Wall clock time and date at job start Mon Mar 30 2020 08:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81401 * 103.00166 * 2 1 4 4 H 1.09000 * 110.87247 * 57.38934 * 3 2 1 5 5 C 1.55146 * 110.98769 * 293.54700 * 3 2 1 6 6 C 1.54319 * 103.01551 * 206.21805 * 5 3 2 7 7 N 1.47437 * 107.23615 * 22.28293 * 6 5 3 8 8 C 1.46898 * 111.00091 * 123.26179 * 7 6 5 9 9 H 1.09004 * 109.46977 * 298.09937 * 8 7 6 10 10 C 1.50694 * 109.47269 * 58.09754 * 8 7 6 11 11 H 1.08001 * 119.99776 * 55.45827 * 10 8 7 12 12 C 1.37872 * 120.00369 * 235.72611 * 10 8 7 13 13 N 1.31514 * 120.00464 * 176.59121 * 12 10 8 14 14 Si 1.86805 * 120.00062 * 356.59671 * 12 10 8 15 15 H 1.48498 * 109.47130 * 85.25584 * 14 12 10 16 16 H 1.48500 * 109.47249 * 205.25664 * 14 12 10 17 17 H 1.48505 * 109.46784 * 325.25528 * 14 12 10 18 18 C 1.50699 * 109.47605 * 178.10375 * 8 7 6 19 19 C 1.38239 * 119.99993 * 313.60364 * 18 8 7 20 20 C 1.38230 * 120.00125 * 179.76723 * 19 18 8 21 21 C 1.38232 * 120.00051 * 0.47429 * 20 19 18 22 22 C 1.38240 * 120.00105 * 359.79922 * 21 20 19 23 23 C 1.38236 * 119.99780 * 359.95151 * 22 21 20 24 24 C 1.47849 * 108.56672 * 0.99172 * 7 6 5 25 25 H 1.09005 * 109.47126 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46684 * 299.99602 * 1 2 3 27 27 H 1.09003 * 109.46939 * 60.00015 * 1 2 3 28 28 H 1.08996 * 110.70355 * 87.83892 * 5 3 2 29 29 H 1.08998 * 110.70882 * 324.59868 * 5 3 2 30 30 H 1.09011 * 109.88768 * 262.88017 * 6 5 3 31 31 H 1.08998 * 110.02583 * 141.76961 * 6 5 3 32 32 H 0.97001 * 120.00696 * 180.02562 * 13 12 10 33 33 H 1.08006 * 119.99375 * 359.97438 * 19 18 8 34 34 H 1.08000 * 119.99769 * 180.25373 * 20 19 18 35 35 H 1.07999 * 120.00274 * 179.76842 * 21 20 19 36 36 H 1.07998 * 120.00267 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.99801 * 180.02562 * 23 22 21 38 38 H 1.08995 * 110.37356 * 94.73383 * 24 7 6 39 39 H 1.08999 * 110.37267 * 217.07079 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7747 2.2694 0.8579 5 6 1.7833 2.4391 -1.3279 6 6 2.7497 3.6363 -1.4479 7 7 3.9356 3.3241 -0.6294 8 6 5.1618 3.3805 -1.4363 9 1 5.1109 2.6323 -2.2274 10 6 5.2976 4.7506 -2.0487 11 1 5.2890 5.6273 -1.4180 12 6 5.4273 4.8854 -3.4147 13 7 5.4784 6.0832 -3.9555 14 14 5.5304 3.3667 -4.4976 15 1 4.1598 2.8967 -4.8227 16 1 6.2496 3.7017 -5.7529 17 1 6.2638 2.2946 -3.7779 18 6 6.3545 3.1023 -0.5580 19 6 6.4741 3.7343 0.6656 20 6 7.5656 3.4756 1.4733 21 6 8.5424 2.5923 1.0532 22 6 8.4257 1.9646 -0.1729 23 6 7.3315 2.2194 -0.9784 24 6 3.7556 1.9837 -0.0319 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7508 2.7823 -1.2633 29 1 1.9114 1.7549 -2.1667 30 1 2.2686 4.5401 -1.0739 31 1 3.0434 3.7760 -2.4882 32 1 5.5692 6.1781 -4.9165 33 1 5.7130 4.4277 0.9919 34 1 7.6570 3.9663 2.4311 35 1 9.3971 2.3930 1.6827 36 1 9.1890 1.2748 -0.5013 37 1 7.2401 1.7287 -1.9361 38 1 4.2331 1.2248 -0.6516 39 1 4.1632 1.9610 0.9788 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382919165.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:43:54 Heat of formation + Delta-G solvation = 16.191356 kcal Electronic energy + Delta-G solvation = -19727.575078 eV Core-core repulsion = 16953.411717 eV Total energy + Delta-G solvation = -2774.163361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.62898 -39.10601 -35.44337 -33.67872 -31.63371 -30.98956 -30.11915 -29.50095 -28.36291 -24.74064 -23.35650 -22.57593 -22.03092 -20.98415 -19.07698 -17.94219 -17.45802 -16.96600 -16.43300 -16.23261 -15.81749 -15.19826 -14.83016 -14.75509 -14.49288 -14.31783 -14.21123 -14.14826 -13.81321 -13.52722 -13.32650 -13.02370 -12.96811 -12.72697 -12.39439 -12.12102 -12.00407 -11.91035 -11.76290 -11.52608 -11.38293 -10.84727 -10.79701 -9.65188 -9.36607 -9.04631 -8.71196 -8.36536 -6.38569 0.64461 0.67039 0.72291 1.22331 1.26189 1.33635 1.62542 2.22904 2.87053 3.15427 3.35340 3.54523 3.65569 4.04628 4.16222 4.26059 4.30621 4.33521 4.35718 4.37695 4.43234 4.47293 4.57255 4.74683 4.75653 4.84781 4.89766 4.91628 4.95627 5.07245 5.22862 5.25145 5.34516 5.44034 5.72345 5.76177 5.96267 6.07540 6.23793 6.34755 6.57649 6.69579 7.25749 8.79599 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.007745 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.521817 B = 3614.351730 C = 4913.837875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.294 6.294 3 C -0.049 4.049 4 H 0.110 0.890 5 C -0.126 4.126 6 C 0.057 3.943 7 N -0.521 5.521 8 C 0.218 3.782 9 H 0.005 0.995 10 C -0.483 4.483 11 H 0.040 0.960 12 C 0.029 3.971 13 N -0.934 5.934 14 Si 0.918 3.082 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.252 1.252 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.155 4.155 24 C 0.071 3.929 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.268 0.732 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.031 0.969 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -12.006 8.907 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.068 6.068 3 C -0.178 4.178 4 H 0.128 0.872 5 C -0.166 4.166 6 C -0.072 4.072 7 N -0.246 5.246 8 C 0.111 3.889 9 H 0.023 0.977 10 C -0.522 4.522 11 H 0.058 0.942 12 C -0.171 4.171 13 N -0.574 5.574 14 Si 0.743 3.257 15 H -0.190 1.190 16 H -0.210 1.210 17 H -0.176 1.176 18 C -0.061 4.061 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.140 4.140 23 C -0.174 4.174 24 C -0.058 4.058 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.120 0.880 38 H 0.049 0.951 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.601 -12.427 9.141 16.099 hybrid contribution -0.710 0.473 -1.748 1.945 sum -5.311 -11.954 7.393 15.026 Atomic orbital electron populations 1.23430 0.90777 1.07516 1.05922 1.86915 1.11164 1.10672 1.98003 1.24241 0.99029 0.93197 1.01372 0.87227 1.23133 1.00698 0.96912 0.95869 1.22516 0.90225 0.97707 0.96734 1.63824 1.02457 1.24859 1.33478 1.18749 0.86128 0.94639 0.89399 0.97704 1.20809 1.48455 0.91379 0.91566 0.94192 1.25719 0.94250 0.98026 0.99067 1.69997 1.51281 1.23926 1.12173 0.86199 0.79476 0.81221 0.78768 1.18987 1.20953 1.17608 1.20237 0.96797 0.94291 0.94764 1.20968 0.98491 0.99248 0.94158 1.21420 0.93992 0.98691 1.00231 1.21345 0.99758 0.97699 0.96663 1.21293 0.97315 1.00514 0.94920 1.21164 0.96230 1.00021 0.99962 1.22716 0.92723 0.90147 1.00172 0.86711 0.89242 0.89831 0.88326 0.91430 0.91234 0.94461 0.92305 0.87110 0.84140 0.83348 0.84188 0.87999 0.95082 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.64 113.37 1.21 -0.58 16 2 S -0.29 -7.57 21.84 -56.49 -1.23 -8.80 16 3 C -0.05 -1.39 3.56 31.98 0.11 -1.28 16 4 H 0.11 2.83 8.14 -2.39 -0.02 2.82 16 5 C -0.13 -3.73 6.31 31.78 0.20 -3.53 16 6 C 0.06 2.23 6.27 86.65 0.54 2.78 16 7 N -0.52 -21.45 4.53 -869.18 -3.93 -25.38 16 8 C 0.22 10.22 1.24 43.42 0.05 10.27 16 9 H 0.01 0.26 4.44 -2.38 -0.01 0.25 16 10 C -0.48 -26.99 7.68 25.60 0.20 -26.79 16 11 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 12 C 0.03 1.64 5.28 84.65 0.45 2.08 16 13 N -0.93 -56.96 13.96 21.45 0.30 -56.66 16 14 Si 0.92 43.79 26.64 68.60 1.83 45.62 16 15 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.25 -11.43 5.80 99.48 0.58 -10.85 16 18 C -0.06 -2.60 4.05 -19.86 -0.08 -2.68 16 19 C -0.11 -4.36 9.18 22.27 0.20 -4.16 16 20 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 21 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16 22 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 23 C -0.16 -6.17 9.67 22.27 0.22 -5.96 16 24 C 0.07 2.49 5.31 86.77 0.46 2.95 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.09 8.03 -2.39 -0.02 2.07 16 30 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.04 1.68 6.45 -2.39 -0.02 1.67 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.11 4.58 7.92 -2.91 -0.02 4.55 16 34 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.10 4.11 7.09 -2.91 -0.02 4.09 16 38 H 0.03 1.18 7.65 -2.39 -0.02 1.16 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -64.63 325.42 2.08 -62.56 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.88 Total: 20.84 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 4.23 Total: -38.18 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.63 Total: -82.04 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.83 Total: 45.62 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.23 Total: -8.80 kcal Total: -64.63 2.08 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382919165.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.749 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds