Wall clock time and date at job start Mon Mar 30 2020 07:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99884 * 2 1 4 4 C 1.50703 * 109.47292 * 89.99874 * 3 2 1 5 5 H 1.08002 * 119.99753 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00326 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00461 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47120 * 59.99951 * 8 6 4 10 10 H 1.48496 * 109.47503 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47116 * 300.00198 * 8 6 4 12 12 C 1.34772 * 119.99788 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99918 * 184.96671 * 12 2 1 14 14 C 1.50709 * 120.00110 * 4.96533 * 12 2 1 15 15 C 1.47198 * 109.46699 * 54.87320 * 14 12 2 16 16 N 3.66186 * 64.44102 * 222.75455 * 2 1 3 17 17 C 1.52994 * 109.46977 * 294.87117 * 14 12 2 18 18 C 1.52998 * 109.47198 * 239.99657 * 17 14 12 19 19 C 1.52997 * 109.47303 * 300.00402 * 18 17 14 20 20 C 1.53003 * 109.46992 * 59.99926 * 19 18 17 21 21 C 1.52998 * 109.46823 * 174.87159 * 14 12 2 22 22 C 1.53001 * 109.47377 * 60.00569 * 21 14 12 23 23 C 1.52994 * 109.47566 * 59.99342 * 22 21 14 24 24 H 1.09003 * 109.46594 * 94.96422 * 1 2 3 25 25 H 1.09001 * 109.47204 * 214.96121 * 1 2 3 26 26 H 1.08997 * 109.46991 * 334.96938 * 1 2 3 27 27 H 1.09001 * 109.46784 * 209.99559 * 3 2 1 28 28 H 1.08997 * 109.47404 * 329.99594 * 3 2 1 29 29 H 0.97002 * 120.00697 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47497 * 0.02562 * 17 14 12 31 31 H 1.08998 * 109.46867 * 120.00085 * 17 14 12 32 32 H 1.09001 * 109.47160 * 180.02562 * 18 17 14 33 33 H 1.09000 * 109.46862 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47179 * 299.99829 * 19 18 17 35 35 H 1.09000 * 109.47005 * 239.99591 * 20 19 18 36 36 H 1.09004 * 109.47039 * 119.99906 * 20 19 18 37 37 H 1.08997 * 109.47801 * 300.00036 * 21 14 12 38 38 H 1.09003 * 109.46782 * 299.99185 * 22 21 14 39 39 H 1.08997 * 109.47115 * 179.97438 * 22 21 14 40 40 H 1.08998 * 109.47497 * 240.00642 * 23 22 21 41 41 H 1.09002 * 109.47595 * 119.99999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5550 3.6171 0.6732 8 14 3.4375 3.4171 3.4339 9 1 4.2392 2.3820 4.1347 10 1 4.1812 4.7025 3.4339 11 1 2.1397 3.5955 4.1332 12 6 2.1388 -1.1672 0.0005 13 8 3.3482 -1.1691 0.0915 14 6 1.3895 -2.4700 -0.1119 15 6 0.5405 -2.4454 -1.3140 16 7 -0.1148 -2.4257 -2.2426 17 6 0.5135 -2.6629 1.1275 18 6 0.9273 -3.9466 1.8498 19 6 0.7507 -5.1405 0.9094 20 6 1.6269 -4.9475 -0.3300 21 6 2.3876 -3.6249 -0.2158 22 6 3.2701 -3.6505 1.0337 23 6 2.3941 -3.8434 2.2731 24 1 -0.3632 -0.0889 -1.0239 25 1 -0.3634 -0.8422 0.5889 26 1 -0.3633 0.9311 0.4348 27 1 3.1499 1.1383 -0.5138 28 1 1.6085 2.0283 -0.5139 29 1 4.0319 4.4430 0.8504 30 1 0.6390 -1.8122 1.7972 31 1 -0.5314 -2.7364 0.8260 32 1 0.3029 -4.0843 2.7325 33 1 1.0460 -6.0550 1.4239 34 1 -0.2942 -5.2140 0.6079 35 1 0.9981 -4.9294 -1.2202 36 1 2.3379 -5.7704 -0.4040 37 1 3.0117 -3.4875 -1.0988 38 1 3.8121 -2.7083 1.1150 39 1 3.9808 -4.4736 0.9598 40 1 2.5198 -2.9929 2.9430 41 1 2.6888 -4.7580 2.7877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906398564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:43 Heat of formation + Delta-G solvation = -12.301091 kcal Electronic energy + Delta-G solvation = -22840.281910 eV Core-core repulsion = 19719.848815 eV Total energy + Delta-G solvation = -3120.433095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47727 -38.27478 -36.33487 -35.02643 -32.81951 -31.69392 -31.35490 -30.72409 -27.75479 -26.14458 -24.16226 -22.90231 -22.55195 -22.02180 -19.61123 -18.17327 -17.00253 -16.59726 -16.54278 -15.93644 -15.22513 -14.61852 -14.52457 -14.45381 -13.82542 -13.54942 -13.07292 -12.85660 -12.63045 -12.54358 -12.32266 -12.20172 -12.07061 -12.06405 -11.87583 -11.73735 -11.57184 -11.51208 -11.20250 -10.95398 -10.68269 -10.59583 -10.26735 -10.12406 -9.92665 -9.88904 -9.68817 -8.77995 -8.46412 -7.74912 -6.07238 -4.12500 2.66302 2.76361 3.14428 3.30197 3.35080 3.37648 3.76329 3.92575 4.40758 4.45265 4.56246 4.67920 4.99543 5.05476 5.13055 5.16679 5.23281 5.27502 5.33973 5.47668 5.53740 5.55951 5.64812 5.68558 5.83989 5.87913 5.92890 6.01920 6.11636 6.16150 6.22650 6.31385 6.39389 6.44629 6.77437 6.95716 7.35740 7.43755 7.54766 7.87600 8.17535 8.25394 8.78658 8.94756 9.52466 11.00940 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.006018 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.474694 B = 4651.972972 C = 5170.304674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.592 5.592 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.514 6.514 14 C 0.024 3.976 15 C 0.226 3.774 16 N -0.428 5.428 17 C -0.103 4.103 18 C -0.084 4.084 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.054 4.054 22 C -0.128 4.128 23 C -0.116 4.116 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 -15.957 2.254 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.323 5.323 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.303 3.697 13 O -0.390 6.390 14 C 0.016 3.984 15 C -0.092 4.092 16 N -0.103 5.103 17 C -0.141 4.141 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.074 4.074 22 C -0.165 4.165 23 C -0.153 4.153 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.385 -15.695 0.833 16.964 hybrid contribution 0.233 0.496 1.175 1.296 sum -6.152 -15.199 2.008 16.519 Atomic orbital electron populations 1.22021 0.81534 1.03722 1.00604 1.48147 1.06175 1.07652 1.70333 1.19367 0.92438 0.77699 0.97782 1.21347 1.36724 1.06381 0.92054 0.92310 1.24929 0.95319 0.96355 0.97429 1.69920 1.38192 1.14378 1.30842 0.86557 0.78367 0.77879 0.84616 1.20092 1.21205 1.20255 1.19581 0.87721 0.83816 0.78541 1.90606 1.13282 1.85780 1.49380 1.18645 0.93807 0.97591 0.88317 1.28616 0.93662 0.92900 0.94032 1.81202 1.09980 1.08679 1.10464 1.21803 0.98183 0.99791 0.94364 1.21071 0.97527 0.93777 0.97901 1.21567 0.99560 0.97970 0.96022 1.21639 0.98824 0.97114 0.97998 1.20823 0.94693 0.91031 1.00856 1.21878 0.97474 1.05023 0.92157 1.21591 0.93808 1.01831 0.98102 0.93925 0.91562 0.89971 0.93752 0.94823 0.92606 0.89070 0.90472 0.90300 0.91577 0.92120 0.92383 0.91034 0.89939 0.87444 0.91926 0.91475 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.88 59.85 0.53 1.61 16 2 N -0.59 -12.24 2.84 -182.95 -0.52 -12.76 16 3 C 0.25 6.27 5.10 -5.19 -0.03 6.24 16 4 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.52 10.18 5.92 -10.98 -0.07 10.11 16 13 O -0.51 -11.68 13.12 5.56 0.07 -11.61 16 14 C 0.02 0.35 0.27 -158.45 -0.04 0.31 16 15 C 0.23 3.50 9.85 -20.74 -0.20 3.29 16 16 N -0.43 -7.14 18.41 42.18 0.78 -6.36 16 17 C -0.10 -1.25 3.19 -26.74 -0.09 -1.34 16 18 C -0.08 -0.86 3.19 -90.62 -0.29 -1.15 16 19 C -0.11 -1.05 5.71 -26.73 -0.15 -1.21 16 20 C -0.12 -1.25 5.45 -26.73 -0.15 -1.40 16 21 C -0.05 -0.72 1.90 -90.62 -0.17 -0.89 16 22 C -0.13 -1.70 5.39 -26.73 -0.14 -1.84 16 23 C -0.12 -1.32 5.71 -26.73 -0.15 -1.47 16 24 H 0.04 0.69 7.31 -51.93 -0.38 0.31 16 25 H 0.07 0.91 4.09 -51.93 -0.21 0.70 16 26 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 27 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 28 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.09 1.22 6.74 -51.93 -0.35 0.87 16 31 H 0.08 0.82 7.05 -51.93 -0.37 0.46 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 7.23 -51.93 -0.38 0.27 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.11 1.81 5.33 -51.93 -0.28 1.54 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -30.69 316.53 -6.67 -37.35 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.11 Total: -1.47 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.37 Total: -0.81 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.99 Total: -44.50 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.69 -6.67 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906398564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.054 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds