Wall clock time and date at job start Mon Mar 30 2020 07:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46692 * 2 1 4 4 C 1.52999 * 109.46819 * 239.99757 * 2 1 3 5 5 C 1.50707 * 109.46798 * 175.00390 * 4 2 1 6 6 C 1.38227 * 119.62024 * 124.97813 * 5 4 2 7 7 C 1.38627 * 119.15702 * 179.78495 * 6 5 4 8 8 C 1.38669 * 118.42389 * 0.47826 * 7 6 5 9 9 C 1.38186 * 119.16143 * 359.49762 * 8 7 6 10 10 N 1.31856 * 119.61172 * 304.99564 * 5 4 2 11 11 N 1.46503 * 109.47002 * 119.99893 * 2 1 3 12 12 C 1.34773 * 119.99867 * 274.99850 * 11 2 1 13 13 O 1.21285 * 120.00270 * 359.97438 * 12 11 2 14 14 C 1.50700 * 120.00326 * 180.02562 * 12 11 2 15 15 C 1.52993 * 109.47477 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47370 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47601 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99550 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00047 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99579 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00392 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47491 * 89.99814 * 21 19 17 23 23 H 1.48499 * 109.47138 * 209.99839 * 21 19 17 24 24 H 1.48501 * 109.47013 * 329.99414 * 21 19 17 25 25 H 1.09002 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47261 * 299.99940 * 1 2 3 27 27 H 1.09003 * 109.47618 * 60.00229 * 1 2 3 28 28 H 1.08996 * 109.47454 * 55.00357 * 4 2 1 29 29 H 1.09007 * 109.47108 * 294.99725 * 4 2 1 30 30 H 1.07998 * 120.41916 * 359.97438 * 6 5 4 31 31 H 1.08008 * 120.78688 * 180.22921 * 7 6 5 32 32 H 1.08002 * 120.42244 * 179.78279 * 8 7 6 33 33 H 1.07996 * 119.61757 * 180.25243 * 9 8 7 34 34 H 0.97000 * 120.00141 * 94.99697 * 11 2 1 35 35 H 1.09005 * 109.46922 * 300.00164 * 14 12 11 36 36 H 1.08999 * 109.46848 * 59.99999 * 14 12 11 37 37 H 1.09005 * 109.47212 * 300.00028 * 15 14 12 38 38 H 1.09004 * 109.47346 * 59.99782 * 15 14 12 39 39 H 1.09005 * 109.46924 * 300.00141 * 16 15 14 40 40 H 1.09003 * 109.47614 * 59.99739 * 16 15 14 41 41 H 0.97005 * 119.99853 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3044 -1.7636 -1.4125 7 6 5.6850 -1.6545 -1.4747 8 6 6.2500 -0.3891 -1.4238 9 6 5.4235 0.7138 -1.3242 10 7 4.1133 0.5726 -1.2719 11 7 2.0183 -0.6906 1.1962 12 6 2.1470 -0.0182 2.3571 13 8 1.8591 1.1587 2.4115 14 6 2.6499 -0.7284 3.5875 15 6 2.7018 0.2549 4.7585 16 6 3.2129 -0.4659 6.0075 17 6 3.2648 0.5027 7.1608 18 1 2.9637 1.5298 7.0172 19 6 3.6965 0.0776 8.3992 20 7 3.7412 0.9229 9.4059 21 14 4.2180 -1.6988 8.6475 22 1 5.6709 -1.8316 8.3710 23 1 3.9418 -2.1045 10.0491 24 1 3.4556 -2.5727 7.7200 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2618 -2.1370 29 1 1.7515 -1.7716 -1.2055 30 1 3.8305 -2.7335 -1.4447 31 1 6.3060 -2.5343 -1.5567 32 1 7.3223 -0.2669 -1.4663 33 1 5.8556 1.7030 -1.2881 34 1 2.2490 -1.6318 1.1527 35 1 1.9776 -1.5507 3.8326 36 1 3.6492 -1.1201 3.3979 37 1 3.3743 1.0769 4.5132 38 1 1.7027 0.6472 4.9482 39 1 2.5408 -1.2882 6.2530 40 1 4.2122 -0.8579 5.8176 41 1 4.0454 0.6239 10.2771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594145479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:40 Heat of formation + Delta-G solvation = -53.208281 kcal Electronic energy + Delta-G solvation = -20681.907486 eV Core-core repulsion = 17559.700523 eV Total energy + Delta-G solvation = -3122.206964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30597 -40.59358 -37.29558 -36.08171 -34.17937 -33.61151 -33.14015 -31.75924 -29.91669 -27.95106 -25.78031 -24.47176 -23.49714 -22.38584 -21.57709 -21.25862 -18.94663 -18.04821 -17.62433 -17.45351 -16.77580 -16.58915 -16.35175 -16.15469 -15.34605 -15.10830 -14.85983 -14.72753 -14.66629 -14.02039 -13.90186 -13.75741 -13.42974 -13.14815 -13.08903 -12.87337 -12.70066 -12.49988 -12.30616 -11.92899 -11.78869 -11.72502 -11.51718 -11.34187 -10.78750 -10.75610 -10.72118 -10.28919 -10.06994 -9.82784 -8.28208 -6.34197 0.22003 0.42822 1.37733 1.41726 1.53938 1.72208 2.27572 2.38888 2.88371 3.06688 3.40341 3.69097 3.89773 4.00573 4.09752 4.15877 4.22569 4.29217 4.31592 4.34980 4.36844 4.68136 4.71380 4.76370 4.82581 4.88420 4.90150 4.94250 4.97163 5.02261 5.14525 5.28935 5.31199 5.34588 5.52113 5.58331 5.63545 5.67404 5.85702 6.30174 6.63661 6.74345 7.13163 7.30044 7.37318 8.89686 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.003629 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.670325 B = 7713.599819 C = 8448.982474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.057 0.943 4 C -0.068 4.068 5 C 0.111 3.889 6 C -0.169 4.169 7 C -0.078 4.078 8 C -0.182 4.182 9 C 0.076 3.924 10 N -0.516 5.516 11 N -0.711 5.711 12 C 0.511 3.489 13 O -0.589 6.589 14 C -0.130 4.130 15 C -0.080 4.080 16 C -0.008 4.008 17 C -0.542 4.542 18 H 0.017 0.983 19 C -0.003 4.003 20 N -0.957 5.957 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.235 1.235 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.414 0.586 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 -14.233 -28.995 32.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.075 0.925 4 C -0.106 4.106 5 C -0.027 4.027 6 C -0.188 4.188 7 C -0.104 4.104 8 C -0.201 4.201 9 C -0.080 4.080 10 N -0.226 5.226 11 N -0.364 5.364 12 C 0.299 3.701 13 O -0.469 6.469 14 C -0.170 4.170 15 C -0.118 4.118 16 C -0.045 4.045 17 C -0.580 4.580 18 H 0.036 0.964 19 C -0.199 4.199 20 N -0.598 5.598 21 Si 0.785 3.215 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.158 1.158 25 H 0.100 0.900 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.139 0.861 30 H 0.184 0.816 31 H 0.180 0.820 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.251 0.749 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.220 -12.634 -28.753 31.407 hybrid contribution 0.976 -0.523 0.733 1.328 sum 1.196 -13.156 -28.020 30.978 Atomic orbital electron populations 1.22135 0.94148 1.03323 1.01956 1.20853 0.94330 0.96732 0.83834 0.92511 1.20922 0.88412 1.03708 0.97555 1.21536 0.97438 0.88640 0.95056 1.22332 0.94758 1.00256 1.01498 1.22013 0.95498 0.98457 0.94416 1.22426 1.02455 0.93643 1.01619 1.23009 0.88967 1.00374 0.95644 1.67410 1.13765 1.28375 1.13079 1.45944 1.67218 1.14406 1.08808 1.21119 0.76435 0.86823 0.85733 1.90682 1.51819 1.18578 1.85814 1.21703 1.04376 0.99642 0.91242 1.21026 0.99708 0.97200 0.93879 1.19536 0.96800 0.95671 0.92482 1.21555 1.44016 0.96782 0.95619 0.96438 1.26211 0.94894 1.03633 0.95149 1.70116 1.49318 1.38007 1.02358 0.85477 0.79591 0.78565 0.77881 1.18892 1.21042 1.15816 0.89997 0.95045 0.90153 0.87597 0.86126 0.81634 0.82030 0.82890 0.82628 0.74909 0.86301 0.87159 0.95077 0.94557 0.94947 0.95408 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.48 71.98 0.68 -2.19 16 2 C 0.15 3.06 2.50 44.99 0.11 3.17 16 3 H 0.06 1.71 7.23 -2.39 -0.02 1.69 16 4 C -0.07 -0.89 5.16 29.85 0.15 -0.73 16 5 C 0.11 1.95 5.91 42.55 0.25 2.20 16 6 C -0.17 -2.07 9.71 22.36 0.22 -1.85 16 7 C -0.08 -0.94 10.18 22.47 0.23 -0.72 16 8 C -0.18 -2.73 10.11 22.36 0.23 -2.51 16 9 C 0.08 1.57 11.18 84.67 0.95 2.51 16 10 N -0.52 -12.32 9.78 -183.88 -1.80 -14.11 16 11 N -0.71 -15.35 4.79 -442.53 -2.12 -17.47 16 12 C 0.51 16.39 7.79 87.66 0.68 17.07 16 13 O -0.59 -25.45 15.64 -3.04 -0.05 -25.50 16 14 C -0.13 -3.95 5.70 29.85 0.17 -3.78 16 15 C -0.08 -3.50 4.44 30.59 0.14 -3.36 16 16 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 17 C -0.54 -33.33 9.66 25.60 0.25 -33.09 16 18 H 0.02 1.21 7.99 -2.91 -0.02 1.19 16 19 C 0.00 -0.18 5.47 84.65 0.46 0.28 16 20 N -0.96 -62.62 13.96 21.45 0.30 -62.32 16 21 Si 0.96 44.36 27.47 68.60 1.88 46.25 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.12 0.68 7.87 -2.38 -0.02 0.66 16 30 H 0.17 0.84 7.95 -2.91 -0.02 0.82 16 31 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.41 5.72 8.60 -92.71 -0.80 4.92 16 35 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.11 2.82 8.14 -2.39 -0.02 2.81 16 37 H 0.03 1.49 8.10 -2.38 -0.02 1.48 16 38 H 0.04 1.72 8.10 -2.38 -0.02 1.70 16 39 H 0.03 1.45 7.20 -2.38 -0.02 1.44 16 40 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 41 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -85.87 345.69 3.01 -82.86 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.15 Total: 13.53 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 4.64 Total: -23.23 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -3.62 Total: -93.91 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -85.87 3.01 -82.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594145479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.651 kcal (2) G-P(sol) polarization free energy of solvation -85.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds