Wall clock time and date at job start Mon Mar 30 2020 08:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 110.38872 * 2 1 4 4 C 1.53712 * 110.34336 * 237.77549 * 2 1 3 5 5 C 1.52941 * 112.48938 * 243.95526 * 4 2 1 6 6 H 1.08991 * 109.60577 * 89.82814 * 5 4 2 7 7 N 1.46907 * 109.60168 * 209.96595 * 5 4 2 8 8 C 1.46897 * 111.00135 * 204.99881 * 7 5 4 9 9 H 1.08996 * 109.46743 * 325.00253 * 8 7 5 10 10 C 1.50703 * 109.46967 * 84.99890 * 8 7 5 11 11 H 1.08001 * 119.99969 * 234.57837 * 10 8 7 12 12 C 1.37873 * 120.00015 * 54.57544 * 10 8 7 13 13 N 1.31516 * 120.00145 * 350.51555 * 12 10 8 14 14 Si 1.86800 * 120.00082 * 170.51082 * 12 10 8 15 15 H 1.48497 * 109.47129 * 90.00314 * 14 12 10 16 16 H 1.48500 * 109.47175 * 210.00488 * 14 12 10 17 17 H 1.48500 * 109.47059 * 330.00106 * 14 12 10 18 18 C 1.50693 * 109.47326 * 205.00054 * 8 7 5 19 19 C 1.38232 * 120.00273 * 150.99488 * 18 8 7 20 20 C 1.38230 * 120.00208 * 179.74269 * 19 18 8 21 21 C 1.38240 * 120.00187 * 0.53331 * 20 19 18 22 22 C 1.38237 * 119.99343 * 359.74586 * 21 20 19 23 23 C 1.38237 * 120.00456 * 359.97438 * 22 21 20 24 24 C 1.55154 * 108.96187 * 329.89446 * 5 4 2 25 25 S 1.83394 * 110.34311 * 122.22859 * 2 1 3 26 26 H 1.08995 * 109.47290 * 182.21967 * 1 2 3 27 27 H 1.08997 * 109.46876 * 302.22757 * 1 2 3 28 28 H 1.09006 * 109.46857 * 62.22820 * 1 2 3 29 29 H 1.09002 * 108.88340 * 4.74800 * 4 2 1 30 30 H 1.09000 * 108.89016 * 123.15925 * 4 2 1 31 31 H 1.00906 * 110.99888 * 81.04224 * 7 5 4 32 32 H 0.96996 * 120.00478 * 179.97438 * 13 12 10 33 33 H 1.08004 * 119.99779 * 359.97438 * 19 18 8 34 34 H 1.07999 * 120.00418 * 180.29732 * 20 19 18 35 35 H 1.07998 * 120.00224 * 179.76757 * 21 20 19 36 36 H 1.08004 * 119.99474 * 180.02562 * 22 21 20 37 37 H 1.07998 * 119.99727 * 180.02562 * 23 22 21 38 38 H 1.09007 * 111.13254 * 283.53158 * 24 5 4 39 39 H 1.08999 * 111.17011 * 159.36771 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0643 -0.7685 -1.2192 5 6 2.8494 -2.0200 -0.8238 6 1 2.1718 -2.8711 -0.7572 7 7 3.8811 -2.2941 -1.8332 8 6 4.2417 -3.7180 -1.8443 9 1 4.1966 -4.1121 -0.8290 10 6 3.2758 -4.4740 -2.7199 11 1 2.7415 -5.3253 -2.3248 12 6 3.0744 -4.0788 -4.0253 13 7 3.5758 -2.9405 -4.4526 14 14 2.0892 -5.1600 -5.1871 15 1 0.6539 -4.7862 -5.1139 16 1 2.5800 -4.9702 -6.5758 17 1 2.2507 -6.5833 -4.7953 18 6 5.6397 -3.8780 -2.3836 19 6 6.4232 -4.9388 -1.9693 20 6 7.7037 -5.0885 -2.4680 21 6 8.2047 -4.1713 -3.3729 22 6 7.4232 -3.1073 -3.7828 23 6 6.1406 -2.9608 -3.2884 24 6 3.5204 -1.7798 0.5543 25 16 2.1675 -0.9170 1.4546 26 1 -0.3633 -1.0268 0.0398 27 1 -0.3633 0.5480 0.8693 28 1 -0.3633 0.4789 -0.9093 29 1 1.2232 -1.0632 -1.8469 30 1 2.7159 -0.1100 -1.7936 31 1 4.6948 -1.7161 -1.6847 32 1 3.4344 -2.6626 -5.3711 33 1 6.0336 -5.6527 -1.2586 34 1 8.3141 -5.9199 -2.1480 35 1 9.2065 -4.2862 -3.7597 36 1 7.8144 -2.3909 -4.4901 37 1 5.5300 -2.1297 -3.6091 38 1 4.3982 -1.1406 0.4580 39 1 3.7752 -2.7228 1.0379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397721317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:04:30 Heat of formation + Delta-G solvation = 17.275356 kcal Electronic energy + Delta-G solvation = -19695.793226 eV Core-core repulsion = 16921.676871 eV Total energy + Delta-G solvation = -2774.116355 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05714 -38.34463 -35.84522 -33.90371 -32.35880 -31.42700 -29.87691 -27.92509 -27.47328 -24.63546 -23.52171 -22.83421 -21.62613 -20.93681 -18.22332 -17.69389 -17.32805 -16.68101 -16.45785 -15.89897 -15.51662 -15.34157 -14.89767 -14.60371 -14.46126 -14.04688 -13.96149 -13.77817 -13.46715 -13.16705 -12.98282 -12.81052 -12.78052 -12.51892 -12.22976 -12.14908 -11.87172 -11.68667 -11.52367 -11.43023 -11.10634 -10.84550 -10.43947 -9.47371 -9.16214 -8.83463 -8.52281 -7.80294 -6.04506 0.81407 0.91401 0.92468 1.39710 1.40526 1.45082 1.50783 2.49821 3.22069 3.34822 3.56985 3.74678 3.97133 4.07477 4.18614 4.29748 4.36464 4.37656 4.48867 4.51856 4.65440 4.71396 4.76415 4.88491 4.94978 4.97205 5.02462 5.18671 5.21603 5.32666 5.39829 5.45446 5.59791 5.80296 5.86239 5.98984 6.19755 6.31208 6.52224 6.59116 6.98072 7.21929 7.62706 9.08610 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015281 B = 0.006682 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.959792 B = 4189.307721 C = 5354.136219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 H 0.107 0.893 4 C -0.102 4.102 5 C 0.105 3.895 6 H 0.060 0.940 7 N -0.632 5.632 8 C 0.256 3.744 9 H -0.008 1.008 10 C -0.544 4.544 11 H 0.035 0.965 12 C 0.063 3.937 13 N -0.831 5.831 14 Si 0.918 3.082 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.282 1.282 18 C -0.063 4.063 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.094 4.094 24 C -0.084 4.084 25 S -0.333 6.333 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.315 0.685 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 5.053 5.014 7.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.153 4.153 3 H 0.125 0.875 4 C -0.142 4.142 5 C -0.008 4.008 6 H 0.078 0.922 7 N -0.262 5.262 8 C 0.149 3.851 9 H 0.010 0.990 10 C -0.582 4.582 11 H 0.053 0.947 12 C -0.144 4.144 13 N -0.464 5.464 14 Si 0.746 3.254 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.208 1.208 18 C -0.064 4.064 19 C -0.165 4.165 20 C -0.154 4.154 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.113 4.113 24 C -0.234 4.234 25 S -0.108 6.108 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.111 0.889 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.474 5.099 5.472 7.623 hybrid contribution 0.151 -1.009 -1.153 1.539 sum 1.625 4.090 4.319 6.167 Atomic orbital electron populations 1.21795 0.91238 1.02702 1.03070 1.23724 0.99837 1.00409 0.91357 0.87510 1.21831 1.00091 0.95883 0.96350 1.22220 0.94476 0.97578 0.86524 0.92153 1.60766 1.12272 1.06187 1.46969 1.17984 0.89088 0.86268 0.91797 0.99014 1.20943 1.25984 1.13921 0.97386 0.94697 1.25208 0.95798 0.94939 0.98488 1.70136 1.42438 1.18655 1.15140 0.86232 0.79577 0.80162 0.79460 1.20751 1.21207 1.20781 1.20494 0.94703 0.94366 0.96831 1.21083 0.95112 0.98403 1.01942 1.21193 0.95577 0.99999 0.98656 1.21232 1.00479 0.95518 0.99222 1.21408 0.94902 0.99202 1.00930 1.21405 0.94168 1.00502 0.95186 1.25209 0.98047 1.01788 0.98361 1.87560 1.41779 1.59713 1.21769 0.92627 0.91269 0.90026 0.91514 0.90940 0.86673 0.93954 0.87354 0.84741 0.84558 0.85797 0.84874 0.88927 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.04 71.98 0.65 -2.37 16 2 C -0.02 -0.66 3.92 30.83 0.12 -0.54 16 3 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 4 C -0.10 -3.33 5.73 30.81 0.18 -3.15 16 5 C 0.10 3.88 2.64 45.63 0.12 4.00 16 6 H 0.06 2.60 7.63 -2.39 -0.02 2.58 16 7 N -0.63 -26.32 3.99 -473.51 -1.89 -28.21 16 8 C 0.26 11.80 2.29 43.42 0.10 11.90 16 9 H -0.01 -0.36 7.53 -2.39 -0.02 -0.38 16 10 C -0.54 -28.48 8.52 25.60 0.22 -28.26 16 11 H 0.03 1.90 7.83 -2.91 -0.02 1.87 16 12 C 0.06 3.24 5.21 84.65 0.44 3.69 16 13 N -0.83 -42.53 9.55 21.45 0.20 -42.32 16 14 Si 0.92 42.38 29.55 68.60 2.03 44.41 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 18 C -0.06 -2.75 4.65 -19.87 -0.09 -2.85 16 19 C -0.15 -5.84 9.71 22.27 0.22 -5.62 16 20 C -0.14 -4.63 10.05 22.27 0.22 -4.41 16 21 C -0.15 -4.80 10.05 22.27 0.22 -4.58 16 22 C -0.15 -5.33 10.05 22.27 0.22 -5.11 16 23 C -0.09 -3.99 7.62 22.27 0.17 -3.82 16 24 C -0.08 -2.69 6.76 72.72 0.49 -2.20 16 25 S -0.33 -10.21 22.66 -56.49 -1.28 -11.49 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 2.34 7.62 -2.39 -0.02 2.32 16 30 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 31 H 0.31 12.46 7.07 -89.69 -0.63 11.82 16 32 H 0.25 12.62 8.31 -92.71 -0.77 11.85 16 33 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.13 6.09 5.78 -2.91 -0.02 6.08 16 38 H 0.09 2.79 7.90 -2.38 -0.02 2.77 16 39 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 Total: -1.00 -54.37 323.81 2.74 -51.63 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.39 Total: 29.31 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.28 Total: -43.33 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.68 Total: -70.53 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -1.28 Total: -11.49 kcal Total: -54.37 2.74 -51.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397721317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.901 kcal (2) G-P(sol) polarization free energy of solvation -54.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds