Wall clock time and date at job start Mon Mar 30 2020 08:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99717 * 2 1 4 4 C 1.50707 * 109.47001 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.91900 * 89.99522 * 4 3 2 6 6 C 1.38084 * 120.08083 * 179.74674 * 5 4 3 7 7 C 1.38973 * 119.91742 * 0.25508 * 6 5 4 8 8 S 1.76194 * 120.07984 * 179.97438 * 7 6 5 9 9 C 1.81400 * 103.00173 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47240 * 177.80589 * 9 8 7 11 11 C 1.50703 * 115.55044 * 65.25189 * 10 9 8 12 12 H 1.07994 * 120.00106 * 267.92615 * 11 10 9 13 13 C 1.37883 * 119.99591 * 87.92249 * 11 10 9 14 14 N 1.31518 * 119.99739 * 175.16520 * 13 11 10 15 15 Si 1.86792 * 120.00221 * 355.17276 * 13 11 10 16 16 H 1.48500 * 109.47399 * 92.12881 * 15 13 11 17 17 H 1.48506 * 109.46999 * 212.12827 * 15 13 11 18 18 H 1.48498 * 109.47077 * 332.12456 * 15 13 11 19 19 C 1.53002 * 117.50386 * 279.58265 * 10 9 8 20 20 C 1.53006 * 117.50037 * 210.92132 * 10 9 8 21 21 C 1.38972 * 119.83884 * 0.02562 * 7 6 5 22 22 C 1.38085 * 119.92274 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.46838 * 60.00467 * 1 2 3 24 24 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47691 * 300.00498 * 1 2 3 26 26 H 1.00888 * 111.00214 * 236.04084 * 2 1 3 27 27 H 1.09000 * 109.47371 * 59.99420 * 3 2 1 28 28 H 1.08995 * 109.47201 * 299.99425 * 3 2 1 29 29 H 1.08008 * 119.95850 * 0.02562 * 5 4 3 30 30 H 1.07997 * 120.03884 * 180.28038 * 6 5 4 31 31 H 1.08996 * 109.47277 * 297.81115 * 9 8 7 32 32 H 1.09000 * 109.46867 * 57.80721 * 9 8 7 33 33 H 0.97002 * 120.00030 * 179.97438 * 14 13 11 34 34 H 1.09003 * 117.49493 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50357 * 145.01913 * 19 10 9 36 36 H 1.08998 * 117.49790 * 214.97920 * 20 10 9 37 37 H 1.08994 * 117.49465 * 359.97438 * 20 10 9 38 38 H 1.08001 * 120.04033 * 180.02562 * 21 7 6 39 39 H 1.07992 * 119.96113 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1920 1.3126 -1.1977 6 6 5.5725 1.2811 -1.2011 7 6 6.2683 1.2628 0.0018 8 16 8.0297 1.2219 0.0025 9 6 8.4369 1.2100 1.7702 10 6 9.9543 1.1193 1.9434 11 6 10.7377 2.3053 1.4426 12 1 11.1192 2.3128 0.4322 13 6 10.9675 3.3807 2.2743 14 7 11.7305 4.3730 1.8706 15 14 10.1952 3.4284 3.9744 16 1 11.1351 2.8392 4.9617 17 1 9.9046 4.8363 4.3468 18 1 8.9321 2.6477 3.9663 19 6 10.5996 -0.2614 1.8087 20 6 10.4817 0.3977 3.1853 21 6 5.5713 1.2757 1.2040 22 6 4.1908 1.3062 1.1996 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8306 -0.5261 -0.7812 27 1 1.6458 1.8948 0.8899 28 1 1.6460 1.8947 -0.8900 29 1 3.6505 1.3272 -2.1322 30 1 6.1107 1.2711 -2.1373 31 1 8.0725 2.1270 2.2332 32 1 7.9649 0.3504 2.2460 33 1 11.8919 5.1298 2.4555 34 1 9.9430 -1.1052 1.5962 35 1 11.5908 -0.3120 1.3581 36 1 11.3956 0.7805 3.6397 37 1 9.7477 -0.0120 3.8789 38 1 6.1087 1.2620 2.1407 39 1 3.6486 1.3159 2.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123903093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:29:19 Heat of formation + Delta-G solvation = 47.556611 kcal Electronic energy + Delta-G solvation = -18400.056157 eV Core-core repulsion = 15627.252895 eV Total energy + Delta-G solvation = -2772.803261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.16146 -37.04938 -36.09527 -32.12835 -31.55493 -30.92626 -28.15655 -26.83082 -25.43849 -23.83105 -22.49987 -21.68789 -21.26375 -19.20918 -17.41735 -16.57733 -16.16174 -15.48801 -15.01384 -14.92317 -14.77243 -14.33584 -14.01175 -13.78312 -13.37215 -13.16920 -12.94396 -12.75682 -12.47809 -12.33768 -12.10937 -11.92210 -11.31546 -11.07828 -10.96971 -10.72136 -10.49675 -10.22351 -9.76120 -9.60624 -9.39850 -9.07720 -8.83787 -8.71003 -8.62771 -8.46183 -6.80109 -6.14220 -4.17517 1.33966 1.53977 2.09225 3.12701 3.24572 3.34680 3.36760 3.71232 4.23821 4.37588 4.74122 4.83310 4.89928 5.05816 5.08663 5.11339 5.15267 5.26483 5.41852 5.50494 5.54149 5.56460 5.74367 5.83943 5.92119 5.99643 6.06803 6.14480 6.28270 6.40412 6.42309 6.51383 6.63343 6.66475 6.70175 6.95876 7.05734 7.06661 7.07487 7.66386 8.44967 8.90631 9.48224 10.97570 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.003947 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.184591 B = 7092.551004 C = 7242.021146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.103 3.897 4 C -0.111 4.111 5 C -0.095 4.095 6 C -0.109 4.109 7 C -0.078 4.078 8 S -0.075 6.075 9 C -0.066 4.066 10 C 0.011 3.989 11 C -0.485 4.485 12 H 0.082 0.918 13 C 0.081 3.919 14 N -0.893 5.893 15 Si 0.876 3.124 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.261 1.261 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.142 4.142 22 C -0.076 4.076 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.343 0.657 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 -7.532 -2.855 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C -0.025 4.025 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.134 4.134 7 C -0.192 4.192 8 S 0.174 5.826 9 C -0.214 4.214 10 C 0.008 3.992 11 C -0.522 4.522 12 H 0.100 0.900 13 C -0.122 4.122 14 N -0.530 5.530 15 Si 0.704 3.296 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.185 1.185 19 C -0.211 4.211 20 C -0.231 4.231 21 C -0.167 4.167 22 C -0.096 4.096 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.327 -7.414 -3.024 19.088 hybrid contribution -1.445 0.502 1.228 1.962 sum -18.773 -6.912 -1.796 20.085 Atomic orbital electron populations 1.22210 0.87862 1.01878 1.00346 1.60443 1.07383 1.14001 1.50370 1.20841 0.91008 0.89652 1.01013 1.19577 0.94418 1.04129 0.93338 1.20853 0.93734 0.99887 0.97094 1.20683 0.93650 1.02484 0.96562 1.22325 0.99599 1.01206 0.96081 1.85831 0.94434 1.89687 1.12604 1.23665 1.01383 1.03361 0.93023 1.19012 0.88325 0.93629 0.98201 1.20215 1.32815 0.98464 1.00740 0.89997 1.24956 0.94024 0.95174 0.98069 1.69892 1.36626 1.09138 1.37313 0.86902 0.80831 0.76863 0.84999 1.20302 1.21895 1.18521 1.22863 1.02201 0.96274 0.99765 1.23041 1.02873 1.06080 0.91074 1.21243 0.94680 1.03681 0.97057 1.20834 0.93410 0.97930 0.97425 0.96116 0.91406 0.91705 0.83905 0.90383 0.94533 0.86412 0.85668 0.89766 0.91824 0.92488 0.90632 0.89177 0.89009 0.90891 0.85931 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.70 60.07 0.64 0.84 16 2 N -0.69 -6.53 6.84 -122.42 -0.84 -7.36 16 3 C 0.10 1.02 5.81 -4.97 -0.03 0.99 16 4 C -0.11 -1.36 5.40 -104.57 -0.56 -1.93 16 5 C -0.10 -1.18 9.69 -39.62 -0.38 -1.56 16 6 C -0.11 -1.60 9.79 -39.37 -0.39 -1.99 16 7 C -0.08 -1.32 6.11 -39.04 -0.24 -1.56 16 8 S -0.08 -1.47 21.61 -107.50 -2.32 -3.79 16 9 C -0.07 -1.34 3.81 37.15 0.14 -1.20 16 10 C 0.01 0.24 0.79 -155.66 -0.12 0.12 16 11 C -0.49 -13.18 9.07 -34.44 -0.31 -13.50 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 14 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 15 Si 0.88 21.14 24.98 -169.99 -4.25 16.89 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.26 -5.88 5.66 56.52 0.32 -5.56 16 19 C -0.17 -3.47 9.96 -26.69 -0.27 -3.73 16 20 C -0.19 -3.93 7.69 -26.69 -0.21 -4.14 16 21 C -0.14 -2.25 9.36 -39.37 -0.37 -2.62 16 22 C -0.08 -1.03 9.69 -39.61 -0.38 -1.42 16 23 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.34 3.02 8.81 -39.30 -0.35 2.67 16 27 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 28 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.08 1.80 6.20 -51.93 -0.32 1.48 16 32 H 0.06 1.16 7.57 -51.92 -0.39 0.76 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.09 1.98 7.37 -51.93 -0.38 1.60 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.12 1.95 5.88 -52.49 -0.31 1.64 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -29.41 332.00 -10.24 -39.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.04 Total: 5.12 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -2.57 Total: -29.53 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.06 Total: -33.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.25 Total: 16.89 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.32 Total: -3.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.41 -10.24 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123903093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.212 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds