Wall clock time and date at job start Mon Mar 30 2020 07:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99885 * 2 1 4 4 O 1.21294 * 119.99877 * 174.66277 * 3 2 1 5 5 C 1.50701 * 120.00101 * 354.65653 * 3 2 1 6 6 H 1.09006 * 109.46749 * 40.00479 * 5 3 2 7 7 N 1.46896 * 109.46943 * 160.00155 * 5 3 2 8 8 C 1.52995 * 109.47307 * 280.00357 * 5 3 2 9 9 C 1.53001 * 109.46996 * 174.99968 * 8 5 3 10 10 C 1.53003 * 109.47217 * 179.97438 * 9 8 5 11 11 C 1.50698 * 109.47235 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00090 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00107 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00210 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47274 * 59.99826 * 15 13 11 17 17 H 1.48494 * 109.47418 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47040 * 299.99747 * 15 13 11 19 19 C 1.39925 * 120.00368 * 180.02562 * 2 1 3 20 20 C 1.38871 * 120.06999 * 65.45654 * 19 2 1 21 21 C 1.38115 * 119.92753 * 179.76672 * 20 19 2 22 22 C 1.38277 * 120.07021 * 0.49128 * 21 20 19 23 23 C 1.38278 * 120.14245 * 359.76092 * 22 21 20 24 24 C 1.38111 * 120.07144 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46877 * 89.99966 * 1 2 3 26 26 H 1.08999 * 109.46796 * 210.00081 * 1 2 3 27 27 H 1.09000 * 109.46928 * 329.99968 * 1 2 3 28 28 H 1.00900 * 110.99999 * 60.00462 * 7 5 3 29 29 H 1.00904 * 110.99932 * 183.95626 * 7 5 3 30 30 H 1.09001 * 109.47122 * 54.99703 * 8 5 3 31 31 H 1.09003 * 109.47081 * 294.99768 * 8 5 3 32 32 H 1.08991 * 109.47408 * 59.99907 * 9 8 5 33 33 H 1.09003 * 109.47042 * 299.99824 * 9 8 5 34 34 H 1.09000 * 109.47226 * 300.00320 * 10 9 8 35 35 H 1.09001 * 109.47010 * 59.99669 * 10 9 8 36 36 H 0.96994 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.08005 * 120.03675 * 359.97438 * 20 19 2 38 38 H 1.08008 * 119.96276 * 180.25113 * 21 20 19 39 39 H 1.08000 * 119.92817 * 179.73966 * 22 21 20 40 40 H 1.08004 * 119.96685 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.04194 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3478 1.1695 0.0977 5 6 1.3902 2.4695 -0.1215 6 1 0.4762 2.4198 0.4703 7 7 2.2335 3.5668 0.3712 8 6 1.0349 2.7186 -1.5887 9 6 0.1686 3.9750 -1.6974 10 6 -0.1862 4.2245 -3.1647 11 6 -1.0400 5.4616 -3.2717 12 1 -1.3036 6.0144 -2.3822 13 6 -1.4856 5.8872 -4.5051 14 7 -1.1659 5.2131 -5.5882 15 14 -2.5433 7.4211 -4.6379 16 1 -1.7936 8.5870 -4.1055 17 1 -2.8878 7.6631 -6.0619 18 1 -3.7892 7.2328 -3.8519 19 6 2.1647 -1.2117 -0.0005 20 6 2.0803 -2.0635 -1.0941 21 6 2.7760 -3.2566 -1.0936 22 6 3.5478 -3.6081 -0.0014 23 6 3.6298 -2.7646 1.0912 24 6 2.9400 -1.5681 1.0951 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.0877 3.6338 -0.1617 29 1 1.7311 4.4418 0.3604 30 1 0.4846 1.8628 -1.9796 31 1 1.9494 2.8568 -2.1656 32 1 0.7189 4.8307 -1.3065 33 1 -0.7459 3.8368 -1.1205 34 1 0.7284 4.3627 -3.7412 35 1 -0.7364 3.3687 -3.5560 36 1 -1.4790 5.5127 -6.4560 37 1 1.4740 -1.7916 -1.9456 38 1 2.7140 -3.9176 -1.9455 39 1 4.0876 -4.5435 -0.0017 40 1 4.2331 -3.0421 1.9430 41 1 3.0040 -0.9098 1.9490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594426644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:02 Heat of formation + Delta-G solvation = -17.803852 kcal Electronic energy + Delta-G solvation = -20899.063426 eV Core-core repulsion = 17778.391714 eV Total energy + Delta-G solvation = -3120.671712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67596 -38.73245 -36.06827 -35.58825 -33.39400 -31.27959 -31.09566 -30.41867 -27.86858 -26.86918 -25.50815 -23.19980 -22.69090 -21.75371 -20.24201 -19.31259 -17.71992 -17.15226 -16.36994 -16.23634 -15.77475 -14.97780 -14.84561 -14.55047 -14.35975 -14.30777 -13.78093 -13.57025 -13.45579 -12.91583 -12.81556 -12.66874 -12.38964 -11.96138 -11.85765 -11.72617 -11.39252 -11.19620 -10.81822 -10.76206 -10.60629 -9.85318 -9.78686 -9.46793 -9.40454 -9.17687 -9.09751 -8.52354 -8.50759 -8.39663 -6.04968 -4.08201 1.10284 1.23885 2.61965 2.79126 3.29587 3.34508 3.36498 3.58491 4.40904 4.55044 4.77898 4.78521 4.79794 4.87919 4.94670 5.10307 5.25088 5.26820 5.29897 5.30982 5.43529 5.46072 5.59721 5.74056 5.84548 5.92386 6.15806 6.22188 6.31546 6.33603 6.44758 6.53750 6.70028 6.89248 6.98857 7.07697 7.28559 7.57077 7.59897 7.72623 7.93840 8.16955 8.35563 8.98741 9.56383 11.06210 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.003238 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.899232 B = 8644.541940 C = 9132.654168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.580 5.580 3 C 0.527 3.473 4 O -0.519 6.519 5 C 0.077 3.923 6 H 0.103 0.897 7 N -0.831 5.831 8 C -0.146 4.146 9 C -0.108 4.108 10 C 0.023 3.977 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.145 3.855 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.105 4.105 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.349 0.651 29 H 0.353 0.647 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -16.227 12.378 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.311 5.311 3 C 0.316 3.684 4 O -0.393 6.393 5 C -0.038 4.038 6 H 0.120 0.880 7 N -0.363 5.363 8 C -0.186 4.186 9 C -0.146 4.146 10 C -0.014 4.014 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.055 3.945 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.163 0.837 29 H 0.168 0.832 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.574 -16.567 12.933 21.743 hybrid contribution -0.859 1.221 -1.256 1.951 sum 4.716 -15.346 11.676 19.851 Atomic orbital electron populations 1.22000 0.77984 1.03677 1.02970 1.45434 1.07188 1.03864 1.74617 1.20917 0.87974 0.84788 0.74718 1.90682 1.14279 1.86883 1.47416 1.21494 0.96064 0.89164 0.97113 0.87974 1.58711 1.08990 1.07477 1.61130 1.22400 1.01459 1.01056 0.93702 1.21650 0.97308 0.93960 1.01632 1.19068 0.96506 0.96702 0.89151 1.21204 1.31734 1.10482 0.92755 0.92719 1.25031 0.96384 0.97084 0.95931 1.69951 1.45726 1.39553 0.98203 0.86653 0.80857 0.83497 0.76972 1.20218 1.21274 1.20211 1.17610 0.96314 0.86651 0.93958 1.21275 1.00693 0.95045 0.97136 1.21024 0.97013 0.96404 0.98560 1.21172 0.99357 0.99827 0.93923 1.21036 0.99246 0.94038 0.98724 1.21248 0.97268 0.96431 0.97501 0.91566 0.90794 0.89935 0.83699 0.83226 0.91498 0.91751 0.93304 0.93009 0.96723 0.96636 0.92893 0.85627 0.85656 0.85947 0.85774 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 9.60 59.84 0.57 1.30 16 2 N -0.58 -7.43 2.93 -120.82 -0.35 -7.79 16 3 C 0.53 8.07 6.79 -10.98 -0.07 8.00 16 4 O -0.52 -9.64 15.75 5.55 0.09 -9.55 16 5 C 0.08 1.08 2.52 -68.87 -0.17 0.91 16 6 H 0.10 1.27 6.21 -51.93 -0.32 0.94 16 7 N -0.83 -11.81 8.94 -5.66 -0.05 -11.86 16 8 C -0.15 -2.35 4.79 -26.73 -0.13 -2.48 16 9 C -0.11 -2.03 4.92 -26.73 -0.13 -2.16 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.15 1.86 4.88 -83.69 -0.41 1.46 16 20 C -0.12 -1.39 9.82 -39.39 -0.39 -1.78 16 21 C -0.11 -1.09 10.04 -39.61 -0.40 -1.48 16 22 C -0.12 -1.15 10.04 -39.55 -0.40 -1.55 16 23 C -0.11 -1.13 10.04 -39.61 -0.40 -1.53 16 24 C -0.10 -1.28 9.23 -39.39 -0.36 -1.65 16 25 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 26 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 28 H 0.35 5.18 8.58 -39.29 -0.34 4.84 16 29 H 0.35 4.63 7.55 -39.29 -0.30 4.34 16 30 H 0.07 1.04 7.24 -51.93 -0.38 0.67 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -32.78 341.12 -8.46 -41.24 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.17 Total: 6.21 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.83 Total: -13.80 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.33 Total: -45.56 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.78 -8.46 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594426644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.437 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds