Wall clock time and date at job start Mon Mar 30 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99988 * 2 1 4 4 H 1.08998 * 109.53438 * 329.90065 * 3 2 1 5 5 C 1.53036 * 109.50644 * 90.00104 * 3 2 1 6 6 N 1.46842 * 109.52027 * 60.75910 * 5 3 2 7 7 C 1.38820 * 111.00163 * 185.83874 * 6 5 3 8 8 C 1.39801 * 119.58951 * 180.02562 * 7 6 5 9 9 C 1.38595 * 119.49032 * 180.23633 * 8 7 6 10 10 C 1.38388 * 118.68100 * 359.51775 * 9 8 7 11 11 C 1.40545 * 119.15010 * 0.46106 * 10 9 8 12 12 C 1.41316 * 119.78444 * 179.76764 * 11 10 9 13 13 H 1.08004 * 120.00208 * 0.02562 * 12 11 10 14 14 C 1.40026 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.30747 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00271 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46845 * 60.00314 * 16 14 12 18 18 H 1.48495 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47236 * 300.00504 * 16 14 12 20 20 N 1.31963 * 119.58471 * 359.97438 * 7 6 5 21 21 C 1.46852 * 111.19933 * 61.74437 * 6 5 3 22 22 C 1.53037 * 109.52164 * 298.25818 * 21 6 5 23 23 C 1.53116 * 109.27954 * 59.17635 * 22 21 6 24 24 H 1.09005 * 109.57452 * 62.28180 * 23 22 21 25 25 C 1.53000 * 109.52128 * 182.44045 * 23 22 21 26 26 H 1.09001 * 109.47316 * 59.99800 * 1 2 3 27 27 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46869 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.46263 * 300.74600 * 5 3 2 30 30 H 1.08997 * 109.46229 * 180.77869 * 5 3 2 31 31 H 1.08002 * 120.24974 * 359.95173 * 8 7 6 32 32 H 1.08002 * 120.65709 * 179.74887 * 9 8 7 33 33 H 1.08006 * 120.42392 * 180.20056 * 10 9 8 34 34 H 0.97003 * 120.00376 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.45938 * 58.27257 * 21 6 5 36 36 H 1.09002 * 109.46271 * 178.23836 * 21 6 5 37 37 H 1.08999 * 109.50293 * 299.23144 * 22 21 6 38 38 H 1.09001 * 109.49885 * 179.11844 * 22 21 6 39 39 H 1.09003 * 109.47145 * 179.68383 * 25 23 22 40 40 H 1.09003 * 109.47157 * 299.67889 * 25 23 22 41 41 H 1.08992 * 109.47456 * 59.68516 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3466 1.9999 -0.5152 5 6 2.2182 1.7722 1.4425 6 7 3.1289 0.8485 2.1307 7 6 3.2368 1.1675 3.4775 8 6 4.0622 0.4000 4.3046 9 6 4.1647 0.7173 5.6499 10 6 3.4488 1.7983 6.1337 11 6 2.6364 2.5314 5.2518 12 6 1.8958 3.6348 5.7326 13 1 1.9555 3.9125 6.7746 14 6 1.0845 4.3680 4.8581 15 7 1.0117 4.0316 3.5967 16 14 0.1050 5.8261 5.4937 17 1 1.0339 6.8393 6.0558 18 1 -0.6669 6.4284 4.3773 19 1 -0.8301 5.3701 6.5534 20 7 2.5598 2.1919 3.9607 21 6 4.4489 0.8267 1.4877 22 6 4.3076 0.3318 0.0465 23 6 3.3623 1.2630 -0.7175 24 1 3.7875 2.2661 -0.7529 25 6 3.1691 0.7390 -2.1419 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.2592 1.7898 1.9603 30 1 2.6487 2.7736 1.4417 31 1 4.6122 -0.4364 3.8993 32 1 4.7936 0.1347 6.3067 33 1 3.5105 2.0725 7.1766 34 1 0.4500 4.5398 2.9908 35 1 4.8690 1.8325 1.4868 36 1 5.1102 0.1577 2.0384 37 1 3.9005 -0.6793 0.0473 38 1 5.2854 0.3306 -0.4353 39 1 2.4917 1.3994 -2.6832 40 1 4.1321 0.7092 -2.6518 41 1 2.7460 -0.2648 -2.1055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116720001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:49 Heat of formation + Delta-G solvation = -6.229992 kcal Electronic energy + Delta-G solvation = -22413.258578 eV Core-core repulsion = 19293.088746 eV Total energy + Delta-G solvation = -3120.169832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.61933 -37.98220 -35.99822 -34.06766 -33.21901 -30.61619 -29.64936 -29.45253 -27.15115 -26.20111 -25.24792 -22.72392 -22.36701 -20.99102 -20.32034 -19.13327 -17.51158 -16.41177 -15.54817 -15.22411 -15.03649 -14.78064 -14.36166 -14.16066 -13.85589 -13.61610 -13.17009 -13.02367 -12.85779 -12.45986 -12.01968 -11.87645 -11.67168 -11.52855 -11.41887 -11.16144 -11.05212 -10.84395 -10.69124 -10.50787 -10.45535 -10.28739 -10.01088 -9.79609 -9.42439 -9.00261 -8.59042 -7.98243 -7.56894 -6.85435 -6.40816 -4.50926 2.77162 3.05114 3.06284 3.09224 3.23437 3.93738 4.15401 4.58509 4.81769 5.02613 5.09696 5.17313 5.53930 5.56179 5.70404 5.78456 5.79466 5.83220 5.90016 5.92323 5.98516 6.06911 6.13561 6.19920 6.21586 6.26932 6.41143 6.53145 6.63925 6.69940 6.75462 6.83277 6.88282 7.13101 7.16503 7.50301 7.63993 7.77459 7.84221 7.91275 8.22473 8.42327 8.72079 9.02109 10.11525 10.31311 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.006503 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.712068 B = 4304.634418 C = 5322.135942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.367 6.367 3 C 0.092 3.908 4 H 0.057 0.943 5 C 0.062 3.938 6 N -0.467 5.467 7 C 0.323 3.677 8 C -0.321 4.321 9 C -0.045 4.045 10 C -0.298 4.298 11 C 0.276 3.724 12 C -0.433 4.433 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.719 5.719 16 Si 0.905 3.095 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.265 1.265 20 N -0.510 5.510 21 C 0.065 3.935 22 C -0.105 4.105 23 C -0.091 4.091 24 H 0.075 0.925 25 C -0.140 4.140 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -2.948 -9.211 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.285 6.285 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.066 4.066 6 N -0.185 5.185 7 C 0.085 3.915 8 C -0.345 4.345 9 C -0.069 4.069 10 C -0.321 4.321 11 C 0.150 3.850 12 C -0.465 4.465 13 H 0.100 0.900 14 C -0.152 4.152 15 N -0.341 5.341 16 Si 0.730 3.270 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.190 1.190 20 N -0.228 5.228 21 C -0.062 4.062 22 C -0.143 4.143 23 C -0.110 4.110 24 H 0.093 0.907 25 C -0.198 4.198 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.410 -3.031 -10.037 10.492 hybrid contribution 0.119 1.105 1.016 1.506 sum 0.529 -1.925 -9.020 9.239 Atomic orbital electron populations 1.22689 0.82225 1.01892 0.99521 1.87910 1.18411 1.27290 1.94937 1.22377 0.93770 0.84653 0.95858 0.92466 1.22250 0.99109 0.93354 0.91860 1.58948 1.09965 1.49210 1.00375 1.19884 0.91854 0.90521 0.89217 1.20708 1.12312 1.06829 0.94697 1.20698 0.96450 0.95476 0.94319 1.21623 1.08372 1.02490 0.99578 1.18317 0.88928 0.91178 0.86596 1.19531 1.21292 1.09450 0.96240 0.90017 1.26015 0.96350 0.98183 0.94620 1.70116 1.27422 1.33136 1.03391 0.86429 0.79994 0.81251 0.79343 1.19053 1.20341 1.19003 1.68659 1.25081 1.14042 1.15008 1.22080 0.89836 0.99746 0.94498 1.21571 0.98244 1.00427 0.94036 1.21306 0.95069 0.99684 0.94899 0.90686 1.21732 1.00884 1.01787 0.95364 0.95063 0.90396 0.93902 0.88609 0.92884 0.88700 0.88674 0.88581 0.91934 0.95039 0.90498 0.90401 0.92043 0.93365 0.93131 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.82 101.05 1.09 1.57 16 2 O -0.37 -6.19 8.92 -35.23 -0.31 -6.50 16 3 C 0.09 1.51 2.41 -26.65 -0.06 1.45 16 4 H 0.06 0.88 7.79 -51.93 -0.40 0.47 16 5 C 0.06 1.28 4.30 -3.84 -0.02 1.26 16 6 N -0.47 -10.01 4.56 -173.20 -0.79 -10.80 16 7 C 0.32 8.03 6.41 -155.32 -1.00 7.03 16 8 C -0.32 -7.56 9.20 -38.87 -0.36 -7.91 16 9 C -0.04 -1.04 10.15 -39.39 -0.40 -1.44 16 10 C -0.30 -7.51 9.83 -38.66 -0.38 -7.89 16 11 C 0.28 7.62 6.55 -85.00 -0.56 7.06 16 12 C -0.43 -11.57 9.14 -37.74 -0.34 -11.92 16 13 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 14 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 15 N -0.72 -18.35 11.46 55.55 0.64 -17.71 16 16 Si 0.91 18.46 29.56 -169.99 -5.02 13.43 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 N -0.51 -13.85 6.16 -10.33 -0.06 -13.91 16 21 C 0.07 1.18 5.24 -3.83 -0.02 1.16 16 22 C -0.10 -1.55 5.22 -26.65 -0.14 -1.69 16 23 C -0.09 -1.30 2.62 -90.50 -0.24 -1.54 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.14 -1.67 9.03 37.16 0.34 -1.33 16 26 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 29 H 0.10 2.27 7.42 -51.93 -0.39 1.88 16 30 H 0.05 1.19 8.11 -51.93 -0.42 0.77 16 31 H 0.09 2.04 7.13 -52.49 -0.37 1.66 16 32 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 33 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.36 6.65 -51.93 -0.35 1.01 16 37 H 0.08 1.23 7.80 -51.93 -0.40 0.82 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -28.79 327.97 -9.28 -38.07 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.49 Total: 4.94 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.18 Total: -12.46 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.22 Total: -42.43 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.31 Total: -6.50 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.79 -9.28 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116720001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.842 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds