.052 4.052 17 C -0.556 4.556 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.544 5.544 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.173 0.827 34 H 0.228 0.772 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.331 -7.597 -26.806 27.863 hybrid contribution 1.150 -2.212 0.171 2.499 sum 0.819 -9.809 -26.634 28.395 Atomic orbital electron populations 1.22191 0.95191 1.01971 1.02819 1.20845 0.93612 0.98359 0.82930 0.88263 1.20904 0.89386 1.01998 0.99304 1.21168 0.96463 0.88519 0.94300 1.21967 0.94620 0.99614 1.03144 1.21580 0.94993 0.97907 0.95434 1.22159 1.01560 0.93691 1.02526 1.22789 0.88822 0.99264 0.94213 1.67461 1.12771 1.26522 1.11738 1.46176 1.69006 1.13690 1.09913 1.21086 0.76789 0.87506 0.84488 1.90689 1.49085 1.16132 1.84890 1.21856 1.01967 1.00689 0.93621 1.21249 1.02096 0.96768 0.92342 1.19608 0.95434 0.96493 0.93631 1.21176 1.43663 0.97814 0.92907 0.90928 1.25050 0.95256 0.97363 0.95980 1.69932 1.48125 1.34870 1.01507 0.86760 0.79204 0.85946 0.77236 1.20384 1.21442 1.19073 0.92596 0.91626 0.91761 0.88511 0.89811 0.84920 0.84912 0.84835 0.82719 0.77221 0.89516 0.89751 0.92192 0.92082 0.96697 0.97204 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.15 1.61 2.50 -67.93 -0.17 1.44 16 3 H 0.10 1.42 7.23 -51.93 -0.38 1.05 16 4 C -0.08 -0.61 5.16 -27.88 -0.14 -0.76 16 5 C 0.13 1.30 5.91 -82.58 -0.49 0.82 16 6 C -0.17 -1.38 9.71 -39.44 -0.38 -1.77 16 7 C -0.07 -0.56 10.18 -39.28 -0.40 -0.96 16 8 C -0.18 -1.49 10.11 -39.44 -0.40 -1.89 16 9 C 0.11 1.08 11.18 -17.55 -0.20 0.88 16 10 N -0.48 -5.65 9.78 -9.47 -0.09 -5.75 16 11 N -0.73 -8.68 4.79 -53.81 -0.26 -8.94 16 12 C 0.51 8.36 7.79 -10.99 -0.09 8.28 16 13 O -0.53 -10.95 15.64 5.55 0.09 -10.87 16 14 C -0.14 -2.30 5.70 -27.89 -0.16 -2.46 16 15 C -0.09 -1.87 4.44 -26.74 -0.12 -1.99 16 16 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 17 C -0.52 -15.42 9.66 -34.44 -0.33 -15.75 16 18 H 0.07 2.35 7.99 -52.49 -0.42 1.93 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -28.74 13.96 55.43 0.77 -27.96 16 21 Si 0.88 22.05 27.47 -169.99 -4.67 17.39 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.46 7.87 -51.92 -0.41 0.05 16 30 H 0.13 0.71 7.95 -52.49 -0.42 0.29 16 31 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.39 3.54 8.60 -40.82 -0.35 3.19 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 38 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 LS Contribution 345.69 15.07 5.21 5.21 Total: -1.00 -36.24 345.69 -8.23 -44.48 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.55 Total: 0.48 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -2.73 Total: -14.04 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.42 Total: -42.65 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.24 -8.23 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594145479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.536 kcal (2) G-P(sol) polarization free energy of solvation -36.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds