Wall clock time and date at job start Mon Mar 30 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 110.30228 * 2 1 4 4 N 1.46495 * 109.47212 * 65.71575 * 3 2 1 5 5 C 1.39678 * 120.00153 * 179.97438 * 4 3 2 6 6 C 1.39338 * 119.94890 * 0.02562 * 5 4 3 7 7 C 1.38482 * 120.42258 * 179.97438 * 6 5 4 8 8 C 1.37696 * 120.32248 * 359.71901 * 7 6 5 9 9 C 1.40743 * 119.89202 * 0.53800 * 8 7 6 10 10 C 1.41408 * 120.20606 * 179.74284 * 9 8 7 11 11 H 1.07999 * 120.00228 * 155.37097 * 10 9 8 12 12 C 1.39934 * 119.99953 * 335.36535 * 10 9 8 13 13 N 1.30828 * 120.00071 * 342.27347 * 12 10 9 14 14 Si 1.86804 * 119.99952 * 162.27147 * 12 10 9 15 15 H 1.48499 * 109.46677 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.47001 * 300.00186 * 14 12 10 17 17 H 1.48496 * 109.47051 * 60.00091 * 14 12 10 18 18 C 1.38276 * 119.95130 * 180.02562 * 5 4 3 19 19 C 1.53707 * 110.42882 * 237.77229 * 2 1 3 20 20 C 1.52940 * 112.48770 * 238.25446 * 19 2 1 21 21 C 1.55152 * 108.96460 * 30.09904 * 20 19 2 22 22 S 1.83389 * 110.34268 * 122.17167 * 2 1 3 23 23 H 1.08995 * 109.47046 * 60.70075 * 1 2 3 24 24 H 1.09000 * 109.46807 * 180.70255 * 1 2 3 25 25 H 1.09001 * 109.47067 * 300.69977 * 1 2 3 26 26 H 1.09005 * 109.46930 * 305.71715 * 3 2 1 27 27 H 1.08995 * 109.46696 * 185.71923 * 3 2 1 28 28 H 0.97001 * 119.99654 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.78787 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.83877 * 179.97438 * 7 6 5 31 31 H 1.07998 * 120.05168 * 180.27470 * 8 7 6 32 32 H 0.96998 * 120.00212 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.16613 * 359.97438 * 18 5 4 34 34 H 1.08994 * 108.89004 * 359.04502 * 19 2 1 35 35 H 1.08998 * 108.88973 * 117.46416 * 19 2 1 36 36 H 1.09000 * 109.60632 * 270.16951 * 20 19 2 37 37 H 1.09001 * 109.45766 * 149.94102 * 20 19 2 38 38 H 1.08993 * 111.13746 * 200.64685 * 21 20 19 39 39 H 1.09000 * 111.13000 * 76.46956 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.6977 2.0901 1.2590 5 6 2.0761 3.4143 1.4918 6 6 2.7988 4.1114 0.5257 7 6 3.1787 5.4247 0.7461 8 6 2.8409 6.0582 1.9212 9 6 2.1159 5.3651 2.9085 10 6 1.7703 6.0075 4.1198 11 1 0.9185 5.6652 4.6887 12 6 2.5320 7.0867 4.5816 13 7 3.7353 7.2877 4.1091 14 14 1.8307 8.2404 5.8726 15 1 2.8282 9.2940 6.1890 16 1 0.5922 8.8724 5.3512 17 1 1.5141 7.4722 7.1033 18 6 1.7331 4.0314 2.6807 19 6 2.0666 -0.7681 -1.2185 20 6 2.9675 -1.9386 -0.8218 21 6 2.5081 -2.4841 0.5561 22 16 2.1676 -0.9156 1.4555 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0126 25 1 -0.3633 0.5247 0.8837 26 1 1.6243 1.9839 -0.8344 27 1 3.1460 1.4209 -0.1024 28 1 1.1949 1.6039 1.9311 29 1 3.0637 3.6246 -0.4012 30 1 3.7390 5.9560 -0.0090 31 1 3.1356 7.0839 2.0866 32 1 4.2632 8.0360 4.4289 33 1 1.1727 3.4923 3.4301 34 1 1.2235 -1.1510 -1.7935 35 1 2.6354 -0.0819 -1.8458 36 1 4.0008 -1.5983 -0.7543 37 1 2.8903 -2.7264 -1.5712 38 1 3.3041 -3.0498 1.0401 39 1 1.6043 -3.0856 0.4591 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313442257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:00 Heat of formation + Delta-G solvation = -7.671577 kcal Electronic energy + Delta-G solvation = -18807.618335 eV Core-core repulsion = 16032.420199 eV Total energy + Delta-G solvation = -2775.198135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83148 -38.41905 -36.31974 -34.91571 -32.81748 -31.68546 -29.53189 -27.99829 -27.13759 -26.32902 -23.42406 -22.71509 -21.84726 -21.00290 -19.13982 -17.71715 -17.33762 -16.77660 -16.51750 -16.31129 -15.67376 -15.44232 -15.23291 -14.63748 -14.54429 -14.29289 -13.96217 -13.86040 -13.52327 -13.47060 -13.08004 -12.81264 -12.73399 -12.45396 -12.33691 -12.17236 -12.04076 -11.94511 -11.65218 -11.51854 -11.22093 -11.06645 -10.73478 -10.42694 -9.34288 -8.72656 -8.61096 -7.94909 -6.33249 0.83065 1.05298 1.34011 1.38391 1.44248 1.50224 1.60706 2.22691 2.76471 2.80342 3.55150 3.58416 3.79893 3.85692 4.00484 4.13877 4.33624 4.48686 4.56603 4.60852 4.66237 4.72105 4.73986 4.80810 4.89124 5.00808 5.04444 5.11780 5.16080 5.19259 5.23770 5.24359 5.40774 5.57255 5.92980 6.01898 6.19461 6.30369 6.61771 6.88421 6.98472 7.02380 7.21595 8.37353 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033995 B = 0.003653 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.442066 B = 7662.765966 C = 7965.106803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.006 4.006 3 C 0.156 3.844 4 N -0.748 5.748 5 C 0.235 3.765 6 C -0.302 4.302 7 C -0.073 4.073 8 C -0.232 4.232 9 C 0.115 3.885 10 C -0.506 4.506 11 H 0.070 0.930 12 C 0.037 3.963 13 N -0.823 5.823 14 Si 0.983 3.017 15 H -0.265 1.265 16 H -0.260 1.260 17 H -0.261 1.261 18 C -0.315 4.315 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.057 4.057 22 S -0.359 6.359 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.390 0.610 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.287 0.713 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -16.459 -10.942 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C 0.031 3.969 4 N -0.380 5.380 5 C 0.134 3.866 6 C -0.325 4.325 7 C -0.092 4.092 8 C -0.253 4.253 9 C 0.112 3.888 10 C -0.536 4.536 11 H 0.088 0.912 12 C -0.178 4.178 13 N -0.449 5.449 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.184 1.184 17 H -0.185 1.185 18 C -0.339 4.339 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.205 4.205 22 S -0.132 6.132 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.225 0.775 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.668 -16.060 -9.944 19.077 hybrid contribution -0.358 0.271 0.134 0.468 sum -3.026 -15.789 -9.810 18.833 Atomic orbital electron populations 1.21995 0.90990 1.03115 1.02580 1.23487 0.99039 0.95365 0.93657 1.21275 0.98805 0.89928 0.86912 1.44484 1.63605 1.10168 1.19789 1.17528 0.92167 0.84123 0.92792 1.20137 1.14741 0.96632 1.01029 1.20738 0.97650 0.94669 0.96172 1.21101 1.09171 1.00126 0.94863 1.17679 0.88479 0.90295 0.92381 1.19788 1.12890 1.14369 1.06520 0.91167 1.26767 0.93716 0.98152 0.99185 1.69912 1.08570 1.27144 1.39275 0.85258 0.79124 0.77483 0.77811 1.18905 1.18437 1.18513 1.20487 1.18119 0.96329 0.99006 1.22148 1.01202 0.97115 0.95538 1.22368 1.00027 0.97710 0.95691 1.24447 1.05224 0.94276 0.96553 1.88550 1.85607 1.16715 1.22298 0.90283 0.90474 0.93531 0.91246 0.93138 0.77530 0.86855 0.87160 0.88470 0.90207 0.89907 0.88431 0.89432 0.91125 0.87254 0.87064 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.26 71.98 0.59 -1.94 16 2 C -0.01 -0.12 0.84 -10.55 -0.01 -0.13 16 3 C 0.16 4.50 3.62 86.38 0.31 4.81 16 4 N -0.75 -28.03 5.19 -339.59 -1.76 -29.79 16 5 C 0.24 11.06 6.64 38.16 0.25 11.31 16 6 C -0.30 -13.89 9.32 22.59 0.21 -13.68 16 7 C -0.07 -3.63 10.02 22.20 0.22 -3.40 16 8 C -0.23 -13.08 8.69 22.75 0.20 -12.88 16 9 C 0.11 6.69 5.57 -21.31 -0.12 6.58 16 10 C -0.51 -29.33 9.05 23.46 0.21 -29.12 16 11 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 12 C 0.04 1.96 5.14 85.25 0.44 2.40 16 13 N -0.82 -45.46 10.96 21.82 0.24 -45.22 16 14 Si 0.98 40.21 29.60 68.60 2.03 42.24 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 C -0.32 -16.98 9.63 22.86 0.22 -16.76 16 19 C -0.12 -1.76 5.74 30.81 0.18 -1.58 16 20 C -0.12 -1.50 6.34 31.31 0.20 -1.30 16 21 C -0.06 -0.88 7.52 72.72 0.55 -0.33 16 22 S -0.36 -9.31 21.15 -56.49 -1.19 -10.50 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.13 7.28 -2.39 -0.02 1.11 16 26 H 0.07 1.89 7.94 -2.38 -0.02 1.87 16 27 H 0.05 1.55 7.94 -2.39 -0.02 1.54 16 28 H 0.39 14.55 7.11 -92.71 -0.66 13.89 16 29 H 0.11 4.47 6.70 -2.91 -0.02 4.45 16 30 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 32 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 33 H 0.08 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.10 1.02 7.62 -2.39 -0.02 1.00 16 35 H 0.09 1.23 7.62 -2.39 -0.02 1.21 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -66.77 324.16 3.15 -63.63 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.38 Total: 35.67 kcal Atomic # 6 Polarization: -59.48 SS G_CDS: 3.46 Total: -56.03 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.52 Total: -75.01 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.19 Total: -10.50 kcal Total: -66.77 3.15 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313442257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.954 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds