Wall clock time and date at job start Mon Mar 30 2020 07:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99884 * 2 1 4 4 C 1.50703 * 109.47292 * 89.99874 * 3 2 1 5 5 H 1.08002 * 119.99753 * 359.97438 * 4 3 2 6 6 C 1.37868 * 120.00326 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00461 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47120 * 59.99951 * 8 6 4 10 10 H 1.48496 * 109.47503 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47116 * 300.00198 * 8 6 4 12 12 C 1.34772 * 119.99788 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99918 * 184.96671 * 12 2 1 14 14 C 1.50709 * 120.00110 * 4.96533 * 12 2 1 15 15 C 1.47198 * 109.46699 * 54.87320 * 14 12 2 16 16 N 3.66186 * 64.44102 * 222.75455 * 2 1 3 17 17 C 1.52994 * 109.46977 * 294.87117 * 14 12 2 18 18 C 1.52998 * 109.47198 * 239.99657 * 17 14 12 19 19 C 1.52997 * 109.47303 * 300.00402 * 18 17 14 20 20 C 1.53003 * 109.46992 * 59.99926 * 19 18 17 21 21 C 1.52998 * 109.46823 * 174.87159 * 14 12 2 22 22 C 1.53001 * 109.47377 * 60.00569 * 21 14 12 23 23 C 1.52994 * 109.47566 * 59.99342 * 22 21 14 24 24 H 1.09003 * 109.46594 * 94.96422 * 1 2 3 25 25 H 1.09001 * 109.47204 * 214.96121 * 1 2 3 26 26 H 1.08997 * 109.46991 * 334.96938 * 1 2 3 27 27 H 1.09001 * 109.46784 * 209.99559 * 3 2 1 28 28 H 1.08997 * 109.47404 * 329.99594 * 3 2 1 29 29 H 0.97002 * 120.00697 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47497 * 0.02562 * 17 14 12 31 31 H 1.08998 * 109.46867 * 120.00085 * 17 14 12 32 32 H 1.09001 * 109.47160 * 180.02562 * 18 17 14 33 33 H 1.09000 * 109.46862 * 179.97438 * 19 18 17 34 34 H 1.08998 * 109.47179 * 299.99829 * 19 18 17 35 35 H 1.09000 * 109.47005 * 239.99591 * 20 19 18 36 36 H 1.09004 * 109.47039 * 119.99906 * 20 19 18 37 37 H 1.08997 * 109.47801 * 300.00036 * 21 14 12 38 38 H 1.09003 * 109.46782 * 299.99185 * 22 21 14 39 39 H 1.08997 * 109.47115 * 179.97438 * 22 21 14 40 40 H 1.08998 * 109.47497 * 240.00642 * 23 22 21 41 41 H 1.09002 * 109.47595 * 119.99999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5550 3.6171 0.6732 8 14 3.4375 3.4171 3.4339 9 1 4.2392 2.3820 4.1347 10 1 4.1812 4.7025 3.4339 11 1 2.1397 3.5955 4.1332 12 6 2.1388 -1.1672 0.0005 13 8 3.3482 -1.1691 0.0915 14 6 1.3895 -2.4700 -0.1119 15 6 0.5405 -2.4454 -1.3140 16 7 -0.1148 -2.4257 -2.2426 17 6 0.5135 -2.6629 1.1275 18 6 0.9273 -3.9466 1.8498 19 6 0.7507 -5.1405 0.9094 20 6 1.6269 -4.9475 -0.3300 21 6 2.3876 -3.6249 -0.2158 22 6 3.2701 -3.6505 1.0337 23 6 2.3941 -3.8434 2.2731 24 1 -0.3632 -0.0889 -1.0239 25 1 -0.3634 -0.8422 0.5889 26 1 -0.3633 0.9311 0.4348 27 1 3.1499 1.1383 -0.5138 28 1 1.6085 2.0283 -0.5139 29 1 4.0319 4.4430 0.8504 30 1 0.6390 -1.8122 1.7972 31 1 -0.5314 -2.7364 0.8260 32 1 0.3029 -4.0843 2.7325 33 1 1.0460 -6.0550 1.4239 34 1 -0.2942 -5.2140 0.6079 35 1 0.9981 -4.9294 -1.2202 36 1 2.3379 -5.7704 -0.4040 37 1 3.0117 -3.4875 -1.0988 38 1 3.8121 -2.7083 1.1150 39 1 3.9808 -4.4736 0.9598 40 1 2.5198 -2.9929 2.9430 41 1 2.6888 -4.7580 2.7877 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906398564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:43 Heat of formation + Delta-G solvation = -30.432207 kcal Electronic energy + Delta-G solvation = -22841.068134 eV Core-core repulsion = 19719.848815 eV Total energy + Delta-G solvation = -3121.219319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.66123 -39.69338 -37.65962 -36.70111 -34.81013 -32.95040 -32.37622 -31.60923 -29.64406 -27.66615 -25.66104 -24.45328 -23.42365 -23.08866 -21.14816 -19.41034 -18.67121 -18.26630 -17.54598 -17.33292 -16.63918 -16.26821 -16.10354 -15.55707 -15.27441 -14.81848 -14.43610 -14.26951 -13.99958 -13.85402 -13.70331 -13.55361 -13.29330 -13.08659 -12.99558 -12.98272 -12.85101 -12.82979 -12.69000 -12.58008 -12.41886 -12.14994 -11.74906 -11.58403 -11.29650 -10.84285 -10.80636 -10.62597 -10.22609 -9.50734 -8.20911 -6.35559 1.29430 1.39918 1.43872 1.49441 1.51057 1.69050 2.21680 2.42529 2.65840 3.09426 3.34693 3.53218 3.57186 3.93426 4.09091 4.13805 4.22324 4.31677 4.32427 4.46781 4.52847 4.59706 4.61236 4.67876 4.77380 4.87859 4.90707 4.98426 5.01478 5.18201 5.23401 5.31622 5.40873 5.46637 5.48194 5.51258 5.53740 5.68614 5.80119 6.04400 6.27358 6.58239 6.73290 7.21306 7.37706 8.86575 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.006018 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.474694 B = 4651.972972 C = 5170.304674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.260 3.740 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.007 3.993 7 N -0.931 5.931 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.260 1.260 12 C 0.512 3.488 13 O -0.554 6.554 14 C 0.036 3.964 15 C 0.237 3.763 16 N -0.444 5.444 17 C -0.106 4.106 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.056 4.056 22 C -0.127 4.127 23 C -0.114 4.114 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.001 0.999 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -18.314 4.195 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.333 5.333 3 C 0.140 3.860 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.571 5.571 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.184 1.184 12 C 0.298 3.702 13 O -0.432 6.432 14 C 0.029 3.971 15 C -0.080 4.080 16 N -0.120 5.120 17 C -0.145 4.145 18 C -0.097 4.097 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.076 4.076 22 C -0.165 4.165 23 C -0.152 4.152 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.019 0.981 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.195 -18.076 2.768 20.039 hybrid contribution 0.852 1.246 0.491 1.587 sum -7.343 -16.831 3.260 18.650 Atomic orbital electron populations 1.22207 0.78860 1.05190 1.01525 1.48125 1.07826 1.06553 1.70752 1.18831 0.90894 0.79715 0.96602 1.21626 1.36732 1.06560 0.92696 0.92114 1.25865 0.94916 0.96419 1.01941 1.70053 1.38943 1.14854 1.33221 0.85463 0.78865 0.77334 0.79160 1.19901 1.20749 1.18440 1.20430 0.87611 0.85022 0.77148 1.90603 1.15313 1.86652 1.50655 1.18620 0.94094 0.94875 0.89539 1.28646 0.93222 0.92391 0.93787 1.81219 1.10888 1.09104 1.10766 1.21933 0.98863 1.00880 0.92789 1.21107 0.96778 0.92879 0.98924 1.21587 0.99922 0.98246 0.94893 1.21628 0.99081 0.95438 0.98842 1.20886 0.94506 0.92161 1.00092 1.21789 0.97992 1.03350 0.93351 1.21594 0.94534 1.02309 0.96738 0.93507 0.88273 0.90058 0.98074 0.96163 0.92462 0.90289 0.88053 0.87479 0.89207 0.90874 0.92897 0.89254 0.92037 0.91836 0.90180 0.93383 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.11 8.88 127.77 1.13 3.24 16 2 N -0.60 -25.67 2.84 -851.13 -2.42 -28.09 16 3 C 0.26 13.99 5.10 85.63 0.44 14.43 16 4 C -0.54 -30.19 9.39 25.60 0.24 -29.95 16 5 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 6 C 0.01 0.42 5.46 84.65 0.46 0.89 16 7 N -0.93 -55.99 13.29 21.44 0.28 -55.71 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 12 C 0.51 20.73 5.92 87.66 0.52 21.25 16 13 O -0.55 -26.76 13.12 -3.03 -0.04 -26.80 16 14 C 0.04 1.03 0.27 -54.73 -0.01 1.02 16 15 C 0.24 7.09 9.85 89.43 0.88 7.97 16 16 N -0.44 -14.31 18.41 20.01 0.37 -13.94 16 17 C -0.11 -2.33 3.19 30.59 0.10 -2.23 16 18 C -0.08 -1.31 3.19 -10.79 -0.03 -1.34 16 19 C -0.11 -1.51 5.71 30.59 0.17 -1.33 16 20 C -0.11 -2.04 5.45 30.60 0.17 -1.87 16 21 C -0.06 -1.46 1.90 -10.79 -0.02 -1.48 16 22 C -0.13 -3.31 5.39 30.59 0.16 -3.15 16 23 C -0.11 -2.34 5.71 30.60 0.17 -2.16 16 24 H 0.05 1.49 7.31 -2.39 -0.02 1.47 16 25 H 0.10 2.55 4.09 -2.39 -0.01 2.54 16 26 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 27 H 0.00 0.07 7.50 -2.39 -0.02 0.05 16 28 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.08 1.97 6.74 -2.39 -0.02 1.95 16 31 H 0.10 1.76 7.05 -2.39 -0.02 1.75 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 1.03 7.23 -2.39 -0.02 1.01 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 2.25 5.33 -2.39 -0.01 2.24 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.93 316.53 5.63 -64.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.03 Total: 9.01 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.38 Total: 5.28 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -1.76 Total: -97.74 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.04 Total: -26.80 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -69.93 5.63 -64.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906398564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.862 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds