Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99988 * 2 1 4 4 H 1.08998 * 109.53438 * 329.90065 * 3 2 1 5 5 C 1.53036 * 109.50644 * 90.00104 * 3 2 1 6 6 N 1.46842 * 109.52027 * 60.75910 * 5 3 2 7 7 C 1.38820 * 111.00163 * 185.83874 * 6 5 3 8 8 C 1.39801 * 119.58951 * 180.02562 * 7 6 5 9 9 C 1.38595 * 119.49032 * 180.23633 * 8 7 6 10 10 C 1.38388 * 118.68100 * 359.51775 * 9 8 7 11 11 C 1.40545 * 119.15010 * 0.46106 * 10 9 8 12 12 C 1.41316 * 119.78444 * 179.76764 * 11 10 9 13 13 H 1.08004 * 120.00208 * 0.02562 * 12 11 10 14 14 C 1.40026 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.30747 * 120.00125 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00271 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46845 * 60.00314 * 16 14 12 18 18 H 1.48495 * 109.47173 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47236 * 300.00504 * 16 14 12 20 20 N 1.31963 * 119.58471 * 359.97438 * 7 6 5 21 21 C 1.46852 * 111.19933 * 61.74437 * 6 5 3 22 22 C 1.53037 * 109.52164 * 298.25818 * 21 6 5 23 23 C 1.53116 * 109.27954 * 59.17635 * 22 21 6 24 24 H 1.09005 * 109.57452 * 62.28180 * 23 22 21 25 25 C 1.53000 * 109.52128 * 182.44045 * 23 22 21 26 26 H 1.09001 * 109.47316 * 59.99800 * 1 2 3 27 27 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46869 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.46263 * 300.74600 * 5 3 2 30 30 H 1.08997 * 109.46229 * 180.77869 * 5 3 2 31 31 H 1.08002 * 120.24974 * 359.95173 * 8 7 6 32 32 H 1.08002 * 120.65709 * 179.74887 * 9 8 7 33 33 H 1.08006 * 120.42392 * 180.20056 * 10 9 8 34 34 H 0.97003 * 120.00376 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.45938 * 58.27257 * 21 6 5 36 36 H 1.09002 * 109.46271 * 178.23836 * 21 6 5 37 37 H 1.08999 * 109.50293 * 299.23144 * 22 21 6 38 38 H 1.09001 * 109.49885 * 179.11844 * 22 21 6 39 39 H 1.09003 * 109.47145 * 179.68383 * 25 23 22 40 40 H 1.09003 * 109.47157 * 299.67889 * 25 23 22 41 41 H 1.08992 * 109.47456 * 59.68516 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3466 1.9999 -0.5152 5 6 2.2182 1.7722 1.4425 6 7 3.1289 0.8485 2.1307 7 6 3.2368 1.1675 3.4775 8 6 4.0622 0.4000 4.3046 9 6 4.1647 0.7173 5.6499 10 6 3.4488 1.7983 6.1337 11 6 2.6364 2.5314 5.2518 12 6 1.8958 3.6348 5.7326 13 1 1.9555 3.9125 6.7746 14 6 1.0845 4.3680 4.8581 15 7 1.0117 4.0316 3.5967 16 14 0.1050 5.8261 5.4937 17 1 1.0339 6.8393 6.0558 18 1 -0.6669 6.4284 4.3773 19 1 -0.8301 5.3701 6.5534 20 7 2.5598 2.1919 3.9607 21 6 4.4489 0.8267 1.4877 22 6 4.3076 0.3318 0.0465 23 6 3.3623 1.2630 -0.7175 24 1 3.7875 2.2661 -0.7529 25 6 3.1691 0.7390 -2.1419 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.2592 1.7898 1.9603 30 1 2.6487 2.7736 1.4417 31 1 4.6122 -0.4364 3.8993 32 1 4.7936 0.1347 6.3067 33 1 3.5105 2.0725 7.1766 34 1 0.4500 4.5398 2.9908 35 1 4.8690 1.8325 1.4868 36 1 5.1102 0.1577 2.0384 37 1 3.9005 -0.6793 0.0473 38 1 5.2854 0.3306 -0.4353 39 1 2.4917 1.3994 -2.6832 40 1 4.1321 0.7092 -2.6518 41 1 2.7460 -0.2648 -2.1055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116720001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -22.474298 kcal Electronic energy + Delta-G solvation = -22413.962984 eV Core-core repulsion = 19293.088746 eV Total energy + Delta-G solvation = -3120.874238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18935 -39.64228 -37.49200 -35.65244 -34.88970 -32.44291 -31.24683 -31.09799 -28.59255 -27.59232 -26.93346 -24.24319 -23.84082 -22.76460 -21.99361 -20.50436 -19.39290 -18.06075 -17.00106 -16.72082 -16.51940 -16.46493 -16.11334 -15.66851 -15.47717 -15.06466 -14.66927 -14.40971 -14.22516 -13.86893 -13.75284 -13.47388 -13.13799 -12.86616 -12.78838 -12.72797 -12.59161 -12.54960 -12.30251 -12.13335 -11.81596 -11.64900 -11.53828 -11.24464 -11.10746 -10.52121 -10.26668 -9.90204 -9.49456 -8.70558 -8.28857 -6.50704 0.90115 1.19100 1.38704 1.49792 1.53569 2.21517 2.76296 2.87417 3.14326 3.78264 3.83587 3.90628 4.03066 4.12657 4.32381 4.41007 4.50460 4.52147 4.58694 4.61715 4.68896 4.79732 4.80566 4.84776 4.90140 4.91061 4.93532 5.02234 5.07824 5.15459 5.20384 5.27255 5.35250 5.38998 5.56291 5.67670 5.88996 5.99798 6.02737 6.29596 6.44804 6.53028 6.79128 7.07053 8.18566 8.44207 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.006503 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.712068 B = 4304.634418 C = 5322.135942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.098 3.902 4 H 0.069 0.931 5 C 0.076 3.924 6 N -0.469 5.469 7 C 0.304 3.696 8 C -0.326 4.326 9 C -0.041 4.041 10 C -0.322 4.322 11 C 0.241 3.759 12 C -0.468 4.468 13 H 0.086 0.914 14 C 0.028 3.972 15 N -0.745 5.745 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.261 1.261 20 N -0.535 5.535 21 C 0.063 3.937 22 C -0.095 4.095 23 C -0.090 4.090 24 H 0.078 0.922 25 C -0.131 4.131 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.025 0.975 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.276 0.724 35 H 0.020 0.980 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -3.291 -10.725 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.040 3.960 4 H 0.087 0.913 5 C -0.052 4.052 6 N -0.188 5.188 7 C 0.066 3.934 8 C -0.351 4.351 9 C -0.065 4.065 10 C -0.345 4.345 11 C 0.114 3.886 12 C -0.499 4.499 13 H 0.104 0.896 14 C -0.194 4.194 15 N -0.367 5.367 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.186 1.186 20 N -0.254 5.254 21 C -0.063 4.063 22 C -0.133 4.133 23 C -0.109 4.109 24 H 0.096 0.904 25 C -0.188 4.188 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.802 -3.399 -11.564 12.080 hybrid contribution 0.028 1.123 1.483 1.861 sum 0.830 -2.276 -10.081 10.368 Atomic orbital electron populations 1.22827 0.81049 1.03171 0.99541 1.87887 1.19797 1.27239 1.94810 1.22324 0.95685 0.84905 0.93120 0.91272 1.22037 0.96722 0.92211 0.94206 1.59059 1.11778 1.48650 0.99282 1.20433 0.91667 0.90274 0.91027 1.21032 1.11986 1.07111 0.94932 1.21092 0.95871 0.94818 0.94765 1.21809 1.09182 1.03535 0.99959 1.18831 0.90042 0.92262 0.87454 1.19883 1.22696 1.10428 0.96943 0.89636 1.26901 0.96997 1.00871 0.94649 1.70225 1.27776 1.34208 1.04484 0.85242 0.78249 0.77200 0.78848 1.18519 1.19212 1.18588 1.68655 1.26256 1.15334 1.15165 1.22228 0.88027 0.99408 0.96614 1.21547 1.00149 0.99792 0.91783 1.21339 0.93261 1.00028 0.96256 0.90390 1.21651 1.02316 1.01414 0.93442 0.92576 0.88550 0.96288 0.92545 0.95647 0.86449 0.84942 0.87610 0.91371 0.96187 0.90028 0.90977 0.88748 0.92403 0.91054 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.82 113.37 1.23 2.07 16 2 O -0.38 -12.40 8.92 -148.98 -1.33 -13.73 16 3 C 0.10 3.18 2.41 30.65 0.07 3.26 16 4 H 0.07 2.06 7.79 -2.39 -0.02 2.05 16 5 C 0.08 3.26 4.30 86.33 0.37 3.63 16 6 N -0.47 -20.50 4.56 -701.88 -3.20 -23.70 16 7 C 0.30 15.51 6.41 133.42 0.86 16.37 16 8 C -0.33 -15.32 9.20 22.73 0.21 -15.11 16 9 C -0.04 -1.90 10.15 22.39 0.23 -1.67 16 10 C -0.32 -16.60 9.83 22.87 0.22 -16.37 16 11 C 0.24 13.80 6.55 40.18 0.26 14.07 16 12 C -0.47 -25.95 9.14 23.46 0.21 -25.73 16 13 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 14 C 0.03 1.44 5.50 85.29 0.47 1.91 16 15 N -0.75 -39.58 11.46 21.84 0.25 -39.33 16 16 Si 0.98 38.47 29.56 68.60 2.03 40.49 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 20 N -0.54 -30.38 6.16 -186.59 -1.15 -31.53 16 21 C 0.06 2.25 5.24 86.32 0.45 2.71 16 22 C -0.10 -2.60 5.22 30.65 0.16 -2.44 16 23 C -0.09 -2.40 2.62 -10.72 -0.03 -2.43 16 24 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 25 C -0.13 -2.67 9.03 71.98 0.65 -2.02 16 26 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.02 0.60 7.86 -2.39 -0.02 0.58 16 29 H 0.06 2.83 7.42 -2.39 -0.02 2.81 16 30 H 0.03 1.20 8.11 -2.39 -0.02 1.18 16 31 H 0.12 4.88 7.13 -2.91 -0.02 4.86 16 32 H 0.13 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.28 13.30 8.29 -92.71 -0.77 12.53 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 2.78 6.65 -2.39 -0.02 2.77 16 37 H 0.07 2.10 7.80 -2.39 -0.02 2.08 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.27 7.63 -2.39 -0.02 1.25 16 Total: -1.00 -65.17 327.97 2.97 -62.20 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.00 Total: 27.35 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 5.37 Total: -21.76 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -4.10 Total: -94.56 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.33 Total: -13.73 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.49 kcal Total: -65.17 2.97 -62.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116720001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.727 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds