Wall clock time and date at job start Mon Mar 30 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.68411 * 2 1 4 4 S 1.81749 * 109.57830 * 120.32330 * 2 1 3 5 5 C 1.81748 * 102.22338 * 173.07404 * 4 2 1 6 6 C 1.53093 * 108.83821 * 306.73232 * 5 4 2 7 7 C 1.52577 * 109.95745 * 63.02709 * 6 5 4 8 8 C 1.52582 * 110.72739 * 289.32398 * 7 6 5 9 9 H 1.08999 * 109.39582 * 190.72760 * 8 7 6 10 10 N 1.46504 * 109.38930 * 310.52599 * 8 7 6 11 11 C 1.38855 * 120.00043 * 274.99799 * 10 8 7 12 12 C 1.39566 * 119.84454 * 179.97438 * 11 10 8 13 13 C 1.36345 * 120.16518 * 179.97438 * 12 11 10 14 14 C 1.40884 * 119.83274 * 0.02562 * 13 12 11 15 15 C 1.41136 * 120.15580 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99569 * 334.87569 * 15 14 13 17 17 C 1.39863 * 120.00397 * 154.87475 * 15 14 13 18 18 N 1.30904 * 119.99809 * 334.19642 * 17 15 14 19 19 Si 1.86796 * 120.00302 * 154.19020 * 17 15 14 20 20 H 1.48500 * 109.46962 * 60.00232 * 19 17 15 21 21 H 1.48498 * 109.47019 * 300.00503 * 19 17 15 22 22 H 1.48496 * 109.47226 * 180.02562 * 19 17 15 23 23 C 1.40883 * 119.68981 * 0.24640 * 14 13 12 24 24 C 1.36344 * 119.83727 * 359.46768 * 23 14 13 25 25 H 1.09002 * 109.47046 * 180.32309 * 1 2 3 26 26 H 1.08998 * 109.46839 * 300.31892 * 1 2 3 27 27 H 1.08998 * 109.46679 * 60.32402 * 1 2 3 28 28 H 1.08995 * 109.57441 * 186.92730 * 5 4 2 29 29 H 1.08997 * 109.68441 * 66.60577 * 5 4 2 30 30 H 1.09003 * 109.39165 * 302.87785 * 6 5 4 31 31 H 1.09003 * 109.38776 * 183.17505 * 6 5 4 32 32 H 1.09001 * 109.22836 * 169.00687 * 7 6 5 33 33 H 1.09000 * 109.19520 * 49.62388 * 7 6 5 34 34 H 0.96997 * 119.99912 * 94.99905 * 10 8 7 35 35 H 1.08006 * 119.91866 * 359.97438 * 12 11 10 36 36 H 1.07989 * 120.08133 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99996 * 354.23206 * 18 17 15 38 38 H 1.08001 * 120.08234 * 179.72380 * 23 14 13 39 39 H 1.08000 * 119.91797 * 180.26956 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 16 2.1390 -0.8646 1.4781 5 6 3.9293 -0.9342 1.1729 6 6 4.1722 -1.5573 -0.2043 7 6 3.5672 -0.6725 -1.2902 8 6 2.0430 -0.7282 -1.2451 9 1 1.6368 -0.2490 -2.1359 10 7 1.6084 -2.1267 -1.2043 11 6 1.4680 -2.8449 -2.3843 12 6 1.0543 -4.1772 -2.3416 13 6 0.9138 -4.8883 -3.4963 14 6 1.1879 -4.2752 -4.7348 15 6 1.0452 -5.0051 -5.9343 16 1 1.1290 -6.0818 -5.9244 17 6 0.7952 -4.3342 -7.1358 18 7 0.2066 -3.1651 -7.1223 19 14 1.3014 -5.1063 -8.7596 20 1 0.6085 -6.4092 -8.9255 21 1 2.7706 -5.3224 -8.7682 22 1 0.9281 -4.2010 -9.8759 23 6 1.6106 -2.9317 -4.7699 24 6 1.7411 -2.2310 -3.6076 25 1 -0.3633 -1.0277 0.0058 26 1 -0.3633 0.5188 0.8871 27 1 -0.3632 0.5088 -0.8929 28 1 4.4070 -1.5446 1.9393 29 1 4.3453 0.0730 1.1966 30 1 3.7098 -2.5436 -0.2418 31 1 5.2446 -1.6552 -0.3731 32 1 3.9102 -1.0165 -2.2659 33 1 3.8934 0.3562 -1.1373 34 1 1.4188 -2.5509 -0.3529 35 1 0.8450 -4.6460 -1.3914 36 1 0.5932 -5.9189 -3.4617 37 1 -0.1313 -2.8017 -6.2888 38 1 1.8267 -2.4568 -5.7155 39 1 2.0609 -1.1998 -3.6334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094477024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:05 Heat of formation + Delta-G solvation = 5.175616 kcal Electronic energy + Delta-G solvation = -19439.363655 eV Core-core repulsion = 16664.722616 eV Total energy + Delta-G solvation = -2774.641039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.87759 -37.10392 -34.18071 -33.32219 -31.79175 -29.65436 -28.70392 -27.58084 -25.13390 -24.08840 -22.19499 -21.09756 -20.74399 -19.43419 -17.79372 -16.99112 -16.17507 -15.34090 -14.83078 -14.68482 -14.29230 -14.02275 -13.84178 -13.54902 -13.37591 -12.83459 -12.64260 -12.23454 -12.05832 -11.95642 -11.80175 -11.63532 -11.24115 -11.14520 -11.02424 -10.97393 -10.78484 -10.44567 -10.32337 -9.70129 -9.56830 -9.39153 -9.07408 -8.58622 -7.73516 -7.69537 -7.02796 -6.51200 -4.08177 1.66652 2.45631 2.91105 2.95247 3.23945 3.37847 3.44332 4.15009 4.23418 4.58395 4.70134 4.76218 4.82046 4.90475 5.16961 5.19547 5.34968 5.53480 5.57804 5.65893 5.72865 5.75873 5.91208 5.96905 6.14450 6.16295 6.20234 6.25797 6.30193 6.76605 6.83535 7.10359 7.40163 7.48947 7.65301 7.90966 7.96824 8.23355 8.37463 8.49346 8.72768 8.97117 9.10205 10.25638 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.004111 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.006355 B = 6810.003404 C = 6872.457830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 H 0.091 0.909 4 S -0.266 6.266 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.144 4.144 8 C 0.165 3.835 9 H 0.083 0.917 10 N -0.746 5.746 11 C 0.086 3.914 12 C -0.145 4.145 13 C -0.189 4.189 14 C 0.066 3.934 15 C -0.535 4.535 16 H 0.068 0.932 17 C 0.040 3.960 18 N -0.814 5.814 19 Si 1.061 2.939 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.181 4.181 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.295 0.705 38 H 0.104 0.896 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 6.855 11.955 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 H 0.109 0.891 4 S -0.040 6.040 5 C -0.228 4.228 6 C -0.156 4.156 7 C -0.184 4.184 8 C 0.055 3.945 9 H 0.100 0.900 10 N -0.383 5.383 11 C -0.011 4.011 12 C -0.167 4.167 13 C -0.209 4.209 14 C 0.063 3.937 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.438 5.438 19 Si 0.886 3.114 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.201 1.201 23 C -0.201 4.201 24 C -0.169 4.169 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.223 6.933 11.118 13.766 hybrid contribution 0.652 0.089 1.034 1.226 sum 4.874 7.023 12.152 14.858 Atomic orbital electron populations 1.21579 0.91492 1.03684 1.02112 1.23538 1.00002 1.00634 0.94327 0.89071 1.86787 1.07598 1.78541 1.31027 1.23447 0.93857 1.04091 1.01368 1.21608 1.00996 1.01028 0.91984 1.22019 0.96881 0.99162 1.00305 1.20572 0.92774 0.85075 0.96038 0.89965 1.44070 1.78810 1.09418 1.06001 1.17249 1.06861 0.91454 0.85572 1.19873 1.06724 0.93087 0.97028 1.20521 1.08833 0.99112 0.92461 1.17550 0.91437 0.92024 0.92677 1.20298 1.47011 0.96016 0.93187 0.91333 1.26813 0.92488 0.94634 1.04058 1.70485 1.23175 1.16651 1.33533 0.83698 0.77409 0.76033 0.74261 1.20413 1.20288 1.20131 1.20752 1.06590 0.96317 0.96423 1.20003 1.07187 0.97885 0.91858 0.91020 0.92232 0.91059 0.88247 0.90321 0.89601 0.91503 0.90527 0.92321 0.77167 0.89446 0.89046 0.89127 0.87814 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.09 37.16 0.34 -1.19 16 2 C -0.06 -0.66 2.90 -26.68 -0.08 -0.74 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 S -0.27 -3.22 20.35 -107.50 -2.19 -5.41 16 5 C -0.08 -0.83 6.45 37.21 0.24 -0.59 16 6 C -0.12 -1.41 5.65 -26.90 -0.15 -1.56 16 7 C -0.14 -1.86 5.30 -27.16 -0.14 -2.00 16 8 C 0.16 2.29 1.87 -68.09 -0.13 2.16 16 9 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 10 N -0.75 -12.20 3.20 -52.19 -0.17 -12.36 16 11 C 0.09 1.77 6.65 -83.69 -0.56 1.21 16 12 C -0.15 -3.19 9.82 -39.77 -0.39 -3.58 16 13 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 14 C 0.07 1.78 5.30 -106.80 -0.57 1.21 16 15 C -0.54 -14.65 8.96 -37.88 -0.34 -14.99 16 16 H 0.07 1.84 7.96 -52.49 -0.42 1.43 16 17 C 0.04 1.04 4.92 -17.34 -0.09 0.95 16 18 N -0.81 -22.22 12.31 55.54 0.68 -21.54 16 19 Si 1.06 22.35 30.00 -169.99 -5.10 17.25 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.18 -4.61 7.90 -39.26 -0.31 -4.92 16 24 C -0.15 -3.28 8.82 -39.77 -0.35 -3.63 16 25 H 0.07 0.95 7.65 -51.93 -0.40 0.56 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 33 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.39 6.26 7.26 -40.82 -0.30 5.96 16 35 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.30 8.27 6.71 -40.82 -0.27 8.00 16 38 H 0.10 2.76 6.49 -52.49 -0.34 2.42 16 39 H 0.09 1.79 5.89 -52.49 -0.31 1.48 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -27.25 316.57 -10.63 -37.88 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.72 Total: 12.11 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -2.90 Total: -32.70 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.52 Total: -33.90 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.10 Total: 17.25 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.19 Total: -5.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.25 -10.63 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094477024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.056 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds