Wall clock time and date at job start Mon Mar 30 2020 07:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 119.99885 * 2 1 4 4 O 1.21294 * 119.99877 * 174.66277 * 3 2 1 5 5 C 1.50701 * 120.00101 * 354.65653 * 3 2 1 6 6 H 1.09006 * 109.46749 * 40.00479 * 5 3 2 7 7 N 1.46896 * 109.46943 * 160.00155 * 5 3 2 8 8 C 1.52995 * 109.47307 * 280.00357 * 5 3 2 9 9 C 1.53001 * 109.46996 * 174.99968 * 8 5 3 10 10 C 1.53003 * 109.47217 * 179.97438 * 9 8 5 11 11 C 1.50698 * 109.47235 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00090 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00107 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00210 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47274 * 59.99826 * 15 13 11 17 17 H 1.48494 * 109.47418 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47040 * 299.99747 * 15 13 11 19 19 C 1.39925 * 120.00368 * 180.02562 * 2 1 3 20 20 C 1.38871 * 120.06999 * 65.45654 * 19 2 1 21 21 C 1.38115 * 119.92753 * 179.76672 * 20 19 2 22 22 C 1.38277 * 120.07021 * 0.49128 * 21 20 19 23 23 C 1.38278 * 120.14245 * 359.76092 * 22 21 20 24 24 C 1.38111 * 120.07144 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46877 * 89.99966 * 1 2 3 26 26 H 1.08999 * 109.46796 * 210.00081 * 1 2 3 27 27 H 1.09000 * 109.46928 * 329.99968 * 1 2 3 28 28 H 1.00900 * 110.99999 * 60.00462 * 7 5 3 29 29 H 1.00904 * 110.99932 * 183.95626 * 7 5 3 30 30 H 1.09001 * 109.47122 * 54.99703 * 8 5 3 31 31 H 1.09003 * 109.47081 * 294.99768 * 8 5 3 32 32 H 1.08991 * 109.47408 * 59.99907 * 9 8 5 33 33 H 1.09003 * 109.47042 * 299.99824 * 9 8 5 34 34 H 1.09000 * 109.47226 * 300.00320 * 10 9 8 35 35 H 1.09001 * 109.47010 * 59.99669 * 10 9 8 36 36 H 0.96994 * 120.00229 * 180.02562 * 14 13 11 37 37 H 1.08005 * 120.03675 * 359.97438 * 20 19 2 38 38 H 1.08008 * 119.96276 * 180.25113 * 21 20 19 39 39 H 1.08000 * 119.92817 * 179.73966 * 22 21 20 40 40 H 1.08004 * 119.96685 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.04194 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3478 1.1695 0.0977 5 6 1.3902 2.4695 -0.1215 6 1 0.4762 2.4198 0.4703 7 7 2.2335 3.5668 0.3712 8 6 1.0349 2.7186 -1.5887 9 6 0.1686 3.9750 -1.6974 10 6 -0.1862 4.2245 -3.1647 11 6 -1.0400 5.4616 -3.2717 12 1 -1.3036 6.0144 -2.3822 13 6 -1.4856 5.8872 -4.5051 14 7 -1.1659 5.2131 -5.5882 15 14 -2.5433 7.4211 -4.6379 16 1 -1.7936 8.5870 -4.1055 17 1 -2.8878 7.6631 -6.0619 18 1 -3.7892 7.2328 -3.8519 19 6 2.1647 -1.2117 -0.0005 20 6 2.0803 -2.0635 -1.0941 21 6 2.7760 -3.2566 -1.0936 22 6 3.5478 -3.6081 -0.0014 23 6 3.6298 -2.7646 1.0912 24 6 2.9400 -1.5681 1.0951 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.0877 3.6338 -0.1617 29 1 1.7311 4.4418 0.3604 30 1 0.4846 1.8628 -1.9796 31 1 1.9494 2.8568 -2.1656 32 1 0.7189 4.8307 -1.3065 33 1 -0.7459 3.8368 -1.1205 34 1 0.7284 4.3627 -3.7412 35 1 -0.7364 3.3687 -3.5560 36 1 -1.4790 5.5127 -6.4560 37 1 1.4740 -1.7916 -1.9456 38 1 2.7140 -3.9176 -1.9455 39 1 4.0876 -4.5435 -0.0017 40 1 4.2331 -3.0421 1.9430 41 1 3.0040 -0.9098 1.9490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594426644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:02 Heat of formation + Delta-G solvation = -38.577234 kcal Electronic energy + Delta-G solvation = -20899.964228 eV Core-core repulsion = 17778.391714 eV Total energy + Delta-G solvation = -3121.572514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.71402 -39.67499 -37.44109 -36.60683 -35.29279 -33.02396 -31.89875 -31.27831 -29.40653 -27.82637 -26.97235 -24.69543 -23.54905 -22.92515 -21.82115 -20.34710 -18.78666 -18.46648 -18.14065 -17.09954 -16.79080 -16.52018 -16.18294 -16.00590 -15.48586 -15.36908 -14.83464 -14.66122 -14.35616 -14.30774 -14.05128 -13.69652 -13.65374 -13.56073 -13.25031 -12.84909 -12.54841 -12.52391 -12.44545 -12.36185 -12.14575 -11.50354 -11.43194 -11.28323 -10.82192 -10.55435 -10.36521 -9.91485 -9.72840 -9.41149 -8.20254 -6.31605 0.26958 0.42374 1.40616 1.43206 1.45289 1.51104 1.82536 2.40896 2.77577 3.13285 3.47301 3.61438 3.89353 3.96579 3.99234 4.03408 4.17687 4.24053 4.35618 4.46582 4.50715 4.54433 4.65012 4.67791 4.72542 4.86167 4.98942 5.06317 5.16650 5.22865 5.38070 5.46009 5.51584 5.55267 5.61015 5.72359 5.84747 5.94658 6.08783 6.21587 6.23436 6.45294 6.86316 7.05486 7.38248 8.91282 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030799 B = 0.003238 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.899232 B = 8644.541940 C = 9132.654168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.574 5.574 3 C 0.522 3.478 4 O -0.560 6.560 5 C 0.087 3.913 6 H 0.127 0.873 7 N -0.832 5.832 8 C -0.133 4.133 9 C -0.093 4.093 10 C 0.024 3.976 11 C -0.542 4.542 12 H 0.064 0.936 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.117 3.883 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.125 4.125 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.345 0.655 29 H 0.359 0.641 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.067 0.933 34 H -0.017 1.017 35 H -0.007 1.007 36 H 0.263 0.737 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -16.840 13.489 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.304 5.304 3 C 0.311 3.689 4 O -0.437 6.437 5 C -0.028 4.028 6 H 0.144 0.856 7 N -0.364 5.364 8 C -0.173 4.173 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.212 1.212 18 H -0.189 1.189 19 C 0.027 3.973 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.001 0.999 35 H 0.011 0.989 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.769 -17.197 14.067 22.723 hybrid contribution -0.593 1.307 -1.615 2.161 sum 4.176 -15.890 12.451 20.615 Atomic orbital electron populations 1.22236 0.76151 1.05235 1.03645 1.45479 1.08358 1.03378 1.73137 1.21094 0.87579 0.85736 0.74442 1.90653 1.15898 1.87524 1.49648 1.21423 0.96795 0.88817 0.95737 0.85563 1.58722 1.08929 1.07888 1.60893 1.22205 1.00032 0.99878 0.95180 1.21424 0.98581 0.95552 0.97469 1.18990 0.94412 0.95176 0.92691 1.21703 1.31783 1.11308 0.93224 0.91738 1.25995 0.97832 1.00516 0.95621 1.70094 1.47155 1.41522 0.98794 0.85522 0.79285 0.79347 0.77044 1.19266 1.21172 1.18864 1.17882 0.97475 0.86965 0.94946 1.21420 1.01446 0.95759 0.96872 1.21386 0.96131 0.95966 0.99568 1.21566 0.98677 1.00619 0.93054 1.21354 0.98759 0.93268 0.99889 1.21321 0.98307 0.97472 0.97341 0.91265 0.88948 0.88752 0.84207 0.82505 0.91079 0.93657 0.92562 0.91407 0.99891 0.98911 0.92857 0.85441 0.83179 0.82851 0.83587 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 9.60 127.77 1.23 2.44 16 2 N -0.57 -14.51 2.93 -654.55 -1.92 -16.43 16 3 C 0.52 15.97 6.79 87.66 0.60 16.57 16 4 O -0.56 -21.25 15.75 -3.07 -0.05 -21.30 16 5 C 0.09 2.38 2.52 44.17 0.11 2.49 16 6 H 0.13 2.84 6.21 -2.38 -0.01 2.82 16 7 N -0.83 -23.09 8.94 -171.81 -1.54 -24.62 16 8 C -0.13 -4.24 4.79 30.59 0.15 -4.09 16 9 C -0.09 -3.42 4.92 30.60 0.15 -3.27 16 10 C 0.02 1.24 4.97 29.85 0.15 1.39 16 11 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 14 N -0.94 -56.62 13.29 21.45 0.28 -56.33 16 15 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 C 0.12 2.99 4.88 38.15 0.19 3.18 16 20 C -0.14 -3.00 9.82 22.39 0.22 -2.79 16 21 C -0.11 -1.97 10.04 22.25 0.22 -1.75 16 22 C -0.12 -1.94 10.04 22.29 0.22 -1.72 16 23 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 24 C -0.12 -3.04 9.23 22.39 0.21 -2.83 16 25 H 0.07 1.21 7.71 -2.39 -0.02 1.19 16 26 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 27 H 0.09 1.44 6.02 -2.39 -0.01 1.42 16 28 H 0.34 10.27 8.58 -89.69 -0.77 9.50 16 29 H 0.36 8.97 7.55 -89.69 -0.68 8.30 16 30 H 0.07 2.19 7.24 -2.39 -0.02 2.18 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.99 6.87 -2.39 -0.02 1.98 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.11 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -71.79 341.12 2.75 -69.04 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.41 Total: 25.82 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.36 Total: -21.66 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -3.17 Total: -97.38 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.79 2.75 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594426644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.459 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds