Wall clock time and date at job start Mon Mar 30 2020 08:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81401 * 103.00166 * 2 1 4 4 H 1.09000 * 110.87247 * 57.38934 * 3 2 1 5 5 C 1.55146 * 110.98769 * 293.54700 * 3 2 1 6 6 C 1.54319 * 103.01551 * 206.21805 * 5 3 2 7 7 N 1.47437 * 107.23615 * 22.28293 * 6 5 3 8 8 C 1.46898 * 111.00091 * 123.26179 * 7 6 5 9 9 H 1.09004 * 109.46977 * 298.09937 * 8 7 6 10 10 C 1.50694 * 109.47269 * 58.09754 * 8 7 6 11 11 H 1.08001 * 119.99776 * 55.45827 * 10 8 7 12 12 C 1.37872 * 120.00369 * 235.72611 * 10 8 7 13 13 N 1.31514 * 120.00464 * 176.59121 * 12 10 8 14 14 Si 1.86805 * 120.00062 * 356.59671 * 12 10 8 15 15 H 1.48498 * 109.47130 * 85.25584 * 14 12 10 16 16 H 1.48500 * 109.47249 * 205.25664 * 14 12 10 17 17 H 1.48505 * 109.46784 * 325.25528 * 14 12 10 18 18 C 1.50699 * 109.47605 * 178.10375 * 8 7 6 19 19 C 1.38239 * 119.99993 * 313.60364 * 18 8 7 20 20 C 1.38230 * 120.00125 * 179.76723 * 19 18 8 21 21 C 1.38232 * 120.00051 * 0.47429 * 20 19 18 22 22 C 1.38240 * 120.00105 * 359.79922 * 21 20 19 23 23 C 1.38236 * 119.99780 * 359.95151 * 22 21 20 24 24 C 1.47849 * 108.56672 * 0.99172 * 7 6 5 25 25 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46684 * 299.99602 * 1 2 3 27 27 H 1.09003 * 109.46939 * 60.00015 * 1 2 3 28 28 H 1.08996 * 110.70355 * 87.83892 * 5 3 2 29 29 H 1.08998 * 110.70882 * 324.59868 * 5 3 2 30 30 H 1.09011 * 109.88768 * 262.88017 * 6 5 3 31 31 H 1.08998 * 110.02583 * 141.76961 * 6 5 3 32 32 H 0.97001 * 120.00696 * 180.02562 * 13 12 10 33 33 H 1.08006 * 119.99375 * 359.97438 * 19 18 8 34 34 H 1.08000 * 119.99769 * 180.25373 * 20 19 18 35 35 H 1.07999 * 120.00274 * 179.76842 * 21 20 19 36 36 H 1.07998 * 120.00267 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.99801 * 180.02562 * 23 22 21 38 38 H 1.08995 * 110.37356 * 94.73383 * 24 7 6 39 39 H 1.08999 * 110.37267 * 217.07079 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7747 2.2694 0.8579 5 6 1.7833 2.4391 -1.3279 6 6 2.7497 3.6363 -1.4479 7 7 3.9356 3.3241 -0.6294 8 6 5.1618 3.3805 -1.4363 9 1 5.1109 2.6323 -2.2274 10 6 5.2976 4.7506 -2.0487 11 1 5.2890 5.6273 -1.4180 12 6 5.4273 4.8854 -3.4147 13 7 5.4784 6.0832 -3.9555 14 14 5.5304 3.3667 -4.4976 15 1 4.1598 2.8967 -4.8227 16 1 6.2496 3.7017 -5.7529 17 1 6.2638 2.2946 -3.7779 18 6 6.3545 3.1023 -0.5580 19 6 6.4741 3.7343 0.6656 20 6 7.5656 3.4756 1.4733 21 6 8.5424 2.5923 1.0532 22 6 8.4257 1.9646 -0.1729 23 6 7.3315 2.2194 -0.9784 24 6 3.7556 1.9837 -0.0319 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7508 2.7823 -1.2633 29 1 1.9114 1.7549 -2.1667 30 1 2.2686 4.5401 -1.0739 31 1 3.0434 3.7760 -2.4882 32 1 5.5692 6.1781 -4.9165 33 1 5.7130 4.4277 0.9919 34 1 7.6570 3.9663 2.4311 35 1 9.3971 2.3930 1.6827 36 1 9.1890 1.2748 -0.5013 37 1 7.2401 1.7287 -1.9361 38 1 4.2331 1.2248 -0.6516 39 1 4.1632 1.9610 0.9788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382919165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:43:55 Heat of formation + Delta-G solvation = 31.840776 kcal Electronic energy + Delta-G solvation = -19726.896468 eV Core-core repulsion = 16953.411717 eV Total energy + Delta-G solvation = -2773.484751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.09899 -37.66987 -33.67718 -31.84351 -30.19273 -29.61989 -28.93612 -28.32841 -26.58097 -23.01375 -21.89860 -21.16869 -20.63564 -19.34162 -17.06707 -16.57101 -16.05931 -15.58734 -14.92072 -14.68140 -14.24597 -13.88059 -13.61462 -13.36902 -13.07604 -12.91580 -12.87311 -12.70789 -12.25220 -11.99583 -11.97307 -11.63345 -11.44499 -11.06410 -10.84136 -10.77465 -10.47935 -10.34380 -9.96780 -9.86549 -9.74987 -9.50929 -8.75154 -8.20521 -7.84644 -7.63678 -7.41121 -6.25052 -4.24192 1.73527 2.11158 2.16068 2.62719 3.14263 3.23728 3.25318 4.23820 4.49307 4.72023 4.88992 4.96017 5.06877 5.08838 5.21219 5.34534 5.54076 5.59820 5.61251 5.69739 5.72250 5.80406 5.98034 6.01687 6.16912 6.22563 6.28217 6.31557 6.48016 6.64331 6.70119 6.78579 6.83072 7.14114 7.17967 7.32578 7.49402 7.76561 7.91627 7.94087 8.46490 8.87287 9.36197 10.86856 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.007745 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.521817 B = 3614.351730 C = 4913.837875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.264 6.264 3 C -0.061 4.061 4 H 0.096 0.904 5 C -0.139 4.139 6 C 0.061 3.939 7 N -0.514 5.514 8 C 0.207 3.793 9 H 0.018 0.982 10 C -0.490 4.490 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.885 5.885 14 Si 0.865 3.135 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.263 1.263 18 C -0.032 4.032 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.125 4.125 23 C -0.134 4.134 24 C 0.065 3.935 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.267 0.733 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 -9.552 7.278 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.037 6.037 3 C -0.190 4.190 4 H 0.115 0.885 5 C -0.179 4.179 6 C -0.068 4.068 7 N -0.239 5.239 8 C 0.101 3.899 9 H 0.036 0.964 10 C -0.529 4.529 11 H 0.102 0.898 12 C -0.126 4.126 13 N -0.521 5.521 14 Si 0.692 3.308 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.033 4.033 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.165 4.165 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.063 4.063 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.466 -9.957 7.492 13.237 hybrid contribution -0.744 -0.280 -1.406 1.616 sum -5.210 -10.237 6.085 12.999 Atomic orbital electron populations 1.23324 0.94762 1.05939 1.04812 1.86783 1.06847 1.12154 1.97922 1.24443 1.01260 0.91941 1.01366 0.88544 1.23232 1.00193 0.98829 0.95676 1.22520 0.89527 0.95794 0.98943 1.64021 1.03020 1.22906 1.33949 1.19009 0.84226 0.97586 0.89047 0.96445 1.20768 1.49443 0.90721 0.91918 0.89764 1.25065 0.94243 0.95566 0.97765 1.69865 1.48601 1.21786 1.11878 0.87078 0.78967 0.84199 0.80549 1.19962 1.21092 1.18788 1.20299 0.96871 0.92283 0.93815 1.20969 0.97327 0.99014 0.93911 1.21068 0.95102 0.98969 0.99588 1.20869 0.99259 0.99470 0.96907 1.20920 0.97864 1.00506 0.95034 1.21057 0.95199 0.99521 0.99504 1.22807 0.90453 0.92190 1.00899 0.88535 0.90714 0.90581 0.91287 0.90893 0.91033 0.91182 0.92279 0.85749 0.87193 0.87413 0.87317 0.87204 0.93616 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.64 101.05 1.08 -0.13 16 2 S -0.26 -3.68 21.84 -107.50 -2.35 -6.03 16 3 C -0.06 -0.91 3.56 -24.59 -0.09 -1.00 16 4 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 5 C -0.14 -2.14 6.31 -24.90 -0.16 -2.30 16 6 C 0.06 1.16 6.27 -2.84 -0.02 1.15 16 7 N -0.51 -10.27 4.53 -226.08 -1.02 -11.29 16 8 C 0.21 4.69 1.24 -70.02 -0.09 4.60 16 9 H 0.02 0.42 4.44 -51.93 -0.23 0.19 16 10 C -0.49 -12.93 7.68 -34.44 -0.26 -13.20 16 11 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 12 C 0.08 2.12 5.28 -17.82 -0.09 2.02 16 13 N -0.88 -25.66 13.96 55.43 0.77 -24.88 16 14 Si 0.86 20.58 26.64 -169.99 -4.53 16.05 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.26 -6.04 5.80 56.52 0.33 -5.71 16 18 C -0.03 -0.67 4.05 -104.62 -0.42 -1.10 16 19 C -0.09 -1.85 9.18 -39.58 -0.36 -2.22 16 20 C -0.13 -2.22 10.05 -39.59 -0.40 -2.62 16 21 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 22 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.13 -2.70 9.67 -39.58 -0.38 -3.09 16 24 C 0.07 1.15 5.31 -2.30 -0.01 1.14 16 25 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 30 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 31 H 0.07 1.52 6.45 -51.93 -0.33 1.19 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.12 2.48 7.92 -52.48 -0.42 2.06 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 2.22 7.09 -52.49 -0.37 1.84 16 38 H 0.05 0.86 7.65 -51.93 -0.40 0.47 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -28.04 325.42 -10.26 -38.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.03 Total: 5.07 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.01 Total: -22.12 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.25 Total: -36.18 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.53 Total: 16.05 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.35 Total: -6.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.04 -10.26 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382919165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.138 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds