Wall clock time and date at job start Mon Mar 30 2020 07:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00143 * 2 1 4 4 H 1.08997 * 112.84745 * 341.19033 * 3 2 1 5 5 C 1.53776 * 113.61690 * 112.49835 * 3 2 1 6 6 C 1.53788 * 87.08205 * 89.11838 * 5 3 2 7 7 H 1.08996 * 113.68523 * 270.87496 * 6 5 3 8 8 C 1.52998 * 113.61377 * 139.98119 * 6 5 3 9 9 N 1.46504 * 109.47129 * 87.50308 * 8 6 5 10 10 C 1.39849 * 119.99632 * 179.97438 * 9 8 6 11 11 C 1.39594 * 119.84320 * 0.02562 * 10 9 8 12 12 C 1.38063 * 120.55022 * 179.97438 * 11 10 9 13 13 C 1.38733 * 120.21873 * 359.97383 * 12 11 10 14 14 N 1.38860 * 120.16417 * 180.02562 * 13 12 11 15 15 C 1.41565 * 119.67491 * 0.02600 * 13 12 11 16 16 C 1.41031 * 120.26586 * 179.72422 * 15 13 12 17 17 H 1.07994 * 119.99970 * 333.68170 * 16 15 13 18 18 C 1.39887 * 119.99864 * 153.68255 * 16 15 13 19 19 N 1.30899 * 120.00017 * 344.03049 * 18 16 15 20 20 Si 1.86794 * 119.99830 * 164.02526 * 18 16 15 21 21 H 1.48500 * 109.47409 * 60.00405 * 20 18 16 22 22 H 1.48502 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47421 * 300.00056 * 20 18 16 24 24 C 1.38011 * 119.83504 * 179.97438 * 10 9 8 25 25 C 1.53779 * 87.07917 * 25.43073 * 6 5 3 26 26 H 1.08992 * 109.47544 * 300.00616 * 1 2 3 27 27 H 1.09003 * 109.46677 * 60.00513 * 1 2 3 28 28 H 1.08997 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.09004 * 113.61834 * 334.56819 * 5 3 2 30 30 H 1.09003 * 113.61578 * 203.66227 * 5 3 2 31 31 H 1.08995 * 109.47458 * 327.50093 * 8 6 5 32 32 H 1.08998 * 109.46527 * 207.50079 * 8 6 5 33 33 H 0.96996 * 119.99777 * 0.02562 * 9 8 6 34 34 H 1.07996 * 119.72611 * 0.02562 * 11 10 9 35 35 H 1.07998 * 119.88941 * 179.97438 * 12 11 10 36 36 H 0.96996 * 120.00605 * 180.02562 * 14 13 12 37 37 H 0.97006 * 119.99751 * 0.02562 * 14 13 12 38 38 H 0.97002 * 120.00212 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.11215 * 0.02562 * 24 10 9 40 40 H 1.09007 * 113.61220 * 89.12120 * 25 6 5 41 41 H 1.08999 * 113.61361 * 220.01773 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0788 -0.3239 5 6 2.7533 1.6489 1.3017 6 6 4.0062 1.0331 0.6566 7 1 4.1097 -0.0371 0.8355 8 6 5.2909 1.8113 0.9476 9 7 5.8762 1.3355 2.2035 10 6 7.0635 1.9005 2.6798 11 6 7.6877 2.9181 1.9563 12 6 8.8599 3.4866 2.4132 13 6 9.4307 3.0512 3.6004 14 7 10.6094 3.6242 4.0592 15 6 8.8056 2.0198 4.3417 16 6 9.3780 1.5636 5.5472 17 1 10.4421 1.6546 5.7080 18 6 8.5676 0.9933 6.5345 19 7 7.2698 1.1586 6.4919 20 14 9.3375 -0.0041 7.9135 21 1 10.2826 0.8513 8.6752 22 1 8.2717 -0.4965 8.8229 23 1 10.0701 -1.1608 7.3384 24 6 7.6117 1.4501 3.8636 25 6 3.3756 1.3718 -0.7045 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 2.3926 1.0965 2.1694 30 1 2.8389 2.7198 1.4862 31 1 5.0609 2.8733 1.0332 32 1 6.0006 1.6576 0.1347 33 1 5.4406 0.6281 2.7042 34 1 7.2497 3.2640 1.0317 35 1 9.3341 4.2729 1.8447 36 1 11.0067 3.3177 4.8893 37 1 11.0356 4.3310 3.5495 38 1 6.7078 0.7634 7.1768 39 1 7.1256 0.6630 4.4209 40 1 3.6312 2.3670 -1.0686 41 1 3.5171 0.5956 -1.4565 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714604030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:21 Heat of formation + Delta-G solvation = -21.196136 kcal Electronic energy + Delta-G solvation = -20774.136153 eV Core-core repulsion = 17653.317340 eV Total energy + Delta-G solvation = -3120.818813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66539 -39.62260 -37.52819 -36.16928 -35.30463 -33.25743 -31.29091 -29.59740 -27.64258 -26.93641 -26.67785 -26.16006 -23.73828 -22.64112 -21.42270 -20.42133 -18.88140 -17.98444 -17.31619 -17.20773 -16.75413 -16.49815 -16.25805 -16.06675 -15.97967 -15.27199 -14.68271 -14.32227 -14.19516 -14.04950 -13.72671 -13.47997 -13.31272 -13.14061 -12.91951 -12.79179 -12.68746 -12.45193 -12.10973 -11.91647 -11.65930 -11.57017 -11.31435 -11.14276 -10.96893 -10.91705 -10.43979 -9.37875 -9.12240 -8.48658 -7.27671 -5.99519 1.14330 1.41084 1.50411 1.53609 1.67322 2.27819 2.75982 2.91159 2.98850 3.66954 3.72218 3.78713 3.86634 3.98036 3.99151 4.33972 4.47933 4.55894 4.57546 4.62071 4.80110 4.81054 4.83529 4.86982 4.87691 4.92606 5.12586 5.24754 5.27167 5.35761 5.40583 5.47092 5.68771 5.90923 6.08010 6.18281 6.30711 6.32450 6.58271 6.98658 7.08087 7.15675 7.28274 7.49001 7.68491 8.52266 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003866 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.699372 B = 7241.306610 C = 8462.781957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.066 3.934 4 H 0.095 0.905 5 C -0.153 4.153 6 C -0.113 4.113 7 H 0.081 0.919 8 C 0.151 3.849 9 N -0.760 5.760 10 C 0.172 3.828 11 C -0.258 4.258 12 C -0.158 4.158 13 C 0.069 3.931 14 N -0.879 5.879 15 C 0.061 3.939 16 C -0.494 4.494 17 H 0.074 0.926 18 C 0.033 3.967 19 N -0.834 5.834 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.266 1.266 24 C -0.227 4.227 25 C -0.122 4.122 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.387 0.613 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 0.544 -10.680 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.113 0.887 5 C -0.191 4.191 6 C -0.132 4.132 7 H 0.099 0.901 8 C 0.026 3.974 9 N -0.393 5.393 10 C 0.072 3.928 11 C -0.282 4.282 12 C -0.182 4.182 13 C -0.033 4.033 14 N -0.423 5.423 15 C 0.055 3.945 16 C -0.525 4.525 17 H 0.092 0.908 18 C -0.180 4.180 19 N -0.462 5.462 20 Si 0.797 3.203 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.191 1.191 24 C -0.252 4.252 25 C -0.160 4.160 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.508 0.403 -10.753 15.040 hybrid contribution 0.222 -0.422 1.271 1.357 sum -10.286 -0.019 -9.482 13.990 Atomic orbital electron populations 1.22983 0.79503 1.03715 1.00894 1.87855 1.21446 1.27534 1.94667 1.23104 0.94820 0.85154 0.96128 0.88669 1.23539 0.96278 1.01469 0.97809 1.22618 0.92860 0.99481 0.98219 0.90081 1.21149 0.93393 0.97102 0.85714 1.44448 1.25339 1.43589 1.25941 1.17659 0.87549 0.94374 0.93237 1.19924 1.00549 1.04724 1.02986 1.20065 0.98310 1.03254 0.96573 1.18034 0.91747 0.97127 0.96440 1.41675 1.26597 1.45023 1.29019 1.17364 0.92996 0.91041 0.93056 1.19361 0.95148 1.37638 1.00356 0.90781 1.26568 0.94916 0.95409 1.01056 1.69964 1.06150 1.36442 1.33635 0.85377 0.78651 0.78990 0.77331 1.18414 1.19997 1.19071 1.20455 1.01687 1.05923 0.97113 1.23184 0.93526 1.03622 0.95620 0.93606 0.92455 0.88769 0.92317 0.88637 0.93319 0.93578 0.78066 0.87388 0.87003 0.78236 0.78190 0.91127 0.88740 0.86944 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 113.37 1.23 1.60 16 2 O -0.40 -8.83 10.63 -148.98 -1.58 -10.42 16 3 C 0.07 1.29 4.37 31.12 0.14 1.42 16 4 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 5 C -0.15 -3.60 7.46 31.12 0.23 -3.37 16 6 C -0.11 -2.89 3.69 -10.27 -0.04 -2.92 16 7 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 8 C 0.15 4.68 4.74 86.38 0.41 5.09 16 9 N -0.76 -30.33 5.74 -339.44 -1.95 -32.28 16 10 C 0.17 8.32 6.64 38.14 0.25 8.58 16 11 C -0.26 -11.73 9.31 22.56 0.21 -11.52 16 12 C -0.16 -7.20 9.86 22.35 0.22 -6.98 16 13 C 0.07 3.38 6.79 38.97 0.26 3.65 16 14 N -0.88 -36.11 8.98 -50.31 -0.45 -36.57 16 15 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 16 C -0.49 -26.97 8.47 23.35 0.20 -26.77 16 17 H 0.07 3.82 6.71 -2.91 -0.02 3.80 16 18 C 0.03 1.73 5.16 85.23 0.44 2.17 16 19 N -0.83 -45.73 10.98 21.82 0.24 -45.49 16 20 Si 0.97 39.98 29.59 68.60 2.03 42.01 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 C -0.23 -12.47 8.50 22.81 0.19 -12.28 16 25 C -0.12 -2.38 7.47 31.12 0.23 -2.15 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 2.14 7.90 -2.39 -0.02 2.12 16 31 H 0.05 1.50 7.64 -2.39 -0.02 1.48 16 32 H 0.05 1.43 7.94 -2.39 -0.02 1.42 16 33 H 0.39 15.35 8.48 -92.71 -0.79 14.57 16 34 H 0.11 4.31 6.69 -2.91 -0.02 4.30 16 35 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.39 15.85 7.06 -92.71 -0.65 15.20 16 37 H 0.39 13.19 8.83 -92.70 -0.82 12.37 16 38 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.09 5.50 6.23 -2.91 -0.02 5.48 16 40 H 0.11 1.79 8.10 -2.38 -0.02 1.77 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.38 334.78 0.95 -63.43 By element: Atomic # 1 Polarization: 60.74 SS G_CDS: -1.20 Total: 59.54 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.86 Total: -40.23 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -2.16 Total: -114.34 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.58 Total: -10.42 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -64.38 0.95 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714604030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.236 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds