Wall clock time and date at job start Mon Mar 30 2020 08:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99717 * 2 1 4 4 C 1.50707 * 109.47001 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.91900 * 89.99522 * 4 3 2 6 6 C 1.38084 * 120.08083 * 179.74674 * 5 4 3 7 7 C 1.38973 * 119.91742 * 0.25508 * 6 5 4 8 8 S 1.76194 * 120.07984 * 179.97438 * 7 6 5 9 9 C 1.81400 * 103.00173 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47240 * 177.80589 * 9 8 7 11 11 C 1.50703 * 115.55044 * 65.25189 * 10 9 8 12 12 H 1.07994 * 120.00106 * 267.92615 * 11 10 9 13 13 C 1.37883 * 119.99591 * 87.92249 * 11 10 9 14 14 N 1.31518 * 119.99739 * 175.16520 * 13 11 10 15 15 Si 1.86792 * 120.00221 * 355.17276 * 13 11 10 16 16 H 1.48500 * 109.47399 * 92.12881 * 15 13 11 17 17 H 1.48506 * 109.46999 * 212.12827 * 15 13 11 18 18 H 1.48498 * 109.47077 * 332.12456 * 15 13 11 19 19 C 1.53002 * 117.50386 * 279.58265 * 10 9 8 20 20 C 1.53006 * 117.50037 * 210.92132 * 10 9 8 21 21 C 1.38972 * 119.83884 * 0.02562 * 7 6 5 22 22 C 1.38085 * 119.92274 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.46838 * 60.00467 * 1 2 3 24 24 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47691 * 300.00498 * 1 2 3 26 26 H 1.00888 * 111.00214 * 236.04084 * 2 1 3 27 27 H 1.09000 * 109.47371 * 59.99420 * 3 2 1 28 28 H 1.08995 * 109.47201 * 299.99425 * 3 2 1 29 29 H 1.08008 * 119.95850 * 0.02562 * 5 4 3 30 30 H 1.07997 * 120.03884 * 180.28038 * 6 5 4 31 31 H 1.08996 * 109.47277 * 297.81115 * 9 8 7 32 32 H 1.09000 * 109.46867 * 57.80721 * 9 8 7 33 33 H 0.97002 * 120.00030 * 179.97438 * 14 13 11 34 34 H 1.09003 * 117.49493 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.50357 * 145.01913 * 19 10 9 36 36 H 1.08998 * 117.49790 * 214.97920 * 20 10 9 37 37 H 1.08994 * 117.49465 * 359.97438 * 20 10 9 38 38 H 1.08001 * 120.04033 * 180.02562 * 21 7 6 39 39 H 1.07992 * 119.96113 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3313 0.0006 5 6 4.1920 1.3126 -1.1977 6 6 5.5725 1.2811 -1.2011 7 6 6.2683 1.2628 0.0018 8 16 8.0297 1.2219 0.0025 9 6 8.4369 1.2100 1.7702 10 6 9.9543 1.1193 1.9434 11 6 10.7377 2.3053 1.4426 12 1 11.1192 2.3128 0.4322 13 6 10.9675 3.3807 2.2743 14 7 11.7305 4.3730 1.8706 15 14 10.1952 3.4284 3.9744 16 1 11.1351 2.8392 4.9617 17 1 9.9046 4.8363 4.3468 18 1 8.9321 2.6477 3.9663 19 6 10.5996 -0.2614 1.8087 20 6 10.4817 0.3977 3.1853 21 6 5.5713 1.2757 1.2040 22 6 4.1908 1.3062 1.1996 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8306 -0.5261 -0.7812 27 1 1.6458 1.8948 0.8899 28 1 1.6460 1.8947 -0.8900 29 1 3.6505 1.3272 -2.1322 30 1 6.1107 1.2711 -2.1373 31 1 8.0725 2.1270 2.2332 32 1 7.9649 0.3504 2.2460 33 1 11.8919 5.1298 2.4555 34 1 9.9430 -1.1052 1.5962 35 1 11.5908 -0.3120 1.3581 36 1 11.3956 0.7805 3.6397 37 1 9.7477 -0.0120 3.8789 38 1 6.1087 1.2620 2.1407 39 1 3.6486 1.3159 2.1335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123903093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:29:18 Heat of formation + Delta-G solvation = 30.134575 kcal Electronic energy + Delta-G solvation = -18400.811633 eV Core-core repulsion = 15627.252895 eV Total energy + Delta-G solvation = -2773.558737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20453 -38.77324 -36.85574 -34.25184 -32.53310 -32.02605 -29.73195 -27.76488 -27.37339 -24.56652 -23.61603 -23.31792 -22.26068 -21.01805 -18.84076 -18.10208 -17.31357 -16.90995 -16.46789 -15.99843 -15.66602 -15.56262 -15.37615 -14.99458 -14.83243 -14.65116 -14.35268 -14.13914 -13.74024 -13.48610 -13.04762 -13.01996 -12.70167 -12.62105 -12.25798 -12.08460 -11.97692 -11.95726 -11.69564 -11.10704 -10.93180 -10.69941 -10.47523 -10.20166 -9.91828 -9.38604 -8.30214 -8.22259 -6.36773 0.23625 0.44917 0.68101 1.33959 1.36327 1.46913 1.71290 2.35672 2.68407 3.03847 3.22268 3.50506 3.83486 3.91226 3.94242 4.04456 4.18240 4.31249 4.36155 4.37836 4.46294 4.55035 4.60791 4.64491 4.68856 4.74563 4.83719 4.88209 5.04018 5.06872 5.10373 5.26260 5.34201 5.39865 5.45424 5.63011 5.67174 5.95815 6.05546 6.29201 6.43223 6.71053 7.32297 8.86370 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.003947 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.184591 B = 7092.551004 C = 7242.021146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.704 5.704 3 C 0.107 3.893 4 C -0.099 4.099 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.096 4.096 8 S -0.129 6.129 9 C -0.051 4.051 10 C -0.017 4.017 11 C -0.481 4.481 12 H 0.031 0.969 13 C 0.023 3.977 14 N -0.948 5.948 15 Si 0.935 3.065 16 H -0.265 1.265 17 H -0.299 1.299 18 H -0.232 1.232 19 C -0.159 4.159 20 C -0.181 4.181 21 C -0.154 4.154 22 C -0.081 4.081 23 H 0.030 0.970 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.346 0.654 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 -9.108 -1.801 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.335 5.335 3 C -0.022 4.022 4 C -0.103 4.103 5 C -0.110 4.110 6 C -0.141 4.141 7 C -0.209 4.209 8 S 0.118 5.882 9 C -0.199 4.199 10 C -0.019 4.019 11 C -0.518 4.518 12 H 0.050 0.950 13 C -0.175 4.175 14 N -0.587 5.587 15 Si 0.759 3.241 16 H -0.190 1.190 17 H -0.226 1.226 18 H -0.155 1.155 19 C -0.197 4.197 20 C -0.220 4.220 21 C -0.178 4.178 22 C -0.101 4.101 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.164 0.836 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.862 -9.025 -1.974 22.816 hybrid contribution -0.459 0.960 0.734 1.293 sum -21.321 -8.065 -1.240 22.829 Atomic orbital electron populations 1.22246 0.86501 1.02628 1.00831 1.60425 1.08726 1.13593 1.50797 1.20833 0.88983 0.90325 1.02043 1.19939 0.96005 1.01580 0.92752 1.21180 0.92743 0.98380 0.98655 1.20897 0.94803 1.02319 0.96080 1.22212 0.97217 1.04001 0.97475 1.85902 0.98298 1.91130 1.12844 1.23390 0.99472 1.03708 0.93310 1.18888 0.89297 0.93030 1.00668 1.20320 1.32474 1.00457 0.98591 0.95048 1.25809 0.94542 0.94686 1.02448 1.70051 1.39140 1.10311 1.39208 0.85946 0.81285 0.76918 0.79929 1.19035 1.22576 1.15526 1.22882 1.01876 0.95627 0.99281 1.23105 1.02848 1.04838 0.91205 1.21324 0.95715 1.04265 0.96488 1.21084 0.92587 0.97539 0.98909 0.95192 0.90606 0.91600 0.83573 0.89896 0.93044 0.83253 0.85267 0.91209 0.89165 0.92576 0.87746 0.90310 0.90309 0.87506 0.86346 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 127.69 1.37 1.67 16 2 N -0.70 -10.86 6.84 -541.21 -3.70 -14.57 16 3 C 0.11 1.70 5.81 85.56 0.50 2.20 16 4 C -0.10 -2.13 5.40 -19.83 -0.11 -2.24 16 5 C -0.09 -1.96 9.69 22.25 0.22 -1.74 16 6 C -0.12 -3.27 9.79 22.41 0.22 -3.05 16 7 C -0.10 -3.16 6.11 22.62 0.14 -3.02 16 8 S -0.13 -5.11 21.61 -56.49 -1.22 -6.33 16 9 C -0.05 -2.01 3.81 71.98 0.27 -1.74 16 10 C -0.02 -0.75 0.79 -52.93 -0.04 -0.79 16 11 C -0.48 -27.14 9.07 25.60 0.23 -26.91 16 12 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 13 C 0.02 1.31 5.47 84.66 0.46 1.77 16 14 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 15 Si 0.93 43.58 24.98 68.60 1.71 45.30 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 18 H -0.23 -9.68 5.66 99.48 0.56 -9.11 16 19 C -0.16 -6.15 9.96 30.62 0.30 -5.84 16 20 C -0.18 -7.00 7.69 30.62 0.24 -6.77 16 21 C -0.15 -4.65 9.36 22.41 0.21 -4.44 16 22 C -0.08 -2.01 9.69 22.25 0.22 -1.79 16 23 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.35 4.93 8.81 -89.70 -0.79 4.14 16 27 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 28 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.07 2.92 6.20 -2.39 -0.01 2.91 16 32 H 0.09 3.06 7.57 -2.39 -0.02 3.04 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.08 3.27 7.37 -2.39 -0.02 3.25 16 37 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.12 3.59 5.88 -2.91 -0.02 3.58 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -66.52 332.00 1.41 -65.11 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.10 Total: 22.29 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 4.22 Total: -52.68 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -3.40 Total: -73.69 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.71 Total: 45.30 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -1.22 Total: -6.33 kcal Total: -66.52 1.41 -65.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123903093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.246 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds