Wall clock time and date at job start Mon Mar 30 2020 08:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.38642 * 2 1 4 4 S 1.83389 * 110.34200 * 237.77169 * 2 1 3 5 5 C 1.83996 * 95.85089 * 221.37831 * 4 2 1 6 6 C 1.55150 * 100.90866 * 35.35356 * 5 4 2 7 7 C 1.52943 * 108.81114 * 318.65022 * 6 5 4 8 8 H 1.09002 * 108.88630 * 269.21865 * 7 6 5 9 9 N 1.46898 * 108.88433 * 150.80268 * 7 6 5 10 10 C 1.46897 * 110.99589 * 86.45899 * 9 7 6 11 11 C 1.50709 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38628 * 119.74814 * 269.72725 * 11 10 9 13 13 C 1.37626 * 120.24576 * 179.72194 * 12 11 10 14 14 C 1.40715 * 119.74292 * 0.56620 * 13 12 11 15 15 C 1.41388 * 120.24397 * 179.68553 * 14 13 12 16 16 H 1.08001 * 120.00168 * 204.40213 * 15 14 13 17 17 C 1.39950 * 120.00113 * 24.39981 * 15 14 13 18 18 N 1.30824 * 119.99663 * 17.86541 * 17 15 14 19 19 Si 1.86796 * 119.99940 * 197.85844 * 17 15 14 20 20 H 1.48493 * 109.47479 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46974 * 120.00543 * 19 17 15 22 22 H 1.48506 * 109.47139 * 240.00190 * 19 17 15 23 23 C 1.40712 * 119.51396 * 359.70639 * 14 13 12 24 24 C 1.37624 * 119.74556 * 0.02562 * 23 14 13 25 25 H 1.09009 * 109.46715 * 180.77526 * 1 2 3 26 26 H 1.08999 * 109.47110 * 300.76794 * 1 2 3 27 27 H 1.08991 * 109.47104 * 60.77943 * 1 2 3 28 28 H 1.08996 * 111.12689 * 277.44000 * 5 4 2 29 29 H 1.09005 * 111.16696 * 153.28331 * 5 4 2 30 30 H 1.08994 * 109.60501 * 78.49382 * 6 5 4 31 31 H 1.08998 * 109.59885 * 198.81500 * 6 5 4 32 32 H 1.00894 * 111.00657 * 322.50440 * 9 7 6 33 33 H 1.09001 * 109.47075 * 299.99635 * 10 9 7 34 34 H 1.08997 * 109.47907 * 59.99753 * 10 9 7 35 35 H 1.08002 * 119.87964 * 359.97438 * 12 11 10 36 36 H 1.07993 * 120.12548 * 180.27882 * 13 12 11 37 37 H 0.97002 * 119.99497 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.13251 * 180.02562 * 23 14 13 39 39 H 1.07998 * 119.88007 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 16 2.1675 -0.9170 -1.4546 5 6 3.5205 -1.7797 -0.5542 6 6 2.8495 -2.0201 0.8238 7 6 2.0636 -0.7676 1.2148 8 1 2.7138 -0.1081 1.7896 9 7 0.9279 -1.1631 2.0585 10 6 1.3246 -1.2448 3.4706 11 6 0.1362 -1.6515 4.3034 12 6 -0.6948 -0.6788 4.8373 13 6 -1.7861 -1.0389 5.5947 14 6 -2.0499 -2.3998 5.8361 15 6 -3.1643 -2.7814 6.6182 16 1 -3.1648 -3.7325 7.1297 17 6 -4.2667 -1.9265 6.7295 18 7 -4.4352 -0.9603 5.8638 19 14 -5.4976 -2.1651 8.1142 20 1 -5.0827 -3.3188 8.9521 21 1 -5.5461 -0.9387 8.9502 22 1 -6.8425 -2.4271 7.5414 23 6 -1.1963 -3.3782 5.2939 24 6 -0.1140 -2.9953 4.5349 25 1 -0.3633 -1.0277 0.0139 26 1 -0.3633 0.5257 0.8830 27 1 -0.3633 0.5016 -0.8968 28 1 4.3982 -1.1406 -0.4579 29 1 3.7756 -2.7231 -1.0371 30 1 2.1719 -2.8711 0.7572 31 1 3.6152 -2.2201 1.5734 32 1 0.5299 -2.0351 1.7437 33 1 2.1176 -1.9841 3.5830 34 1 1.6852 -0.2717 3.8037 35 1 -0.4875 0.3653 4.6549 36 1 -2.4348 -0.2797 6.0059 37 1 -5.1996 -0.3680 5.9407 38 1 -1.3896 -4.4256 5.4726 39 1 0.5428 -3.7444 4.1180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399108035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:43 Heat of formation + Delta-G solvation = 10.748052 kcal Electronic energy + Delta-G solvation = -18823.804357 eV Core-core repulsion = 16049.404957 eV Total energy + Delta-G solvation = -2774.399400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.45263 -37.29600 -34.12437 -32.61976 -31.83607 -29.77863 -29.22551 -26.66045 -25.14205 -23.48891 -22.99350 -20.99548 -20.06788 -19.77019 -17.31183 -16.85814 -15.83969 -15.42626 -15.24520 -14.44976 -14.17967 -14.05257 -13.62542 -13.44730 -13.17936 -12.99420 -12.50831 -12.32349 -12.06108 -11.96100 -11.65741 -11.53388 -11.18404 -11.10450 -10.99579 -10.92604 -10.81299 -10.49666 -10.39552 -9.86192 -9.59484 -9.38630 -9.14352 -8.14811 -7.76224 -7.45940 -7.32281 -6.77442 -4.36526 1.79124 2.27519 2.72251 3.05556 3.07157 3.11445 3.15783 3.91949 4.33337 4.41443 4.61772 4.72988 4.92746 4.95132 5.08844 5.34780 5.42894 5.51187 5.64706 5.69502 5.80377 5.82799 5.89010 6.06558 6.19779 6.21257 6.32369 6.42075 6.59880 6.94472 7.05867 7.27344 7.31396 7.34312 7.59134 7.63003 7.86620 8.04680 8.12676 8.29007 8.63647 8.88438 8.96636 10.16737 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.003441 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.890513 B = 8136.379472 C = 8504.708515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.019 4.019 3 H 0.092 0.908 4 S -0.314 6.314 5 C -0.065 4.065 6 C -0.152 4.152 7 C 0.077 3.923 8 H 0.081 0.919 9 N -0.669 5.669 10 C 0.124 3.876 11 C -0.215 4.215 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.113 3.887 15 C -0.463 4.463 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.790 5.790 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.228 4.228 24 C -0.085 4.085 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.345 0.655 33 H 0.018 0.982 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 1.270 -7.897 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 H 0.110 0.890 4 S -0.089 6.089 5 C -0.214 4.214 6 C -0.192 4.192 7 C -0.035 4.035 8 H 0.100 0.900 9 N -0.300 5.300 10 C -0.004 4.004 11 C -0.217 4.217 12 C -0.097 4.097 13 C -0.187 4.187 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.415 5.415 19 Si 0.731 3.269 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.247 4.247 24 C -0.103 4.103 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.069 2.076 -9.059 13.703 hybrid contribution 0.308 -0.880 1.651 1.896 sum 10.378 1.196 -7.408 12.807 Atomic orbital electron populations 1.21472 0.90728 1.03341 1.01477 1.23681 1.00731 0.99555 0.90841 0.88999 1.87876 1.40410 1.59325 1.21244 1.24172 0.97771 1.02577 0.96856 1.23170 1.00318 0.99844 0.95877 1.22038 0.92028 0.95050 0.94383 0.90045 1.60968 1.27918 1.38743 1.02337 1.20631 0.94704 0.98855 0.86205 1.18854 1.00984 0.93239 1.08614 1.20485 0.95046 0.96468 0.97724 1.21312 0.97518 0.96613 1.03256 1.17622 0.91061 0.91380 0.88897 1.19637 0.99655 1.03628 1.26331 0.90484 1.25913 0.98722 0.93972 0.95587 1.69842 1.27106 1.14314 1.30224 0.86296 0.79728 0.79490 0.81424 1.18424 1.19696 1.19982 1.20927 1.00085 0.97523 1.06205 1.20343 0.96995 0.94072 0.98933 0.91647 0.89808 0.93737 0.89406 0.88006 0.90180 0.90281 0.83550 0.96372 0.92013 0.89522 0.86546 0.90910 0.89212 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 8.24 37.16 0.31 -1.16 16 2 C -0.02 -0.23 3.91 -26.58 -0.10 -0.33 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 S -0.31 -3.87 22.66 -107.50 -2.44 -6.31 16 5 C -0.07 -0.62 7.52 38.30 0.29 -0.33 16 6 C -0.15 -1.56 5.80 -25.62 -0.15 -1.71 16 7 C 0.08 0.92 2.95 -67.59 -0.20 0.72 16 8 H 0.08 0.94 7.71 -51.93 -0.40 0.54 16 9 N -0.67 -9.68 4.25 -107.86 -0.46 -10.13 16 10 C 0.12 2.00 5.57 -4.97 -0.03 1.97 16 11 C -0.22 -4.43 5.42 -104.33 -0.56 -4.99 16 12 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 13 C -0.17 -4.29 8.70 -38.87 -0.34 -4.62 16 14 C 0.11 2.97 5.57 -106.83 -0.60 2.38 16 15 C -0.46 -12.21 9.05 -37.74 -0.34 -12.55 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 18 N -0.79 -20.29 10.95 55.55 0.61 -19.68 16 19 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.23 -5.49 9.80 -38.87 -0.38 -5.88 16 24 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 25 H 0.06 0.92 7.48 -51.92 -0.39 0.53 16 26 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.89 7.50 -51.93 -0.39 0.50 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.34 5.22 7.60 -39.29 -0.30 4.92 16 33 H 0.02 0.28 7.98 -51.93 -0.41 -0.14 16 34 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 37 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 38 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.08 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -26.32 327.04 -11.31 -37.64 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.96 Total: 9.16 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.96 Total: -29.07 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: 0.15 Total: -29.81 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.44 Total: -6.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.32 -11.31 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399108035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.384 kcal (2) G-P(sol) polarization free energy of solvation -26.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds