Wall clock time and date at job start Mon Mar 30 2020 07:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99784 * 2 1 4 4 H 1.48498 * 109.47090 * 269.99508 * 3 2 1 5 5 H 1.48499 * 109.47057 * 29.99806 * 3 2 1 6 6 H 1.48497 * 109.47124 * 149.99723 * 3 2 1 7 7 C 1.37877 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99501 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00195 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47087 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99924 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00012 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00018 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47302 * 179.97438 * 14 12 11 16 16 C 1.32570 * 119.99965 * 127.26566 * 15 14 12 17 17 C 1.47811 * 119.99911 * 8.22198 * 16 15 14 18 18 C 1.39555 * 120.12944 * 36.11438 * 17 16 15 19 19 C 1.37963 * 119.90778 * 180.25190 * 18 17 16 20 20 C 1.38336 * 120.16899 * 359.74726 * 19 18 17 21 21 C 1.38544 * 120.25839 * 0.02562 * 20 19 18 22 22 F 1.35094 * 119.95601 * 179.97438 * 21 20 19 23 23 C 1.38223 * 120.08954 * 359.97438 * 21 20 19 24 24 H 0.97001 * 119.99904 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47065 * 59.99695 * 9 7 2 26 26 H 1.09003 * 109.46890 * 300.00338 * 9 7 2 27 27 H 1.08998 * 109.47135 * 59.99785 * 10 9 7 28 28 H 1.09003 * 109.47317 * 299.99814 * 10 9 7 29 29 H 0.97000 * 120.00170 * 0.02562 * 11 10 9 30 30 H 1.08998 * 109.47309 * 59.99816 * 14 12 11 31 31 H 1.09003 * 109.46890 * 300.00000 * 14 12 11 32 32 H 1.07999 * 120.00041 * 307.26889 * 15 14 12 33 33 H 1.08004 * 119.99945 * 188.21922 * 16 15 14 34 34 H 1.08000 * 120.05015 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.92205 * 179.72691 * 19 18 17 36 36 H 1.07994 * 119.87016 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.08772 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1605 -3.8036 0.0003 13 8 5.5541 -4.8539 0.0003 14 6 7.6675 -3.8036 0.0008 15 6 8.1699 -5.2243 0.0006 16 6 9.0466 -5.6172 -0.9129 17 6 9.6687 -4.6252 -1.8150 18 6 9.9843 -3.3503 -1.3433 19 6 10.5600 -2.4263 -2.1907 20 6 10.8300 -2.7621 -3.5052 21 6 10.5239 -4.0272 -3.9796 22 9 10.7897 -4.3485 -5.2646 23 6 9.9469 -4.9613 -3.1399 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.6586 -3.1501 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 5.9716 -1.7963 0.0014 30 1 8.0305 -3.2904 0.8913 31 1 8.0311 -3.2890 -0.8887 32 1 7.8157 -5.9224 0.7446 33 1 9.3063 -6.6621 -0.9979 34 1 9.7740 -3.0858 -0.3175 35 1 10.8003 -1.4382 -1.8270 36 1 11.2804 -2.0349 -4.1645 37 1 9.7079 -5.9474 -3.5098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342625607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:39 Heat of formation + Delta-G solvation = -49.101805 kcal Electronic energy + Delta-G solvation = -19906.451342 eV Core-core repulsion = 16563.243481 eV Total energy + Delta-G solvation = -3343.207861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.15164 -39.92406 -39.04862 -35.45284 -34.82489 -32.82556 -31.56484 -30.52113 -29.95242 -28.02455 -24.80813 -23.23508 -22.90961 -20.86427 -20.43317 -19.51096 -17.25982 -17.15282 -16.86969 -16.63188 -16.14038 -15.91042 -15.66374 -15.25135 -14.59110 -14.24460 -14.21280 -13.85817 -13.57852 -13.34279 -13.12986 -12.73188 -12.61442 -12.15378 -12.08845 -11.71109 -11.51008 -11.21574 -11.09064 -10.41649 -10.29398 -10.17878 -9.98547 -9.54797 -9.32238 -9.10388 -8.66432 -8.55822 -8.53339 -6.12825 -4.13121 0.58195 0.86707 2.04186 2.90170 3.23551 3.30889 3.31961 3.32270 3.65336 3.93339 4.35187 4.35796 4.48218 4.67737 4.69749 4.78051 4.98562 5.02896 5.19986 5.21959 5.27634 5.47396 5.55150 5.74683 5.77678 5.93391 6.02803 6.08714 6.18293 6.31555 6.44795 6.53606 6.58502 6.72740 7.11118 7.20740 7.64706 7.86950 8.41480 8.54173 8.91558 9.47149 11.00254 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.003289 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.453360 B = 8511.745153 C = 9244.280112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.727 5.727 12 C 0.508 3.492 13 O -0.546 6.546 14 C -0.136 4.136 15 C -0.092 4.092 16 C -0.141 4.141 17 C -0.020 4.020 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.158 4.158 21 C 0.099 3.901 22 F -0.141 7.141 23 C -0.147 4.147 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.396 0.604 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.425 -5.586 -2.843 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.007 3.993 11 N -0.377 5.377 12 C 0.294 3.706 13 O -0.424 6.424 14 C -0.175 4.175 15 C -0.111 4.111 16 C -0.159 4.159 17 C -0.020 4.020 18 C -0.149 4.149 19 C -0.107 4.107 20 C -0.177 4.177 21 C 0.080 3.920 22 F -0.119 7.119 23 C -0.166 4.166 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.229 0.771 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 24.797 -6.232 -2.895 25.732 hybrid contribution 0.531 1.282 -0.337 1.428 sum 25.328 -4.950 -3.232 26.009 Atomic orbital electron populations 1.69904 1.06304 1.27074 1.50373 1.25008 0.94769 0.99164 0.94358 0.86746 0.80244 0.83534 0.78514 1.20212 1.21246 1.19090 1.20923 0.88673 0.94904 1.51706 0.90635 1.19791 0.98011 0.91343 0.96800 1.21509 0.76055 1.00119 1.01600 1.46331 1.09196 1.07867 1.74313 1.20435 0.89327 0.84198 0.76667 1.90691 1.70445 1.31346 1.49868 1.21346 0.93636 0.97370 1.05170 1.22960 0.94633 0.96188 0.97270 1.21569 1.00159 0.98120 0.96064 1.18940 0.96607 0.93850 0.92626 1.21578 0.99573 0.92818 1.00903 1.20984 0.97291 0.99866 0.92582 1.21211 1.03685 0.95448 0.97373 1.17640 1.00694 0.94529 0.79105 1.91505 1.91871 1.93235 1.35330 1.21268 1.01582 1.00231 0.93491 0.92528 0.95998 0.96460 0.92022 0.91935 0.77085 0.87752 0.87242 0.85451 0.85370 0.84531 0.84694 0.84793 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 10 C 0.13 2.62 5.61 -4.05 -0.02 2.59 16 11 N -0.73 -11.49 5.56 -60.30 -0.33 -11.83 16 12 C 0.51 7.85 7.82 -10.98 -0.09 7.77 16 13 O -0.55 -10.72 16.03 5.56 0.09 -10.63 16 14 C -0.14 -1.40 4.41 -29.04 -0.13 -1.53 16 15 C -0.09 -0.94 8.70 -36.22 -0.32 -1.26 16 16 C -0.14 -1.30 9.80 -37.57 -0.37 -1.67 16 17 C -0.02 -0.19 5.21 -105.03 -0.55 -0.74 16 18 C -0.13 -1.05 7.30 -39.19 -0.29 -1.34 16 19 C -0.09 -0.66 10.03 -39.65 -0.40 -1.06 16 20 C -0.16 -1.35 10.02 -39.43 -0.40 -1.74 16 21 C 0.10 1.00 7.29 -39.47 -0.29 0.71 16 22 F -0.14 -1.54 17.26 2.25 0.04 -1.50 16 23 C -0.15 -1.43 9.76 -39.12 -0.38 -1.82 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 26 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.40 5.05 8.47 -40.82 -0.35 4.71 16 30 H 0.10 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.11 1.04 4.73 -51.93 -0.25 0.79 16 32 H 0.13 1.31 8.05 -52.49 -0.42 0.89 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.14 0.86 6.13 -52.49 -0.32 0.54 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -33.17 321.19 -7.66 -40.83 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.64 Total: 2.38 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.76 Total: -13.77 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.44 Total: -38.34 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.17 -7.66 -40.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342625607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.272 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds