Wall clock time and date at job start Mon Mar 30 2020 07:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 N 1.46505 * 109.46756 * 174.25084 * 3 2 1 5 5 C 1.36934 * 119.99891 * 263.78010 * 4 3 2 6 6 H 1.08002 * 119.99837 * 193.19583 * 5 4 3 7 7 C 1.38812 * 120.00397 * 13.20235 * 5 4 3 8 8 N 1.31621 * 119.99580 * 20.03782 * 7 5 4 9 9 Si 1.86796 * 120.00277 * 200.03475 * 7 5 4 10 10 H 1.48498 * 109.46938 * 59.99919 * 9 7 5 11 11 H 1.48499 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47180 * 300.00129 * 9 7 5 13 13 C 1.46501 * 119.99815 * 83.78250 * 4 3 2 14 14 C 1.53008 * 109.47018 * 95.49959 * 13 4 3 15 15 H 1.09004 * 110.96065 * 54.13344 * 14 13 4 16 16 C 1.54134 * 111.09737 * 178.30999 * 14 13 4 17 17 C 1.50873 * 110.50422 * 146.25484 * 16 14 13 18 18 C 1.39599 * 126.83332 * 159.83036 * 17 16 14 19 19 C 1.37698 * 121.06227 * 179.28835 * 18 17 16 20 20 C 1.38320 * 120.53754 * 0.03053 * 19 18 17 21 21 C 1.38029 * 119.29580 * 0.13156 * 20 19 18 22 22 C 1.38818 * 120.15923 * 359.94928 * 21 20 19 23 23 S 1.77437 * 130.57008 * 179.83623 * 22 21 20 24 24 H 1.09001 * 109.47609 * 300.00056 * 1 2 3 25 25 H 1.08996 * 109.47082 * 60.00006 * 1 2 3 26 26 H 1.09002 * 109.47364 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46814 * 120.00074 * 2 1 3 28 28 H 1.09001 * 109.47087 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47365 * 294.24827 * 3 2 1 30 30 H 1.09003 * 109.47278 * 54.25526 * 3 2 1 31 31 H 0.97002 * 119.99617 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47194 * 215.49668 * 13 4 3 33 33 H 1.08997 * 109.46867 * 335.50120 * 13 4 3 34 34 H 1.09004 * 109.27807 * 266.53497 * 16 14 13 35 35 H 1.09004 * 109.28172 * 25.97787 * 16 14 13 36 36 H 1.08011 * 119.46978 * 359.30990 * 18 17 16 37 37 H 1.08000 * 119.73081 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.35518 * 180.10266 * 20 19 18 39 39 H 1.07995 * 119.91974 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4984 1.4447 0.1384 5 6 4.0689 1.6136 1.3717 6 1 5.1242 1.8283 1.4538 7 6 3.2910 1.5086 2.5166 8 7 2.1371 0.8770 2.4724 9 14 3.8817 2.2636 4.1198 10 1 4.0615 3.7268 3.9411 11 1 2.8769 2.0141 5.1843 12 1 5.1767 1.6496 4.5085 13 6 4.3465 1.2664 -1.0428 14 6 4.7715 2.6358 -1.5770 15 1 5.2407 3.2314 -0.7938 16 6 5.7014 2.4910 -2.7976 17 6 5.4725 3.6190 -3.7731 18 6 6.3492 4.0561 -4.7677 19 6 6.0110 5.0943 -5.6067 20 6 4.7891 5.7302 -5.4808 21 6 3.9095 5.3152 -4.5014 22 6 4.2512 4.2696 -3.6546 23 16 3.3507 3.5242 -2.3199 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.7631 1.9258 -0.9370 30 1 1.5950 1.9852 0.8341 31 1 1.5933 0.8039 3.2724 32 1 5.2319 0.6918 -0.7710 33 1 3.7894 0.7330 -1.8129 34 1 6.7389 2.5088 -2.4638 35 1 5.5003 1.5409 -3.2927 36 1 7.3080 3.5720 -4.8812 37 1 6.7055 5.4148 -6.3692 38 1 4.5262 6.5431 -6.1416 39 1 2.9529 5.8048 -4.3939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092260743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:59 Heat of formation + Delta-G solvation = 32.529506 kcal Electronic energy + Delta-G solvation = -19212.488325 eV Core-core repulsion = 16439.033439 eV Total energy + Delta-G solvation = -2773.454885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19901 -38.34477 -35.84870 -33.67247 -33.19701 -31.73421 -30.59620 -27.33953 -27.15047 -24.54246 -23.77730 -22.66259 -21.94383 -21.41930 -18.83680 -18.29313 -17.18104 -16.72271 -16.32143 -15.89399 -15.70804 -15.36121 -15.21801 -14.76501 -14.36780 -14.21223 -13.89026 -13.56422 -13.38982 -13.13965 -13.04435 -12.80724 -12.55102 -12.51700 -12.22331 -12.12479 -11.93079 -11.90112 -11.75185 -11.54364 -11.09943 -10.84344 -10.49731 -10.31466 -9.69852 -8.78307 -8.31776 -7.73557 -5.13473 0.26736 0.40529 0.76692 1.47488 1.51733 1.53422 1.56242 2.54378 2.75199 3.29474 3.42739 3.76475 3.86810 4.06244 4.10142 4.23524 4.41228 4.51453 4.54841 4.57222 4.66107 4.67848 4.74953 4.89856 4.91656 4.93058 5.02513 5.06496 5.14657 5.24843 5.41478 5.45829 5.48197 5.54448 5.56843 5.65471 5.88397 6.02530 6.23903 6.39616 7.25706 7.93839 8.36093 9.25199 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.004996 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.503857 B = 5603.171287 C = 6180.257107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.186 3.814 4 N -0.607 5.607 5 C -0.261 4.261 6 H 0.071 0.929 7 C -0.045 4.045 8 N -0.910 5.910 9 Si 0.953 3.047 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.170 3.830 14 C -0.049 4.049 15 H 0.081 0.919 16 C -0.077 4.077 17 C -0.120 4.120 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.110 4.110 22 C -0.105 4.105 23 S -0.191 6.191 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.018 0.982 30 H 0.049 0.951 31 H 0.244 0.756 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 5.555 -15.921 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.061 3.939 4 N -0.327 5.327 5 C -0.390 4.390 6 H 0.089 0.911 7 C -0.240 4.240 8 N -0.557 5.557 9 Si 0.783 3.217 10 H -0.217 1.217 11 H -0.223 1.223 12 H -0.205 1.205 13 C 0.041 3.959 14 C -0.181 4.181 15 H 0.099 0.901 16 C -0.115 4.115 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.143 4.143 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.217 4.217 23 S 0.052 5.948 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.258 5.493 -15.293 17.079 hybrid contribution 1.088 0.324 1.049 1.546 sum 6.346 5.817 -14.244 16.644 Atomic orbital electron populations 1.21482 0.96392 1.00345 1.00113 1.21907 0.94979 0.99220 0.99335 1.20595 0.82371 0.94832 0.96143 1.44245 1.01885 1.83862 1.02726 1.19406 0.94418 1.41200 0.84006 0.91128 1.25362 0.98132 1.00721 0.99819 1.70310 1.14573 1.43117 1.27661 0.85558 0.77132 0.78467 0.80549 1.21732 1.22313 1.20508 1.20732 0.95117 0.90993 0.89053 1.24932 0.93256 1.01400 0.98492 0.90057 1.20932 1.01031 0.97681 0.91898 1.21143 0.94838 0.97507 0.99040 1.21154 0.99375 0.97436 0.94018 1.21356 0.97398 0.95824 0.99733 1.21448 0.93633 1.00180 0.97097 1.20683 1.01076 0.95532 0.96091 1.22563 0.97966 1.00497 1.00709 1.86680 1.18968 1.59338 1.29789 0.94347 0.93522 0.93123 0.91553 0.96085 0.96439 0.93310 0.94607 0.91326 0.92392 0.87713 0.88192 0.83700 0.82441 0.82403 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.91 71.98 0.71 -4.26 16 2 C -0.11 -5.29 5.60 30.59 0.17 -5.12 16 3 C 0.19 9.10 4.66 86.38 0.40 9.50 16 4 N -0.61 -29.44 2.48 -701.98 -1.74 -31.18 16 5 C -0.26 -13.85 9.70 84.03 0.82 -13.03 16 6 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 7 C -0.04 -2.44 4.96 84.86 0.42 -2.02 16 8 N -0.91 -51.03 8.39 21.65 0.18 -50.85 16 9 Si 0.95 44.86 29.60 68.60 2.03 46.89 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.17 6.64 5.09 86.38 0.44 7.08 16 14 C -0.05 -1.74 3.63 30.98 0.11 -1.63 16 15 H 0.08 3.17 8.14 -2.38 -0.02 3.16 16 16 C -0.08 -2.08 5.86 30.29 0.18 -1.90 16 17 C -0.12 -3.27 5.98 -19.33 -0.12 -3.39 16 18 C -0.10 -2.09 9.97 22.47 0.22 -1.86 16 19 C -0.12 -2.16 10.00 22.16 0.22 -1.94 16 20 C -0.10 -2.00 10.08 22.24 0.22 -1.78 16 21 C -0.11 -2.87 10.05 22.36 0.22 -2.64 16 22 C -0.10 -3.28 6.48 22.56 0.15 -3.13 16 23 S -0.19 -7.16 20.81 -56.49 -1.18 -8.34 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 3.53 6.28 -2.38 -0.01 3.51 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.02 0.83 6.55 -2.39 -0.02 0.81 16 30 H 0.05 2.73 6.03 -2.39 -0.01 2.71 16 31 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16 32 H 0.07 2.56 8.08 -2.39 -0.02 2.54 16 33 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 34 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.10 2.48 7.86 -2.38 -0.02 2.46 16 36 H 0.15 2.20 8.06 -2.90 -0.02 2.18 16 37 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -61.69 324.73 4.49 -57.20 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.01 Total: 12.39 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.18 Total: -26.11 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.56 Total: -82.03 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.18 Total: -8.34 kcal Total: -61.69 4.49 -57.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092260743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.729 kcal (2) G-P(sol) polarization free energy of solvation -61.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds