Wall clock time and date at job start Mon Mar 30 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29447 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48492 * 109.47100 * 270.00286 * 3 2 1 5 5 H 1.48498 * 109.46844 * 30.00182 * 3 2 1 6 6 H 1.48496 * 109.46860 * 149.99914 * 3 2 1 7 7 C 1.46687 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99734 * 195.17448 * 7 2 1 9 9 C 1.39393 * 119.99954 * 15.45213 * 7 2 1 10 10 C 1.41757 * 120.60878 * 24.20557 * 9 7 2 11 11 C 1.35759 * 119.85939 * 180.02562 * 10 9 7 12 12 N 1.48015 * 119.39704 * 179.97438 * 11 10 9 13 13 O 1.31693 * 119.99994 * 0.02562 * 12 11 10 14 14 O 1.31704 * 120.00030 * 180.02562 * 12 11 10 15 15 C 1.39559 * 121.20935 * 0.02562 * 11 10 9 16 16 F 1.35100 * 119.36217 * 179.97438 * 15 11 10 17 17 C 1.38432 * 121.27011 * 359.97438 * 15 11 10 18 18 C 1.38490 * 120.03726 * 359.66751 * 17 15 11 19 19 O 1.35271 * 120.58306 * 180.30165 * 18 17 15 20 20 C 1.42900 * 116.99649 * 0.32379 * 19 18 17 21 21 F 1.39894 * 109.47358 * 299.99923 * 20 19 18 22 22 F 1.39898 * 109.47134 * 60.00515 * 20 19 18 23 23 H 0.97000 * 119.99671 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.06475 * 359.97438 * 10 9 7 25 25 H 1.08004 * 119.97753 * 179.97438 * 17 15 11 26 26 H 1.09007 * 109.46703 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 2.4760 2.0464 -1.4000 5 1 1.4261 2.6526 0.7001 6 1 3.5261 1.4400 0.7000 7 6 2.0278 -1.2704 -0.0006 8 1 3.0796 -1.2868 0.2443 9 6 1.3686 -2.4556 -0.3227 10 6 0.1964 -2.4358 -1.1197 11 6 -0.4338 -3.5992 -1.4238 12 7 -1.6573 -3.5667 -2.2562 13 8 -2.1247 -2.4163 -2.6950 14 8 -2.2784 -4.6881 -2.5580 15 6 0.0502 -4.8252 -0.9651 16 9 -0.6068 -5.9601 -1.2898 17 6 1.1905 -4.9007 -0.1839 18 6 1.8787 -3.7466 0.1515 19 8 2.9976 -3.8082 0.9092 20 6 3.4256 -5.1050 1.3299 21 9 2.4193 -5.7024 2.0964 22 9 3.6883 -5.8966 0.2067 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1948 -1.4972 -1.4834 25 1 1.5464 -5.8606 0.1601 26 1 4.3314 -5.0120 1.9292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575661237.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:15 Heat of formation + Delta-G solvation = -153.203576 kcal Electronic energy + Delta-G solvation = -21559.648020 eV Core-core repulsion = 17386.030249 eV Total energy + Delta-G solvation = -4173.617771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.039 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.05538 -47.86110 -47.05654 -39.08792 -38.07492 -36.28135 -34.22389 -33.47956 -30.48002 -30.28095 -26.36480 -25.77972 -24.50205 -22.07513 -21.19162 -18.72431 -18.53621 -17.99980 -17.60331 -17.06235 -16.84112 -16.03426 -15.71621 -15.32803 -14.78540 -14.38446 -14.11465 -14.01181 -13.78424 -13.48669 -13.28391 -13.19089 -12.99576 -12.28525 -12.15843 -11.75067 -11.44045 -11.27090 -10.94844 -10.78705 -10.51501 -10.45694 -10.10040 -9.86462 -9.84866 -8.37495 -8.10589 -7.56368 -4.91655 0.29955 2.01307 2.11669 2.19131 2.69492 2.73810 2.77229 3.03772 3.40429 3.73942 3.76067 4.56259 4.58831 4.94119 5.02146 5.31603 5.59827 5.95428 6.13897 6.24384 6.42602 6.60599 6.76907 6.92281 7.27699 7.40676 7.68332 7.76968 7.84695 8.09593 9.30235 Molecular weight = 277.04amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.009730 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.427030 B = 2876.970540 C = 4957.632939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.063 3.937 3 Si 0.934 3.066 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.399 4.399 8 H 0.106 0.894 9 C 0.102 3.898 10 C -0.105 4.105 11 C 0.008 3.992 12 N -0.003 5.003 13 O -0.200 6.200 14 O -0.197 6.197 15 C 0.005 3.995 16 F -0.136 7.136 17 C -0.165 4.165 18 C 0.016 3.984 19 O -0.298 6.298 20 C 0.406 3.594 21 F -0.204 7.204 22 F -0.205 7.205 23 H 0.306 0.694 24 H 0.165 0.835 25 H 0.135 0.865 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 -0.495 4.114 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.423 4.423 8 H 0.124 0.876 9 C 0.097 3.903 10 C -0.126 4.126 11 C -0.080 4.080 12 N 0.470 4.530 13 O -0.390 6.390 14 O -0.387 6.387 15 C -0.017 4.017 16 F -0.115 7.115 17 C -0.185 4.185 18 C -0.029 4.029 19 O -0.215 6.215 20 C 0.315 3.685 21 F -0.186 7.186 22 F -0.187 7.187 23 H 0.119 0.881 24 H 0.182 0.818 25 H 0.152 0.848 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.406 -0.279 4.513 9.545 hybrid contribution -0.425 0.007 -0.267 0.502 sum 7.981 -0.273 4.247 9.044 Atomic orbital electron populations 1.68989 1.09079 1.32646 1.24051 1.27771 0.94848 1.02934 0.91207 0.85846 0.80527 0.77648 0.80417 1.18145 1.19321 1.17493 1.20811 0.97722 0.88823 1.34944 0.87564 1.17667 0.91196 0.89241 0.92184 1.20848 0.96749 0.96207 0.98776 1.20022 0.88363 0.96180 1.03455 1.50580 1.02188 1.01971 0.98270 1.96192 1.71034 1.13871 1.57874 1.96220 1.61135 1.17438 1.63948 1.16245 0.96850 0.79721 1.08917 1.91450 1.80220 1.48273 1.91564 1.20698 0.96630 0.98011 1.03157 1.20004 0.89588 0.94093 0.99167 1.86384 1.42033 1.26878 1.66173 1.23334 0.89352 0.76069 0.79765 1.93075 1.65177 1.84608 1.75751 1.93073 1.94114 1.75860 1.55676 0.88098 0.81803 0.84781 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -15.62 10.94 55.99 0.61 -15.01 15 2 C 0.06 1.27 5.36 -15.15 -0.08 1.19 15 3 Si 0.93 14.86 29.67 -169.99 -5.04 9.82 15 4 H -0.26 -4.10 7.11 56.52 0.40 -3.70 15 5 H -0.27 -4.19 7.11 56.52 0.40 -3.79 15 6 H -0.25 -3.92 7.11 56.52 0.40 -3.52 15 7 C -0.40 -8.65 9.06 -35.74 -0.32 -8.98 15 8 H 0.11 2.16 7.81 -52.49 -0.41 1.75 15 9 C 0.10 2.35 5.77 -104.71 -0.60 1.75 15 10 C -0.11 -2.54 8.23 -39.13 -0.32 -2.86 15 11 C 0.01 0.19 6.83 -80.34 -0.55 -0.36 15 12 N 0.00 -0.08 4.98 33.77 0.17 0.09 15 13 O -0.20 -5.05 19.06 -31.56 -0.60 -5.65 15 14 O -0.20 -5.03 17.97 -31.57 -0.57 -5.60 15 15 C 0.00 0.12 7.26 -39.02 -0.28 -0.17 15 16 F -0.14 -3.27 15.26 2.25 0.03 -3.24 15 17 C -0.16 -3.58 8.23 -39.42 -0.32 -3.91 15 18 C 0.02 0.34 6.70 -36.07 -0.24 0.10 15 19 O -0.30 -5.43 9.90 -17.50 -0.17 -5.61 15 20 C 0.41 5.63 5.97 101.05 0.60 6.23 15 21 F -0.20 -3.19 15.58 2.25 0.04 -3.15 15 22 F -0.21 -3.14 15.62 2.25 0.04 -3.10 15 23 H 0.31 5.79 8.27 -40.82 -0.34 5.46 15 24 H 0.16 4.04 5.53 -52.49 -0.29 3.75 15 25 H 0.13 2.68 5.15 -52.48 -0.27 2.41 15 26 H 0.17 1.38 8.14 -51.93 -0.42 0.95 15 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -26.98 258.62 -4.25 -31.24 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -0.53 Total: 3.32 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.13 Total: -7.00 kcal Atomic # 7 Polarization: -15.70 SS G_CDS: 0.78 Total: -14.92 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -1.34 Total: -16.85 kcal Atomic # 9 Polarization: -9.60 SS G_CDS: 0.10 Total: -9.49 kcal Atomic # 14 Polarization: 14.86 SS G_CDS: -5.04 Total: 9.82 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.98 -4.25 -31.24 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575661237.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.967 kcal (2) G-P(sol) polarization free energy of solvation -26.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds