Wall clock time and date at job start Mon Mar 30 2020 07:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00143 * 2 1 4 4 H 1.08997 * 112.84745 * 341.19033 * 3 2 1 5 5 C 1.53776 * 113.61690 * 112.49835 * 3 2 1 6 6 C 1.53788 * 87.08205 * 89.11838 * 5 3 2 7 7 H 1.08996 * 113.68523 * 270.87496 * 6 5 3 8 8 C 1.52998 * 113.61377 * 139.98119 * 6 5 3 9 9 N 1.46504 * 109.47129 * 87.50308 * 8 6 5 10 10 C 1.39849 * 119.99632 * 179.97438 * 9 8 6 11 11 C 1.39594 * 119.84320 * 0.02562 * 10 9 8 12 12 C 1.38063 * 120.55022 * 179.97438 * 11 10 9 13 13 C 1.38733 * 120.21873 * 359.97383 * 12 11 10 14 14 N 1.38860 * 120.16417 * 180.02562 * 13 12 11 15 15 C 1.41565 * 119.67491 * 0.02600 * 13 12 11 16 16 C 1.41031 * 120.26586 * 179.72422 * 15 13 12 17 17 H 1.07994 * 119.99970 * 333.68170 * 16 15 13 18 18 C 1.39887 * 119.99864 * 153.68255 * 16 15 13 19 19 N 1.30899 * 120.00017 * 344.03049 * 18 16 15 20 20 Si 1.86794 * 119.99830 * 164.02526 * 18 16 15 21 21 H 1.48500 * 109.47409 * 60.00405 * 20 18 16 22 22 H 1.48502 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47421 * 300.00056 * 20 18 16 24 24 C 1.38011 * 119.83504 * 179.97438 * 10 9 8 25 25 C 1.53779 * 87.07917 * 25.43073 * 6 5 3 26 26 H 1.08992 * 109.47544 * 300.00616 * 1 2 3 27 27 H 1.09003 * 109.46677 * 60.00513 * 1 2 3 28 28 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.09004 * 113.61834 * 334.56819 * 5 3 2 30 30 H 1.09003 * 113.61578 * 203.66227 * 5 3 2 31 31 H 1.08995 * 109.47458 * 327.50093 * 8 6 5 32 32 H 1.08998 * 109.46527 * 207.50079 * 8 6 5 33 33 H 0.96996 * 119.99777 * 0.02562 * 9 8 6 34 34 H 1.07996 * 119.72611 * 0.02562 * 11 10 9 35 35 H 1.07998 * 119.88941 * 179.97438 * 12 11 10 36 36 H 0.96996 * 120.00605 * 180.02562 * 14 13 12 37 37 H 0.97006 * 119.99751 * 0.02562 * 14 13 12 38 38 H 0.97002 * 120.00212 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.11215 * 0.02562 * 24 10 9 40 40 H 1.09007 * 113.61220 * 89.12120 * 25 6 5 41 41 H 1.08999 * 113.61361 * 220.01773 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0788 -0.3239 5 6 2.7533 1.6489 1.3017 6 6 4.0062 1.0331 0.6566 7 1 4.1097 -0.0371 0.8355 8 6 5.2909 1.8113 0.9476 9 7 5.8762 1.3355 2.2035 10 6 7.0635 1.9005 2.6798 11 6 7.6877 2.9181 1.9563 12 6 8.8599 3.4866 2.4132 13 6 9.4307 3.0512 3.6004 14 7 10.6094 3.6242 4.0592 15 6 8.8056 2.0198 4.3417 16 6 9.3780 1.5636 5.5472 17 1 10.4421 1.6546 5.7080 18 6 8.5676 0.9933 6.5345 19 7 7.2698 1.1586 6.4919 20 14 9.3375 -0.0041 7.9135 21 1 10.2826 0.8513 8.6752 22 1 8.2717 -0.4965 8.8229 23 1 10.0701 -1.1608 7.3384 24 6 7.6117 1.4501 3.8636 25 6 3.3756 1.3718 -0.7045 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 2.3926 1.0965 2.1694 30 1 2.8389 2.7198 1.4862 31 1 5.0609 2.8733 1.0332 32 1 6.0006 1.6576 0.1347 33 1 5.4406 0.6281 2.7042 34 1 7.2497 3.2640 1.0317 35 1 9.3341 4.2729 1.8447 36 1 11.0067 3.3177 4.8893 37 1 11.0356 4.3310 3.5495 38 1 6.7078 0.7634 7.1768 39 1 7.1256 0.6630 4.4209 40 1 3.6312 2.3670 -1.0686 41 1 3.5171 0.5956 -1.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714604030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:21 Heat of formation + Delta-G solvation = -2.322918 kcal Electronic energy + Delta-G solvation = -20773.317749 eV Core-core repulsion = 17653.317340 eV Total energy + Delta-G solvation = -3120.000409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.70141 -37.84870 -36.42194 -34.68095 -33.40329 -31.62424 -29.36851 -28.15597 -26.73067 -25.75914 -25.23667 -24.55846 -22.41815 -20.93222 -19.65279 -19.39045 -17.00855 -16.71511 -16.01493 -15.57055 -15.42105 -15.32047 -14.87279 -14.76047 -14.52208 -13.98626 -13.38438 -13.03482 -12.62689 -12.44763 -12.34801 -12.09296 -11.84714 -11.76459 -11.54201 -11.30204 -11.05009 -10.97206 -10.67163 -10.61573 -10.34085 -10.16762 -9.80352 -9.64599 -9.55532 -9.27419 -9.00772 -7.69555 -7.17055 -6.56935 -5.47435 -4.02462 2.96083 3.15158 3.18137 3.35317 3.51514 3.53402 4.06821 4.34598 4.59852 4.70131 4.83278 4.86759 4.98141 5.13695 5.19566 5.30524 5.43855 5.46810 5.62897 5.68677 5.79328 5.89936 5.98380 6.02744 6.14038 6.32544 6.41223 6.51834 6.68267 7.08638 7.17198 7.20660 7.36398 7.54487 7.75946 7.93273 8.05382 8.17726 8.50706 8.81454 8.95966 9.00019 9.05213 9.30357 9.38983 10.42200 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003866 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.699372 B = 7241.306610 C = 8462.781957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.060 3.940 4 H 0.071 0.929 5 C -0.151 4.151 6 C -0.111 4.111 7 H 0.095 0.905 8 C 0.149 3.851 9 N -0.761 5.761 10 C 0.178 3.822 11 C -0.255 4.255 12 C -0.153 4.153 13 C 0.084 3.916 14 N -0.889 5.889 15 C 0.096 3.904 16 C -0.466 4.466 17 H 0.070 0.930 18 C 0.077 3.923 19 N -0.801 5.801 20 Si 0.901 3.099 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.267 1.267 24 C -0.201 4.201 25 C -0.132 4.132 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.388 0.612 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -0.065 -9.602 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C 0.002 3.998 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.130 4.130 7 H 0.113 0.887 8 C 0.024 3.976 9 N -0.396 5.396 10 C 0.079 3.921 11 C -0.279 4.279 12 C -0.177 4.177 13 C -0.017 4.017 14 N -0.432 5.432 15 C 0.091 3.909 16 C -0.497 4.497 17 H 0.088 0.912 18 C -0.139 4.139 19 N -0.428 5.428 20 Si 0.727 3.273 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.225 4.225 25 C -0.170 4.170 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.220 0.780 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.216 0.784 37 H 0.198 0.802 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.097 -0.224 -9.644 13.965 hybrid contribution 0.150 -0.264 1.027 1.071 sum -9.947 -0.488 -8.617 13.169 Atomic orbital electron populations 1.22788 0.81167 1.02650 0.99894 1.87887 1.19483 1.26816 1.94625 1.23125 0.94355 0.84791 0.97571 0.91109 1.23519 0.96438 1.01518 0.97406 1.22674 0.93854 1.00668 0.95800 0.88660 1.20987 0.92347 0.96648 0.87650 1.44314 1.26462 1.44014 1.24853 1.17529 0.86442 0.94270 0.93859 1.19601 1.00613 1.05350 1.02380 1.19702 0.98303 1.02877 0.96856 1.17858 0.90642 0.97209 0.95999 1.41803 1.27635 1.44898 1.28858 1.16964 0.92124 0.89765 0.92090 1.19088 0.94749 1.36148 0.99694 0.91187 1.25735 0.94584 0.94879 0.98689 1.69873 1.04819 1.35538 1.32543 0.86495 0.79507 0.80791 0.80523 1.19403 1.20643 1.19180 1.20485 1.00881 1.05365 0.95801 1.23182 0.94096 1.02575 0.97146 0.93999 0.94134 0.89703 0.90902 0.89114 0.93637 0.93656 0.77965 0.89786 0.89842 0.78367 0.80155 0.91448 0.86555 0.88815 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.37 -4.40 10.63 -35.23 -0.37 -4.78 16 3 C 0.06 0.65 4.37 -25.92 -0.11 0.53 16 4 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 5 C -0.15 -1.85 7.46 -25.92 -0.19 -2.04 16 6 C -0.11 -1.47 3.69 -89.81 -0.33 -1.80 16 7 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 8 C 0.15 2.39 4.74 -4.04 -0.02 2.37 16 9 N -0.76 -15.07 5.74 -58.64 -0.34 -15.41 16 10 C 0.18 4.25 6.64 -83.78 -0.56 3.69 16 11 C -0.26 -5.95 9.31 -39.14 -0.36 -6.31 16 12 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 13 C 0.08 2.07 6.79 -83.23 -0.56 1.51 16 14 N -0.89 -18.61 8.98 32.75 0.29 -18.32 16 15 C 0.10 2.59 5.57 -106.66 -0.59 2.00 16 16 C -0.47 -12.43 8.47 -37.91 -0.32 -12.75 16 17 H 0.07 1.78 6.71 -52.49 -0.35 1.42 16 18 C 0.08 1.98 5.16 -17.33 -0.09 1.89 16 19 N -0.80 -21.30 10.98 55.55 0.61 -20.69 16 20 Si 0.90 19.24 29.59 -169.99 -5.03 14.21 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 24 C -0.20 -5.33 8.50 -38.75 -0.33 -5.66 16 25 C -0.13 -1.44 7.47 -25.92 -0.19 -1.63 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 31 H 0.05 0.74 7.64 -51.93 -0.40 0.34 16 32 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.39 7.44 8.48 -40.82 -0.35 7.10 16 34 H 0.08 1.77 6.69 -52.49 -0.35 1.42 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.39 7.97 7.06 -40.82 -0.29 7.68 16 37 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 38 H 0.27 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.12 3.21 6.23 -52.49 -0.33 2.88 16 40 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -29.53 334.78 -8.92 -38.45 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -6.17 Total: 22.32 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.96 Total: -20.84 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.57 Total: -54.42 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.37 Total: -4.78 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.53 -8.92 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714604030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.129 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds