Wall clock time and date at job start Mon Mar 30 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.68411 * 2 1 4 4 S 1.81749 * 109.57830 * 120.32330 * 2 1 3 5 5 C 1.81748 * 102.22338 * 173.07404 * 4 2 1 6 6 C 1.53093 * 108.83821 * 306.73232 * 5 4 2 7 7 C 1.52577 * 109.95745 * 63.02709 * 6 5 4 8 8 C 1.52582 * 110.72739 * 289.32398 * 7 6 5 9 9 H 1.08999 * 109.39582 * 190.72760 * 8 7 6 10 10 N 1.46504 * 109.38930 * 310.52599 * 8 7 6 11 11 C 1.38855 * 120.00043 * 274.99799 * 10 8 7 12 12 C 1.39566 * 119.84454 * 179.97438 * 11 10 8 13 13 C 1.36345 * 120.16518 * 179.97438 * 12 11 10 14 14 C 1.40884 * 119.83274 * 0.02562 * 13 12 11 15 15 C 1.41136 * 120.15580 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99569 * 334.87569 * 15 14 13 17 17 C 1.39863 * 120.00397 * 154.87475 * 15 14 13 18 18 N 1.30904 * 119.99809 * 334.19642 * 17 15 14 19 19 Si 1.86796 * 120.00302 * 154.19020 * 17 15 14 20 20 H 1.48500 * 109.46962 * 60.00232 * 19 17 15 21 21 H 1.48498 * 109.47019 * 300.00503 * 19 17 15 22 22 H 1.48496 * 109.47226 * 180.02562 * 19 17 15 23 23 C 1.40883 * 119.68981 * 0.24640 * 14 13 12 24 24 C 1.36344 * 119.83727 * 359.46768 * 23 14 13 25 25 H 1.09002 * 109.47046 * 180.32309 * 1 2 3 26 26 H 1.08998 * 109.46839 * 300.31892 * 1 2 3 27 27 H 1.08998 * 109.46679 * 60.32402 * 1 2 3 28 28 H 1.08995 * 109.57441 * 186.92730 * 5 4 2 29 29 H 1.08997 * 109.68441 * 66.60577 * 5 4 2 30 30 H 1.09003 * 109.39165 * 302.87785 * 6 5 4 31 31 H 1.09003 * 109.38776 * 183.17505 * 6 5 4 32 32 H 1.09001 * 109.22836 * 169.00687 * 7 6 5 33 33 H 1.09000 * 109.19520 * 49.62388 * 7 6 5 34 34 H 0.96997 * 119.99912 * 94.99905 * 10 8 7 35 35 H 1.08006 * 119.91866 * 359.97438 * 12 11 10 36 36 H 1.07989 * 120.08133 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99996 * 354.23206 * 18 17 15 38 38 H 1.08001 * 120.08234 * 179.72380 * 23 14 13 39 39 H 1.08000 * 119.91797 * 180.26956 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 16 2.1390 -0.8646 1.4781 5 6 3.9293 -0.9342 1.1729 6 6 4.1722 -1.5573 -0.2043 7 6 3.5672 -0.6725 -1.2902 8 6 2.0430 -0.7282 -1.2451 9 1 1.6368 -0.2490 -2.1359 10 7 1.6084 -2.1267 -1.2043 11 6 1.4680 -2.8449 -2.3843 12 6 1.0543 -4.1772 -2.3416 13 6 0.9138 -4.8883 -3.4963 14 6 1.1879 -4.2752 -4.7348 15 6 1.0452 -5.0051 -5.9343 16 1 1.1290 -6.0818 -5.9244 17 6 0.7952 -4.3342 -7.1358 18 7 0.2066 -3.1651 -7.1223 19 14 1.3014 -5.1063 -8.7596 20 1 0.6085 -6.4092 -8.9255 21 1 2.7706 -5.3224 -8.7682 22 1 0.9281 -4.2010 -9.8759 23 6 1.6106 -2.9317 -4.7699 24 6 1.7411 -2.2310 -3.6076 25 1 -0.3633 -1.0277 0.0058 26 1 -0.3633 0.5188 0.8871 27 1 -0.3632 0.5088 -0.8929 28 1 4.4070 -1.5446 1.9393 29 1 4.3453 0.0730 1.1966 30 1 3.7098 -2.5436 -0.2418 31 1 5.2446 -1.6552 -0.3731 32 1 3.9102 -1.0165 -2.2659 33 1 3.8934 0.3562 -1.1373 34 1 1.4188 -2.5509 -0.3529 35 1 0.8450 -4.6460 -1.3914 36 1 0.5932 -5.9189 -3.4617 37 1 -0.1313 -2.8017 -6.2888 38 1 1.8267 -2.4568 -5.7155 39 1 2.0609 -1.1998 -3.6334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094477024.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:05 Heat of formation + Delta-G solvation = -7.236480 kcal Electronic energy + Delta-G solvation = -19439.901884 eV Core-core repulsion = 16664.722616 eV Total energy + Delta-G solvation = -2775.179268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38419 -38.65975 -35.88868 -34.44420 -33.29644 -31.51548 -30.15095 -28.99331 -26.42759 -25.67163 -23.55329 -22.51985 -22.40323 -20.77171 -19.73855 -18.27567 -17.50350 -16.63951 -16.27278 -15.89029 -15.72844 -15.50809 -15.17405 -14.89820 -14.73873 -14.11670 -14.01811 -13.87314 -13.76404 -13.28400 -13.19882 -12.91010 -12.66446 -12.64297 -12.49952 -12.05696 -11.98432 -11.95503 -11.57345 -11.40422 -11.28270 -10.85992 -10.59600 -10.39711 -9.60365 -9.05074 -8.70144 -8.24489 -6.08089 0.75076 0.99087 1.10762 1.52226 1.55928 1.68623 1.81273 2.40548 2.79352 2.85020 3.53825 3.66773 3.80998 3.87450 3.95742 4.20645 4.21411 4.33113 4.37456 4.44971 4.61945 4.66662 4.78022 4.81981 4.83632 4.87965 4.99513 5.02670 5.17824 5.20591 5.22734 5.30691 5.52217 5.60005 5.75869 5.92165 5.95149 6.33375 6.41957 6.74044 6.99239 7.11267 7.27074 8.20971 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.004111 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.006355 B = 6810.003404 C = 6872.457830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.047 4.047 3 H 0.113 0.887 4 S -0.287 6.287 5 C -0.070 4.070 6 C -0.115 4.115 7 C -0.142 4.142 8 C 0.159 3.841 9 H 0.073 0.927 10 N -0.732 5.732 11 C 0.119 3.881 12 C -0.155 4.155 13 C -0.197 4.197 14 C 0.028 3.972 15 C -0.575 4.575 16 H 0.059 0.941 17 C 0.002 3.998 18 N -0.837 5.837 19 Si 1.113 2.887 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.273 1.273 23 C -0.190 4.190 24 C -0.155 4.155 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.398 0.602 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.278 0.722 38 H 0.083 0.917 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.808 8.040 13.798 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.176 4.176 3 H 0.131 0.869 4 S -0.060 6.060 5 C -0.218 4.218 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.051 3.949 9 H 0.091 0.909 10 N -0.368 5.368 11 C 0.019 3.981 12 C -0.177 4.177 13 C -0.217 4.217 14 C 0.025 3.975 15 C -0.605 4.605 16 H 0.078 0.922 17 C -0.211 4.211 18 N -0.462 5.462 19 Si 0.931 3.069 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.197 1.197 23 C -0.210 4.210 24 C -0.177 4.177 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.236 0.764 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.301 8.139 13.026 16.248 hybrid contribution 0.359 -0.188 0.763 0.864 sum 5.660 7.950 13.789 16.893 Atomic orbital electron populations 1.21567 0.91489 1.02709 1.02979 1.23474 0.99968 1.01281 0.92857 0.86863 1.86952 1.09408 1.78700 1.30953 1.23475 0.92434 1.05340 1.00530 1.21553 1.01515 0.99591 0.92693 1.21973 0.95640 1.00913 0.99573 1.20772 0.93767 0.83338 0.97055 0.90932 1.44132 1.77604 1.10431 1.04679 1.17327 1.03039 0.91135 0.86567 1.20132 1.06653 0.93619 0.97329 1.20692 1.08688 0.99474 0.92826 1.17834 0.93212 0.92981 0.93483 1.20469 1.49645 0.95785 0.94605 0.92229 1.28189 0.91310 0.94404 1.07203 1.70606 1.25360 1.17935 1.32339 0.83056 0.77716 0.75864 0.70233 1.18625 1.19184 1.19720 1.20687 1.07301 0.96259 0.96750 1.20150 1.07332 0.98802 0.91420 0.92867 0.90786 0.90861 0.86966 0.88391 0.92016 0.90190 0.92704 0.89716 0.76449 0.86740 0.88965 0.90984 0.89838 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.09 71.98 0.65 -2.05 16 2 C -0.05 -0.96 2.90 30.63 0.09 -0.87 16 3 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 4 S -0.29 -6.03 20.35 -56.49 -1.15 -7.18 16 5 C -0.07 -1.20 6.45 72.01 0.46 -0.73 16 6 C -0.11 -2.41 5.65 30.49 0.17 -2.23 16 7 C -0.14 -3.25 5.30 30.32 0.16 -3.09 16 8 C 0.16 4.02 1.87 44.88 0.08 4.10 16 9 H 0.07 2.03 6.43 -2.39 -0.02 2.02 16 10 N -0.73 -22.52 3.20 -319.03 -1.02 -23.54 16 11 C 0.12 4.80 6.65 38.67 0.26 5.06 16 12 C -0.16 -6.71 9.82 22.15 0.22 -6.49 16 13 C -0.20 -9.88 9.74 22.48 0.22 -9.66 16 14 C 0.03 1.56 5.30 -21.27 -0.11 1.45 16 15 C -0.57 -32.87 8.96 23.37 0.21 -32.66 16 16 H 0.06 3.36 7.96 -2.91 -0.02 3.34 16 17 C 0.00 0.11 4.92 85.22 0.42 0.53 16 18 N -0.84 -47.62 12.31 21.82 0.27 -47.35 16 19 Si 1.11 45.96 30.00 68.60 2.06 48.01 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 C -0.19 -10.00 7.90 22.48 0.18 -9.83 16 24 C -0.15 -6.88 8.82 22.15 0.20 -6.68 16 25 H 0.05 1.31 7.65 -2.39 -0.02 1.29 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.61 7.01 -2.39 -0.02 1.59 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 33 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.40 11.77 7.26 -92.71 -0.67 11.10 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.09 4.49 8.06 -2.92 -0.02 4.46 16 37 H 0.28 16.44 6.71 -92.71 -0.62 15.82 16 38 H 0.08 4.68 6.49 -2.91 -0.02 4.66 16 39 H 0.11 4.35 5.89 -2.91 -0.02 4.33 16 Total: -1.00 -61.27 316.57 3.88 -57.39 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.52 Total: 35.82 kcal Atomic # 6 Polarization: -66.36 SS G_CDS: 3.21 Total: -63.15 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.75 Total: -70.89 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.06 Total: 48.01 kcal Atomic # 16 Polarization: -6.03 SS G_CDS: -1.15 Total: -7.18 kcal Total: -61.27 3.88 -57.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094477024.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.154 kcal (2) G-P(sol) polarization free energy of solvation -61.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds