Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40444 * 120.05248 * 278.44897 * 3 2 1 5 5 C 1.35447 * 120.48877 * 180.02562 * 4 3 2 6 6 C 1.42205 * 120.70606 * 359.95722 * 5 4 3 7 7 C 1.39503 * 128.31393 * 179.72713 * 6 5 4 8 8 C 1.37140 * 115.08489 * 179.80896 * 7 6 5 9 9 C 1.39794 * 124.83726 * 180.20210 * 8 7 6 10 10 H 1.07994 * 119.99419 * 0.26682 * 9 8 7 11 11 C 1.40310 * 119.99784 * 180.26393 * 9 8 7 12 12 N 1.30668 * 120.00222 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99502 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46922 * 90.00253 * 13 11 9 15 15 H 1.48501 * 109.46879 * 209.99714 * 13 11 9 16 16 H 1.48502 * 109.47441 * 330.00028 * 13 11 9 17 17 S 1.75453 * 110.32577 * 0.45586 * 8 7 6 18 18 C 1.40553 * 118.81761 * 0.02562 * 6 5 4 19 19 C 1.39224 * 119.92588 * 0.02902 * 18 6 5 20 20 C 1.50698 * 119.91763 * 179.97438 * 19 18 6 21 21 Cl 1.80291 * 109.47019 * 269.97510 * 20 19 18 22 22 H 1.08002 * 119.75279 * 0.02935 * 4 3 2 23 23 H 1.08003 * 119.65127 * 179.97438 * 5 4 3 24 24 H 1.07998 * 122.45768 * 359.97438 * 7 6 5 25 25 H 0.97004 * 120.00267 * 179.97438 * 12 11 9 26 26 H 1.09005 * 109.47247 * 29.97777 * 20 19 18 27 27 H 1.08998 * 109.46965 * 149.97634 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.1777 1.2024 5 6 4.6258 -0.1781 1.2127 6 6 5.3612 0.0008 0.0088 7 6 6.7453 0.0326 -0.1627 8 6 7.1670 0.2184 -1.4543 9 6 8.5044 0.2787 -1.8568 10 1 9.2932 0.1713 -1.1271 11 6 8.8217 0.4786 -3.2089 12 7 7.8672 0.6079 -4.0918 13 14 10.6088 0.5599 -3.7466 14 1 11.0838 -0.8037 -4.0936 15 1 10.7286 1.4429 -4.9345 16 1 11.4347 1.1049 -2.6392 17 16 5.7889 0.3769 -2.5286 18 6 4.6575 0.1789 -1.1948 19 6 3.2652 0.1784 -1.1920 20 6 2.5109 0.3700 -2.4825 21 17 2.2095 2.1277 -2.7471 22 1 2.7283 -0.3155 2.1257 23 1 5.1530 -0.3159 2.1452 24 1 7.4341 -0.0835 0.6609 25 1 8.0866 0.7465 -5.0265 26 1 3.0997 -0.0263 -3.3098 27 1 1.5588 -0.1578 -2.4285 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = 23.519968 kcal Electronic energy + Delta-G solvation = -15742.955744 eV Core-core repulsion = 13002.320057 eV Total energy + Delta-G solvation = -2740.635687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 277.002 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.82436 -36.20212 -35.59970 -35.10507 -33.42032 -31.71689 -29.50487 -26.58020 -25.87240 -22.98856 -21.17551 -19.71866 -18.16095 -17.92895 -15.90540 -15.31193 -14.88002 -14.50221 -14.25839 -13.45534 -13.23091 -13.05158 -13.01849 -12.86742 -12.34157 -12.27124 -11.98603 -11.71174 -11.66537 -11.44524 -10.93254 -10.68228 -10.50556 -10.38120 -10.04873 -9.93389 -9.55724 -9.27319 -8.67939 -7.65812 -7.47949 -6.66264 -4.96754 1.25816 2.02072 2.50357 2.69672 2.76645 2.85814 2.93911 3.14794 3.28873 3.37008 3.58097 3.79929 4.45192 4.66797 4.85041 5.02473 5.16870 5.57264 5.70350 6.04833 6.27425 6.36656 6.50647 6.69403 6.84892 7.03199 7.09181 7.20006 7.45176 7.58669 7.72584 7.99059 8.08282 8.13301 9.33640 Molecular weight = 277.00amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.005801 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.984932 B = 4825.663199 C = 5693.319323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.279 3.721 3 C -0.123 4.123 4 C -0.058 4.058 5 C -0.152 4.152 6 C 0.045 3.955 7 C -0.357 4.357 8 C 0.053 3.947 9 C -0.359 4.359 10 H 0.105 0.895 11 C 0.050 3.950 12 N -0.758 5.758 13 Si 0.942 3.058 14 H -0.260 1.260 15 H -0.268 1.268 16 H -0.254 1.254 17 S 0.157 5.843 18 C -0.260 4.260 19 C 0.020 3.980 20 C 0.006 3.994 21 Cl -0.176 7.176 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.307 0.693 26 H 0.103 0.897 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -0.824 -0.634 1.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.033 4.033 3 C -0.129 4.129 4 C -0.080 4.080 5 C -0.172 4.172 6 C 0.036 3.964 7 C -0.381 4.381 8 C -0.067 4.067 9 C -0.392 4.392 10 H 0.123 0.877 11 C -0.174 4.174 12 N -0.383 5.383 13 Si 0.764 3.236 14 H -0.185 1.185 15 H -0.193 1.193 16 H -0.177 1.177 17 S 0.417 5.583 18 C -0.375 4.375 19 C 0.012 3.988 20 C -0.057 4.057 21 Cl -0.149 7.149 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.464 -0.427 -2.428 2.509 hybrid contribution 1.305 -0.112 1.333 1.868 sum 0.841 -0.539 -1.095 1.482 Atomic orbital electron populations 1.81132 1.12273 1.12939 1.08517 1.25838 0.92742 0.92028 0.92694 1.15223 0.83181 1.19989 0.94541 1.20095 0.93913 0.98843 0.95170 1.20424 0.92948 1.07059 0.96742 1.18111 0.93116 0.93367 0.91821 1.19675 0.92663 1.29644 0.96101 1.21598 0.96666 0.93804 0.94632 1.19548 0.92147 1.34073 0.93471 0.87703 1.26460 1.02336 0.92383 0.96254 1.68552 1.35245 1.29371 1.05155 0.85684 0.78686 0.79838 0.79420 1.18495 1.19285 1.17715 1.84944 0.92480 1.76511 1.04342 1.23339 0.96247 1.16002 1.01943 1.18676 0.91168 0.97279 0.91665 1.23204 1.01757 0.82680 0.98044 1.98712 1.96791 1.22247 1.97168 0.86939 0.86927 0.86957 0.87890 0.87819 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.11 18.54 41.84 0.78 -8.34 15 2 C 0.28 5.15 13.76 -22.47 -0.31 4.85 15 3 C -0.12 -2.28 5.74 -106.77 -0.61 -2.89 15 4 C -0.06 -1.01 9.65 -39.75 -0.38 -1.39 15 5 C -0.15 -2.82 10.01 -39.06 -0.39 -3.21 15 6 C 0.04 0.95 5.86 -107.03 -0.63 0.32 15 7 C -0.36 -7.93 10.13 -39.51 -0.40 -8.33 15 8 C 0.05 1.22 6.11 -39.40 -0.24 0.98 15 9 C -0.36 -7.78 9.27 -38.22 -0.35 -8.14 15 10 H 0.11 2.12 7.85 -52.49 -0.41 1.70 15 11 C 0.05 1.00 5.50 -17.27 -0.09 0.90 15 12 N -0.76 -15.70 10.58 55.57 0.59 -15.11 15 13 Si 0.94 14.90 29.56 -169.99 -5.03 9.87 15 14 H -0.26 -4.09 7.11 56.52 0.40 -3.69 15 15 H -0.27 -4.18 7.11 56.52 0.40 -3.78 15 16 H -0.25 -3.99 7.11 56.52 0.40 -3.59 15 17 S 0.16 3.41 19.39 -107.50 -2.08 1.33 15 18 C -0.26 -5.51 6.29 -38.34 -0.24 -5.75 15 19 C 0.02 0.38 5.32 -103.89 -0.55 -0.17 15 20 C 0.01 0.10 6.22 36.00 0.22 0.33 15 21 Cl -0.18 -3.11 29.13 -51.86 -1.51 -4.62 15 22 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 23 H 0.11 1.83 8.06 -52.48 -0.42 1.41 15 24 H 0.11 2.36 8.06 -52.49 -0.42 1.94 15 25 H 0.31 5.65 8.29 -40.82 -0.34 5.31 15 26 H 0.10 1.68 7.56 -51.93 -0.39 1.29 15 27 H 0.09 1.47 7.06 -51.93 -0.37 1.10 15 LS Contribution 277.32 15.07 4.18 4.18 Total: -1.00 -23.63 277.32 -8.63 -32.26 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -1.57 Total: 2.93 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.98 Total: -22.51 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 1.36 Total: -23.45 kcal Atomic # 14 Polarization: 14.90 SS G_CDS: -5.03 Total: 9.87 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -2.08 Total: 1.33 kcal Atomic # 17 Polarization: -3.11 SS G_CDS: -1.51 Total: -4.62 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -23.63 -8.63 -32.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.785 kcal (2) G-P(sol) polarization free energy of solvation -23.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds