Wall clock time and date at job start Mon Mar 30 2020 08:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.64150 * 2 1 4 4 C 1.55156 * 110.72227 * 123.14031 * 2 1 3 5 5 C 1.54906 * 101.61451 * 82.84101 * 4 2 1 6 6 N 1.47536 * 104.78210 * 37.00903 * 5 4 2 7 7 C 1.34776 * 125.63600 * 155.84644 * 6 5 4 8 8 O 1.21684 * 119.99888 * 180.02562 * 7 6 5 9 9 C 1.46375 * 119.99968 * 0.03418 * 7 6 5 10 10 H 1.07996 * 120.00298 * 0.02562 * 9 7 6 11 11 C 1.40044 * 119.99745 * 179.97438 * 9 7 6 12 12 N 1.30670 * 120.00258 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99925 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47048 * 120.00378 * 13 11 9 16 16 H 1.48499 * 109.47151 * 240.00118 * 13 11 9 17 17 C 1.47019 * 108.71308 * 335.87624 * 6 5 4 18 18 H 1.09000 * 109.88178 * 120.47759 * 17 6 5 19 19 C 1.50701 * 110.01039 * 241.57037 * 17 6 5 20 20 C 1.38274 * 119.98382 * 217.88562 * 19 17 6 21 21 C 1.38224 * 120.04670 * 180.02562 * 20 19 17 22 22 C 1.38217 * 120.02926 * 0.02562 * 21 20 19 23 23 C 1.38436 * 119.97061 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02266 * 180.02562 * 23 22 21 25 25 C 1.38171 * 119.98810 * 37.61680 * 19 17 6 26 26 H 1.09005 * 109.46975 * 298.31422 * 1 2 3 27 27 H 1.09001 * 109.47359 * 58.31029 * 1 2 3 28 28 H 1.09001 * 109.47107 * 178.31175 * 1 2 3 29 29 H 1.09002 * 111.00677 * 200.93685 * 4 2 1 30 30 H 1.09002 * 111.00564 * 324.74943 * 4 2 1 31 31 H 1.09008 * 110.36767 * 155.86672 * 5 4 2 32 32 H 1.08997 * 110.36995 * 278.19392 * 5 4 2 33 33 H 0.96999 * 120.00438 * 179.97438 * 12 11 9 34 34 H 1.08001 * 119.97633 * 0.02562 * 20 19 17 35 35 H 1.08001 * 119.98110 * 180.02562 * 21 20 19 36 36 H 1.07991 * 120.01401 * 180.02562 * 22 21 20 37 37 H 1.07996 * 120.01458 * 359.97438 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 2.0124 -2.2500 0.6923 6 7 2.3716 -2.1543 -0.7354 7 6 2.8862 -3.1499 -1.4841 8 8 3.1461 -2.9570 -2.6571 9 6 3.1321 -4.4631 -0.8863 10 1 2.9009 -4.6345 0.1546 11 6 3.6663 -5.4977 -1.6645 12 7 3.9456 -5.2906 -2.9241 13 14 3.9796 -7.1739 -0.9018 14 1 3.5809 -7.1493 0.5285 15 1 3.1828 -8.2011 -1.6196 16 1 5.4235 -7.5041 -1.0081 17 6 2.0760 -0.7932 -1.2059 18 1 2.9868 -0.3233 -1.5771 19 6 1.0408 -0.8393 -2.3002 20 6 1.1341 0.0237 -3.3765 21 6 0.1851 -0.0171 -4.3807 22 6 -0.8587 -0.9203 -4.3096 23 6 -0.9531 -1.7848 -3.2324 24 9 -1.9726 -2.6684 -3.1621 25 6 0.0019 -1.7476 -2.2303 26 1 -0.3633 0.4875 0.9048 27 1 -0.3634 0.5398 -0.8744 28 1 -0.3633 -1.0272 -0.0303 29 1 3.1061 -0.5048 1.4384 30 1 1.4400 -0.6621 2.0884 31 1 2.7290 -2.8768 1.2234 32 1 1.0037 -2.6475 0.8040 33 1 4.3159 -6.0070 -3.4630 34 1 1.9492 0.7301 -3.4327 35 1 0.2593 0.6571 -5.2211 36 1 -1.5998 -0.9523 -5.0944 37 1 -0.0681 -2.4247 -1.3919 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153936310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:00 Heat of formation + Delta-G solvation = -55.444204 kcal Electronic energy + Delta-G solvation = -22177.080897 eV Core-core repulsion = 18833.598009 eV Total energy + Delta-G solvation = -3343.482888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.45334 -39.89313 -37.61369 -35.91508 -32.54171 -31.84190 -31.19844 -30.13829 -27.83606 -27.03669 -25.42437 -22.82422 -22.26702 -21.49298 -19.84282 -18.79694 -16.88279 -16.63868 -15.88480 -15.80396 -15.43879 -15.21965 -15.04331 -14.35386 -13.90043 -13.62744 -13.38586 -13.28044 -12.71752 -12.53294 -12.46459 -11.90919 -11.69858 -11.55677 -11.53932 -11.26457 -11.16450 -10.98029 -10.80903 -10.56537 -10.45538 -10.22251 -10.17836 -10.07994 -8.87645 -8.43383 -8.22798 -7.59683 -7.27118 -6.20605 -4.65471 1.61731 1.69174 3.11871 3.20156 3.24192 3.97134 4.08941 4.53133 4.54755 4.69348 4.87266 4.99943 5.08125 5.17749 5.33160 5.46385 5.62821 5.66679 5.70708 5.77943 5.83856 5.86779 5.94953 6.17812 6.23395 6.26214 6.29309 6.38447 6.47273 6.51090 6.61487 6.62837 6.73472 7.00666 7.30373 7.37668 7.42726 8.09117 8.39085 9.01170 9.46894 10.56781 10.75819 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.007136 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.962430 B = 3922.578906 C = 4714.152739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.116 3.884 6 N -0.637 5.637 7 C 0.571 3.429 8 O -0.566 6.566 9 C -0.539 4.539 10 H 0.069 0.931 11 C 0.087 3.913 12 N -0.766 5.766 13 Si 0.906 3.094 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.182 3.818 18 H 0.070 0.930 19 C -0.028 4.028 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.167 4.167 23 C 0.090 3.910 24 F -0.147 7.147 25 C -0.120 4.120 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 10.252 4.677 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.169 4.169 5 C -0.008 4.008 6 N -0.377 5.377 7 C 0.378 3.622 8 O -0.447 6.447 9 C -0.576 4.576 10 H 0.087 0.913 11 C -0.133 4.133 12 N -0.395 5.395 13 Si 0.730 3.270 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.201 1.201 17 C 0.076 3.924 18 H 0.087 0.913 19 C -0.029 4.029 20 C -0.143 4.143 21 C -0.114 4.114 22 C -0.186 4.186 23 C 0.071 3.929 24 F -0.126 7.126 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.723 10.152 3.790 12.752 hybrid contribution -0.005 -1.142 0.300 1.181 sum -6.728 9.010 4.090 11.965 Atomic orbital electron populations 1.21953 0.94612 1.02421 1.01102 1.22149 0.96130 0.98664 0.94419 0.90153 1.22882 1.01125 0.96026 0.96856 1.21948 0.99423 0.95266 0.84169 1.48939 1.69178 1.09906 1.09702 1.18045 0.76408 0.82745 0.85013 1.90631 1.55706 1.81957 1.16399 1.20914 1.44959 0.94146 0.97535 0.91255 1.25713 0.93379 0.99815 0.94351 1.70025 1.30910 1.32274 1.06247 0.86342 0.78409 0.82145 0.80064 1.18738 1.20163 1.20143 1.20202 0.94271 0.86716 0.91187 0.91251 1.20005 0.94032 0.93264 0.95627 1.20971 0.99129 1.00120 0.94041 1.20814 0.93934 0.98206 0.98474 1.20946 1.01175 0.98246 0.98189 1.17695 0.87361 0.90901 0.96962 1.91453 1.57598 1.67036 1.96481 1.20920 0.94055 0.99936 0.98991 0.92995 0.92492 0.91918 0.91024 0.90822 0.91011 0.93583 0.92154 0.85978 0.85696 0.85621 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.72 37.15 0.29 -1.57 16 2 C -0.09 -1.32 3.55 -88.79 -0.31 -1.63 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.13 -1.77 6.57 -24.58 -0.16 -1.93 16 5 C 0.12 2.05 6.21 -2.47 -0.02 2.04 16 6 N -0.64 -14.03 2.31 -165.88 -0.38 -14.42 16 7 C 0.57 16.00 7.39 -12.99 -0.10 15.91 16 8 O -0.57 -18.06 14.86 5.20 0.08 -17.99 16 9 C -0.54 -15.08 8.98 -35.63 -0.32 -15.40 16 10 H 0.07 1.79 6.64 -52.49 -0.35 1.44 16 11 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 12 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 13 Si 0.91 20.23 29.56 -169.99 -5.02 15.20 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 C 0.18 3.37 3.00 -68.11 -0.20 3.17 16 18 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 19 C -0.03 -0.52 2.92 -104.63 -0.31 -0.82 16 20 C -0.12 -2.07 9.68 -39.57 -0.38 -2.46 16 21 C -0.10 -1.46 10.04 -39.59 -0.40 -1.86 16 22 C -0.17 -2.69 10.03 -39.52 -0.40 -3.09 16 23 C 0.09 1.67 7.30 -39.42 -0.29 1.38 16 24 F -0.15 -2.75 17.27 2.25 0.04 -2.71 16 25 C -0.12 -2.35 7.04 -39.52 -0.28 -2.63 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 28 H 0.06 0.90 5.51 -51.93 -0.29 0.62 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.07 1.30 7.15 -51.92 -0.37 0.93 16 32 H 0.05 0.78 7.77 -51.93 -0.40 0.38 16 33 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 34 H 0.12 1.79 8.05 -52.49 -0.42 1.36 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.69 6.88 -52.49 -0.36 2.33 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -33.85 307.18 -7.62 -41.47 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.65 Total: 2.68 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.97 Total: -6.55 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.27 Total: -36.74 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.08 Total: -17.99 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.85 -7.62 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153936310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.974 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds