Wall clock time and date at job start Mon Mar 30 2020 07:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 N 1.46505 * 109.46756 * 174.25084 * 3 2 1 5 5 C 1.36934 * 119.99891 * 263.78010 * 4 3 2 6 6 H 1.08002 * 119.99837 * 193.19583 * 5 4 3 7 7 C 1.38812 * 120.00397 * 13.20235 * 5 4 3 8 8 N 1.31621 * 119.99580 * 20.03782 * 7 5 4 9 9 Si 1.86796 * 120.00277 * 200.03475 * 7 5 4 10 10 H 1.48498 * 109.46938 * 59.99919 * 9 7 5 11 11 H 1.48499 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47180 * 300.00129 * 9 7 5 13 13 C 1.46501 * 119.99815 * 83.78250 * 4 3 2 14 14 C 1.53008 * 109.47018 * 95.49959 * 13 4 3 15 15 H 1.09004 * 110.96065 * 54.13344 * 14 13 4 16 16 C 1.54134 * 111.09737 * 178.30999 * 14 13 4 17 17 C 1.50873 * 110.50422 * 146.25484 * 16 14 13 18 18 C 1.39599 * 126.83332 * 159.83036 * 17 16 14 19 19 C 1.37698 * 121.06227 * 179.28835 * 18 17 16 20 20 C 1.38320 * 120.53754 * 0.03053 * 19 18 17 21 21 C 1.38029 * 119.29580 * 0.13156 * 20 19 18 22 22 C 1.38818 * 120.15923 * 359.94928 * 21 20 19 23 23 S 1.77437 * 130.57008 * 179.83623 * 22 21 20 24 24 H 1.09001 * 109.47609 * 300.00056 * 1 2 3 25 25 H 1.08996 * 109.47082 * 60.00006 * 1 2 3 26 26 H 1.09002 * 109.47364 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46814 * 120.00074 * 2 1 3 28 28 H 1.09001 * 109.47087 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47365 * 294.24827 * 3 2 1 30 30 H 1.09003 * 109.47278 * 54.25526 * 3 2 1 31 31 H 0.97002 * 119.99617 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47194 * 215.49668 * 13 4 3 33 33 H 1.08997 * 109.46867 * 335.50120 * 13 4 3 34 34 H 1.09004 * 109.27807 * 266.53497 * 16 14 13 35 35 H 1.09004 * 109.28172 * 25.97787 * 16 14 13 36 36 H 1.08011 * 119.46978 * 359.30990 * 18 17 16 37 37 H 1.08000 * 119.73081 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.35518 * 180.10266 * 20 19 18 39 39 H 1.07995 * 119.91974 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4984 1.4447 0.1384 5 6 4.0689 1.6136 1.3717 6 1 5.1242 1.8283 1.4538 7 6 3.2910 1.5086 2.5166 8 7 2.1371 0.8770 2.4724 9 14 3.8817 2.2636 4.1198 10 1 4.0615 3.7268 3.9411 11 1 2.8769 2.0141 5.1843 12 1 5.1767 1.6496 4.5085 13 6 4.3465 1.2664 -1.0428 14 6 4.7715 2.6358 -1.5770 15 1 5.2407 3.2314 -0.7938 16 6 5.7014 2.4910 -2.7976 17 6 5.4725 3.6190 -3.7731 18 6 6.3492 4.0561 -4.7677 19 6 6.0110 5.0943 -5.6067 20 6 4.7891 5.7302 -5.4808 21 6 3.9095 5.3152 -4.5014 22 6 4.2512 4.2696 -3.6546 23 16 3.3507 3.5242 -2.3199 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.7631 1.9258 -0.9370 30 1 1.5950 1.9852 0.8341 31 1 1.5933 0.8039 3.2724 32 1 5.2319 0.6918 -0.7710 33 1 3.7894 0.7330 -1.8129 34 1 6.7389 2.5088 -2.4638 35 1 5.5003 1.5409 -3.2927 36 1 7.3080 3.5720 -4.8812 37 1 6.7055 5.4148 -6.3692 38 1 4.5262 6.5431 -6.1416 39 1 2.9529 5.8048 -4.3939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092260743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:00 Heat of formation + Delta-G solvation = 44.152974 kcal Electronic energy + Delta-G solvation = -19211.984293 eV Core-core repulsion = 16439.033439 eV Total energy + Delta-G solvation = -2772.950854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.18370 -36.60555 -34.50525 -31.89814 -31.50052 -30.75787 -29.17209 -25.73714 -25.44132 -23.26832 -22.43903 -21.18102 -20.70123 -19.67010 -17.49138 -16.62152 -15.69167 -15.36105 -15.04921 -14.67769 -14.23256 -13.76811 -13.56425 -13.35682 -13.01093 -12.79698 -12.57523 -12.31667 -11.80022 -11.73788 -11.58290 -11.25626 -10.96959 -10.81238 -10.70206 -10.60001 -10.43347 -10.04320 -10.01650 -9.72867 -9.66165 -9.28377 -9.10657 -8.71894 -8.35339 -7.06031 -6.78182 -5.72685 -3.12385 1.27974 1.38851 2.04578 2.82889 3.39154 3.46084 3.47916 3.72504 4.45061 4.62727 4.90312 4.98986 5.07732 5.24408 5.39444 5.42926 5.54338 5.66325 5.71579 5.90102 5.95320 6.02494 6.12198 6.28532 6.31595 6.39514 6.41266 6.43628 6.51348 6.60148 6.65810 6.84114 6.94870 7.01266 7.25859 7.34831 7.67133 7.84039 8.15669 8.38134 9.25652 9.85613 10.31378 11.28539 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.004996 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.503857 B = 5603.171287 C = 6180.257107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.176 3.824 4 N -0.593 5.593 5 C -0.255 4.255 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.167 3.833 14 C -0.064 4.064 15 H 0.102 0.898 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.096 4.096 22 C -0.084 4.084 23 S -0.124 6.124 24 H 0.053 0.947 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.099 0.901 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.084 0.916 31 H 0.252 0.748 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 4.804 -13.428 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.051 3.949 4 N -0.312 5.312 5 C -0.384 4.384 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.539 5.539 9 Si 0.728 3.272 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.037 3.963 14 C -0.196 4.196 15 H 0.120 0.880 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.129 4.129 21 C -0.120 4.120 22 C -0.197 4.197 23 S 0.121 5.879 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.117 0.883 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.429 4.734 -12.763 14.038 hybrid contribution 1.583 0.462 0.441 1.707 sum 5.012 5.196 -12.322 14.282 Atomic orbital electron populations 1.21587 0.98474 0.99078 1.00086 1.22089 0.93109 1.00392 1.00704 1.20817 0.82084 0.94575 0.97440 1.44128 1.01526 1.83419 1.02157 1.19166 0.94289 1.42048 0.82931 0.91213 1.24758 0.97534 0.99810 0.97401 1.70145 1.13846 1.42188 1.27716 0.86427 0.77606 0.79636 0.83482 1.21280 1.21713 1.21209 1.20639 0.95485 0.89733 0.90423 1.25301 0.93234 1.03499 0.97563 0.87965 1.21005 1.01012 0.97022 0.93330 1.21002 0.94736 0.97324 0.98056 1.20792 0.98831 0.97213 0.94942 1.20851 0.97241 0.97225 0.99996 1.21031 0.94111 0.99832 0.97914 1.20415 1.00135 0.95817 0.95631 1.22613 0.97663 0.98674 1.00749 1.86634 1.16695 1.57444 1.27146 0.92819 0.95177 0.95037 0.88292 0.96908 0.97122 0.89813 0.93782 0.92088 0.92851 0.89774 0.89197 0.86400 0.86139 0.85695 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.91 37.16 0.37 -2.30 16 2 C -0.12 -2.80 5.60 -26.73 -0.15 -2.95 16 3 C 0.18 4.18 4.66 -4.04 -0.02 4.16 16 4 N -0.59 -14.06 2.48 -173.23 -0.43 -14.49 16 5 C -0.26 -6.65 9.70 -15.06 -0.15 -6.79 16 6 H 0.07 1.78 7.91 -52.49 -0.41 1.36 16 7 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 8 N -0.89 -24.25 8.39 55.49 0.47 -23.78 16 9 Si 0.90 21.33 29.60 -169.99 -5.03 16.29 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.17 3.26 5.09 -4.04 -0.02 3.24 16 14 C -0.06 -1.13 3.63 -26.13 -0.09 -1.22 16 15 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 16 C -0.08 -1.21 5.86 -27.21 -0.16 -1.37 16 17 C -0.11 -1.54 5.98 -103.79 -0.62 -2.16 16 18 C -0.10 -1.21 9.97 -39.27 -0.39 -1.60 16 19 C -0.13 -1.47 10.00 -39.75 -0.40 -1.87 16 20 C -0.11 -1.25 10.08 -39.63 -0.40 -1.65 16 21 C -0.10 -1.32 10.05 -39.44 -0.40 -1.72 16 22 C -0.08 -1.34 6.48 -39.13 -0.25 -1.60 16 23 S -0.12 -2.27 20.81 -107.50 -2.24 -4.51 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 2.57 6.28 -51.92 -0.33 2.24 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.01 0.25 6.55 -51.93 -0.34 -0.09 16 30 H 0.08 2.25 6.03 -51.93 -0.31 1.93 16 31 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.05 1.01 8.03 -51.93 -0.42 0.60 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -27.70 324.73 -11.11 -38.81 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.00 Total: 0.63 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.77 Total: -17.85 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.04 Total: -38.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.24 Total: -4.51 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.70 -11.11 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.961 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds