Wall clock time and date at job start Mon Mar 30 2020 08:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 110.38872 * 2 1 4 4 C 1.53712 * 110.34336 * 237.77549 * 2 1 3 5 5 C 1.52941 * 112.48938 * 243.95526 * 4 2 1 6 6 H 1.08991 * 109.60577 * 89.82814 * 5 4 2 7 7 N 1.46907 * 109.60168 * 209.96595 * 5 4 2 8 8 C 1.46897 * 111.00135 * 204.99881 * 7 5 4 9 9 H 1.08996 * 109.46743 * 325.00253 * 8 7 5 10 10 C 1.50703 * 109.46967 * 84.99890 * 8 7 5 11 11 H 1.08001 * 119.99969 * 234.57837 * 10 8 7 12 12 C 1.37873 * 120.00015 * 54.57544 * 10 8 7 13 13 N 1.31516 * 120.00145 * 350.51555 * 12 10 8 14 14 Si 1.86800 * 120.00082 * 170.51082 * 12 10 8 15 15 H 1.48497 * 109.47129 * 90.00314 * 14 12 10 16 16 H 1.48500 * 109.47175 * 210.00488 * 14 12 10 17 17 H 1.48500 * 109.47059 * 330.00106 * 14 12 10 18 18 C 1.50693 * 109.47326 * 205.00054 * 8 7 5 19 19 C 1.38232 * 120.00273 * 150.99488 * 18 8 7 20 20 C 1.38230 * 120.00208 * 179.74269 * 19 18 8 21 21 C 1.38240 * 120.00187 * 0.53331 * 20 19 18 22 22 C 1.38237 * 119.99343 * 359.74586 * 21 20 19 23 23 C 1.38237 * 120.00456 * 359.97438 * 22 21 20 24 24 C 1.55154 * 108.96187 * 329.89446 * 5 4 2 25 25 S 1.83394 * 110.34311 * 122.22859 * 2 1 3 26 26 H 1.08995 * 109.47290 * 182.21967 * 1 2 3 27 27 H 1.08997 * 109.46876 * 302.22757 * 1 2 3 28 28 H 1.09006 * 109.46857 * 62.22820 * 1 2 3 29 29 H 1.09002 * 108.88340 * 4.74800 * 4 2 1 30 30 H 1.09000 * 108.89016 * 123.15925 * 4 2 1 31 31 H 1.00906 * 110.99888 * 81.04224 * 7 5 4 32 32 H 0.96996 * 120.00478 * 179.97438 * 13 12 10 33 33 H 1.08004 * 119.99779 * 359.97438 * 19 18 8 34 34 H 1.07999 * 120.00418 * 180.29732 * 20 19 18 35 35 H 1.07998 * 120.00224 * 179.76757 * 21 20 19 36 36 H 1.08004 * 119.99474 * 180.02562 * 22 21 20 37 37 H 1.07998 * 119.99727 * 180.02562 * 23 22 21 38 38 H 1.09007 * 111.13254 * 283.53158 * 24 5 4 39 39 H 1.08999 * 111.17011 * 159.36771 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0643 -0.7685 -1.2192 5 6 2.8494 -2.0200 -0.8238 6 1 2.1718 -2.8711 -0.7572 7 7 3.8811 -2.2941 -1.8332 8 6 4.2417 -3.7180 -1.8443 9 1 4.1966 -4.1121 -0.8290 10 6 3.2758 -4.4740 -2.7199 11 1 2.7415 -5.3253 -2.3248 12 6 3.0744 -4.0788 -4.0253 13 7 3.5758 -2.9405 -4.4526 14 14 2.0892 -5.1600 -5.1871 15 1 0.6539 -4.7862 -5.1139 16 1 2.5800 -4.9702 -6.5758 17 1 2.2507 -6.5833 -4.7953 18 6 5.6397 -3.8780 -2.3836 19 6 6.4232 -4.9388 -1.9693 20 6 7.7037 -5.0885 -2.4680 21 6 8.2047 -4.1713 -3.3729 22 6 7.4232 -3.1073 -3.7828 23 6 6.1406 -2.9608 -3.2884 24 6 3.5204 -1.7798 0.5543 25 16 2.1675 -0.9170 1.4546 26 1 -0.3633 -1.0268 0.0398 27 1 -0.3633 0.5480 0.8693 28 1 -0.3633 0.4789 -0.9093 29 1 1.2232 -1.0632 -1.8469 30 1 2.7159 -0.1100 -1.7936 31 1 4.6948 -1.7161 -1.6847 32 1 3.4344 -2.6626 -5.3711 33 1 6.0336 -5.6527 -1.2586 34 1 8.3141 -5.9199 -2.1480 35 1 9.2065 -4.2862 -3.7597 36 1 7.8144 -2.3909 -4.4901 37 1 5.5300 -2.1297 -3.6091 38 1 4.3982 -1.1406 0.4580 39 1 3.7752 -2.7228 1.0379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397721317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:30 Heat of formation + Delta-G solvation = 27.907146 kcal Electronic energy + Delta-G solvation = -19695.332197 eV Core-core repulsion = 16921.676871 eV Total energy + Delta-G solvation = -2773.655326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.50080 -36.89442 -34.33163 -32.27105 -30.78950 -29.91310 -28.39409 -26.26616 -26.06933 -23.06301 -22.06692 -21.38104 -19.98953 -19.54003 -16.50596 -16.15239 -15.93741 -15.07177 -14.78240 -14.46551 -13.98788 -13.88243 -13.58459 -13.18521 -12.88211 -12.64707 -12.52752 -12.29379 -11.86055 -11.69336 -11.56281 -11.33702 -11.01273 -10.94593 -10.79745 -10.69176 -10.30587 -10.14758 -9.99636 -9.82222 -9.50909 -9.33439 -8.51160 -7.94834 -7.58134 -7.48546 -6.95118 -5.89831 -4.07532 2.17758 2.35133 2.43942 2.67222 3.28730 3.36377 3.40593 4.42246 4.80369 4.89377 5.07426 5.17948 5.30914 5.35589 5.50292 5.65921 5.71421 5.74818 5.81770 5.89440 5.94273 6.00152 6.11569 6.18231 6.26766 6.31390 6.50925 6.60269 6.71384 6.76960 6.86747 6.98312 7.12622 7.36985 7.52481 7.79263 7.83095 8.04612 8.15000 8.31827 8.69475 9.00107 9.59209 11.04630 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.006682 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.959792 B = 4189.307721 C = 5354.136219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 H 0.088 0.912 4 C -0.110 4.110 5 C 0.102 3.898 6 H 0.091 0.909 7 N -0.627 5.627 8 C 0.251 3.749 9 H 0.003 0.997 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.093 3.907 13 N -0.826 5.826 14 Si 0.875 3.125 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.041 4.041 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.080 4.080 24 C -0.093 4.093 25 S -0.324 6.324 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.310 0.690 32 H 0.254 0.746 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.082 0.918 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 4.440 5.120 6.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 H 0.106 0.894 4 C -0.150 4.150 5 C -0.011 4.011 6 H 0.109 0.891 7 N -0.257 5.257 8 C 0.144 3.856 9 H 0.021 0.979 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.116 4.116 13 N -0.459 5.459 14 Si 0.703 3.297 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.042 4.042 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.099 4.099 24 C -0.244 4.244 25 S -0.099 6.099 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.100 0.900 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.377 4.479 5.569 7.157 hybrid contribution 0.454 -0.803 -1.216 1.526 sum 0.830 3.676 4.354 5.758 Atomic orbital electron populations 1.21802 0.92704 1.02999 1.01587 1.23661 0.98694 1.00322 0.93676 0.89395 1.21949 1.00906 0.96628 0.95467 1.22309 0.95268 0.97874 0.85628 0.89079 1.60947 1.11837 1.07165 1.45704 1.18170 0.88889 0.85628 0.92947 0.97948 1.20793 1.24954 1.13969 0.96504 0.92776 1.24822 0.94933 0.94068 0.97735 1.70041 1.42047 1.18389 1.15382 0.86889 0.80434 0.81600 0.80758 1.20802 1.21295 1.20089 1.20502 0.94709 0.93174 0.95814 1.20886 0.94037 0.98647 1.01353 1.20818 0.96274 0.99201 0.99403 1.20821 0.99206 0.96716 1.00285 1.21135 0.95661 0.98252 1.00854 1.21531 0.93101 1.00769 0.94469 1.25415 0.97683 1.01583 0.99704 1.87518 1.41865 1.59550 1.20968 0.91415 0.92705 0.91606 0.90214 0.90737 0.87217 0.93629 0.87631 0.87906 0.88099 0.87866 0.83085 0.89959 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.04 37.15 0.34 -1.32 16 2 C -0.03 -0.49 3.92 -26.36 -0.10 -0.59 16 3 H 0.09 1.16 8.14 -51.92 -0.42 0.73 16 4 C -0.11 -1.80 5.73 -26.39 -0.15 -1.95 16 5 C 0.10 1.85 2.64 -66.60 -0.18 1.67 16 6 H 0.09 1.87 7.63 -51.93 -0.40 1.47 16 7 N -0.63 -12.72 3.99 -101.02 -0.40 -13.12 16 8 C 0.25 5.59 2.29 -70.02 -0.16 5.43 16 9 H 0.00 0.06 7.53 -51.93 -0.39 -0.33 16 10 C -0.52 -13.29 8.52 -34.44 -0.29 -13.58 16 11 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 12 C 0.09 2.36 5.21 -17.82 -0.09 2.27 16 13 N -0.83 -20.89 9.55 55.43 0.53 -20.36 16 14 Si 0.88 20.40 29.55 -169.99 -5.02 15.38 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.04 -0.89 4.65 -104.63 -0.49 -1.37 16 19 C -0.13 -2.64 9.71 -39.59 -0.38 -3.02 16 20 C -0.14 -2.54 10.05 -39.58 -0.40 -2.94 16 21 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.14 -2.70 10.05 -39.58 -0.40 -3.10 16 23 C -0.08 -1.71 7.62 -39.58 -0.30 -2.01 16 24 C -0.09 -1.50 6.76 38.30 0.26 -1.24 16 25 S -0.32 -5.11 22.66 -107.50 -2.44 -7.54 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.38 7.62 -51.93 -0.40 0.99 16 30 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 31 H 0.31 6.01 7.07 -39.29 -0.28 5.73 16 32 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 33 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.15 3.42 5.78 -52.49 -0.30 3.11 16 38 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 39 H 0.10 1.55 8.03 -51.93 -0.42 1.14 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -25.44 323.81 -11.14 -36.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.94 Total: 9.09 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.75 Total: -24.90 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.13 Total: -33.49 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.44 Total: -7.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -25.44 -11.14 -36.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397721317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.486 kcal (2) G-P(sol) polarization free energy of solvation -25.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds