Wall clock time and date at job start Mon Mar 30 2020 07:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 110.30228 * 2 1 4 4 N 1.46495 * 109.47212 * 65.71575 * 3 2 1 5 5 C 1.39678 * 120.00153 * 179.97438 * 4 3 2 6 6 C 1.39338 * 119.94890 * 0.02562 * 5 4 3 7 7 C 1.38482 * 120.42258 * 179.97438 * 6 5 4 8 8 C 1.37696 * 120.32248 * 359.71901 * 7 6 5 9 9 C 1.40743 * 119.89202 * 0.53800 * 8 7 6 10 10 C 1.41408 * 120.20606 * 179.74284 * 9 8 7 11 11 H 1.07999 * 120.00228 * 155.37097 * 10 9 8 12 12 C 1.39934 * 119.99953 * 335.36535 * 10 9 8 13 13 N 1.30828 * 120.00071 * 342.27347 * 12 10 9 14 14 Si 1.86804 * 119.99952 * 162.27147 * 12 10 9 15 15 H 1.48499 * 109.46677 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47001 * 300.00186 * 14 12 10 17 17 H 1.48496 * 109.47051 * 60.00091 * 14 12 10 18 18 C 1.38276 * 119.95130 * 180.02562 * 5 4 3 19 19 C 1.53707 * 110.42882 * 237.77229 * 2 1 3 20 20 C 1.52940 * 112.48770 * 238.25446 * 19 2 1 21 21 C 1.55152 * 108.96460 * 30.09904 * 20 19 2 22 22 S 1.83389 * 110.34268 * 122.17167 * 2 1 3 23 23 H 1.08995 * 109.47046 * 60.70075 * 1 2 3 24 24 H 1.09000 * 109.46807 * 180.70255 * 1 2 3 25 25 H 1.09001 * 109.47067 * 300.69977 * 1 2 3 26 26 H 1.09005 * 109.46930 * 305.71715 * 3 2 1 27 27 H 1.08995 * 109.46696 * 185.71923 * 3 2 1 28 28 H 0.97001 * 119.99654 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.78787 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.83877 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.05168 * 180.27470 * 8 7 6 32 32 H 0.96998 * 120.00212 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.16613 * 359.97438 * 18 5 4 34 34 H 1.08994 * 108.89004 * 359.04502 * 19 2 1 35 35 H 1.08998 * 108.88973 * 117.46416 * 19 2 1 36 36 H 1.09000 * 109.60632 * 270.16951 * 20 19 2 37 37 H 1.09001 * 109.45766 * 149.94102 * 20 19 2 38 38 H 1.08993 * 111.13746 * 200.64685 * 21 20 19 39 39 H 1.09000 * 111.13000 * 76.46956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.6977 2.0901 1.2590 5 6 2.0761 3.4143 1.4918 6 6 2.7988 4.1114 0.5257 7 6 3.1787 5.4247 0.7461 8 6 2.8409 6.0582 1.9212 9 6 2.1159 5.3651 2.9085 10 6 1.7703 6.0075 4.1198 11 1 0.9185 5.6652 4.6887 12 6 2.5320 7.0867 4.5816 13 7 3.7353 7.2877 4.1091 14 14 1.8307 8.2404 5.8726 15 1 2.8282 9.2940 6.1890 16 1 0.5922 8.8724 5.3512 17 1 1.5141 7.4722 7.1033 18 6 1.7331 4.0314 2.6807 19 6 2.0666 -0.7681 -1.2185 20 6 2.9675 -1.9386 -0.8218 21 6 2.5081 -2.4841 0.5561 22 16 2.1676 -0.9156 1.4555 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8837 26 1 1.6243 1.9839 -0.8344 27 1 3.1460 1.4209 -0.1024 28 1 1.1949 1.6039 1.9311 29 1 3.0637 3.6246 -0.4012 30 1 3.7390 5.9560 -0.0090 31 1 3.1356 7.0839 2.0866 32 1 4.2632 8.0360 4.4289 33 1 1.1727 3.4923 3.4301 34 1 1.2235 -1.1510 -1.7935 35 1 2.6354 -0.0819 -1.8458 36 1 4.0008 -1.5983 -0.7543 37 1 2.8903 -2.7264 -1.5712 38 1 3.3041 -3.0498 1.0401 39 1 1.6043 -3.0856 0.4591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313442257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:01 Heat of formation + Delta-G solvation = 7.468337 kcal Electronic energy + Delta-G solvation = -18806.961819 eV Core-core repulsion = 16032.420199 eV Total energy + Delta-G solvation = -2774.541619 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.26310 -37.11176 -34.81032 -33.23740 -31.60670 -29.69650 -27.92713 -27.16678 -25.25313 -24.93454 -22.44463 -20.95727 -20.08395 -19.91329 -17.26256 -16.54147 -15.86588 -15.43391 -15.09485 -14.55928 -14.40165 -14.22065 -13.98906 -13.56450 -13.08508 -12.87637 -12.63905 -12.51695 -12.06767 -11.97732 -11.76345 -11.48039 -11.19255 -11.16494 -11.03484 -10.94491 -10.80525 -10.50197 -10.38337 -9.81839 -9.71075 -9.25907 -9.14028 -8.66368 -7.68923 -7.32265 -6.65391 -6.14149 -4.25127 1.73405 2.27207 2.92287 3.12722 3.16044 3.28760 3.43699 4.01117 4.12315 4.40991 4.47337 4.64424 4.77604 4.80762 4.95027 5.01091 5.28900 5.36788 5.50707 5.61681 5.68393 5.74323 5.79560 5.86450 5.93633 6.00875 6.12585 6.37678 6.59756 7.09983 7.10688 7.17660 7.40193 7.45800 7.84224 7.97622 8.20063 8.30798 8.57127 8.68596 8.84924 9.06177 9.18224 10.30873 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033995 B = 0.003653 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.442066 B = 7662.765966 C = 7965.106803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.023 4.023 3 C 0.161 3.839 4 N -0.757 5.757 5 C 0.227 3.773 6 C -0.302 4.302 7 C -0.075 4.075 8 C -0.200 4.200 9 C 0.142 3.858 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.793 5.793 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.288 4.288 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.079 4.079 22 S -0.269 6.269 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.389 0.611 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.279 0.721 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -14.937 -9.245 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 C 0.034 3.966 4 N -0.392 5.392 5 C 0.129 3.871 6 C -0.325 4.325 7 C -0.094 4.094 8 C -0.220 4.220 9 C 0.139 3.861 10 C -0.495 4.495 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.418 5.418 14 Si 0.730 3.270 15 H -0.204 1.204 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.312 4.312 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.227 4.227 22 S -0.041 6.041 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.374 -14.487 -8.219 16.825 hybrid contribution -0.480 -0.030 -0.289 0.562 sum -2.854 -14.518 -8.508 17.067 Atomic orbital electron populations 1.22009 0.91760 1.02110 1.03048 1.23538 0.98677 0.97581 0.93510 1.21057 0.99034 0.87807 0.88673 1.44387 1.64667 1.11772 1.18332 1.17438 0.93461 0.82417 0.93828 1.19828 1.15538 0.97049 1.00072 1.20426 0.98378 0.93995 0.96612 1.21162 1.06975 1.00419 0.93435 1.17320 0.87739 0.89265 0.91745 1.19519 1.12016 1.12265 1.05746 0.90717 1.25881 0.93812 0.97245 0.96995 1.69856 1.07512 1.26445 1.37981 0.86420 0.79757 0.79834 0.80961 1.20432 1.18906 1.19106 1.20392 1.16795 0.96418 0.97608 1.22099 1.00104 0.96943 0.96964 1.22360 1.00823 0.97298 0.95691 1.24330 1.04163 0.97115 0.97122 1.88228 1.85009 1.12126 1.18761 0.91636 0.92216 0.91295 0.92286 0.92361 0.77723 0.89849 0.89728 0.86820 0.91036 0.89410 0.90748 0.89927 0.90325 0.90368 0.87882 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.26 37.16 0.31 -1.12 16 2 C -0.02 -0.27 0.84 -90.25 -0.08 -0.35 16 3 C 0.16 2.45 3.62 -4.04 -0.01 2.43 16 4 N -0.76 -14.25 5.19 -58.69 -0.30 -14.56 16 5 C 0.23 5.30 6.64 -83.86 -0.56 4.74 16 6 C -0.30 -7.05 9.32 -39.08 -0.36 -7.41 16 7 C -0.08 -1.85 10.02 -39.69 -0.40 -2.25 16 8 C -0.20 -5.44 8.69 -38.83 -0.34 -5.77 16 9 C 0.14 3.98 5.57 -106.85 -0.60 3.38 16 10 C -0.47 -12.90 9.05 -37.74 -0.34 -13.24 16 11 H 0.07 1.99 7.91 -52.49 -0.41 1.58 16 12 C 0.08 2.04 5.14 -17.34 -0.09 1.95 16 13 N -0.79 -21.28 10.96 55.55 0.61 -20.67 16 14 Si 0.91 19.30 29.60 -169.99 -5.03 14.27 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 C -0.29 -7.46 9.63 -38.68 -0.37 -7.84 16 19 C -0.12 -1.11 5.74 -26.39 -0.15 -1.26 16 20 C -0.12 -1.00 6.34 -25.62 -0.16 -1.16 16 21 C -0.08 -0.72 7.52 38.30 0.29 -0.43 16 22 S -0.27 -3.60 21.15 -107.50 -2.27 -5.87 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.86 7.28 -51.93 -0.38 0.48 16 26 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 27 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 28 H 0.39 7.13 7.11 -40.82 -0.29 6.84 16 29 H 0.08 1.74 6.70 -52.49 -0.35 1.39 16 30 H 0.08 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.11 3.18 6.16 -52.49 -0.32 2.86 16 32 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 33 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.07 0.57 7.62 -51.93 -0.40 0.18 16 35 H 0.08 0.73 7.62 -51.93 -0.40 0.33 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -29.42 324.16 -10.87 -40.29 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.89 Total: 9.99 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -2.86 Total: -28.33 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.30 Total: -35.23 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.27 Total: -5.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.42 -10.87 -40.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.760 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds