Wall clock time and date at job start Mon Mar 30 2020 08:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37100 * 119.99628 * 2 1 4 4 H 1.07994 * 119.99575 * 202.74341 * 3 2 1 5 5 C 1.38953 * 120.00122 * 22.74821 * 3 2 1 6 6 N 1.31406 * 119.99769 * 8.54984 * 5 3 2 7 7 Si 1.86798 * 119.99908 * 188.55188 * 5 3 2 8 8 H 1.48500 * 109.47003 * 94.89525 * 7 5 3 9 9 H 1.48504 * 109.47087 * 214.89377 * 7 5 3 10 10 H 1.48501 * 109.47035 * 334.89723 * 7 5 3 11 11 C 1.34770 * 119.99790 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99677 * 179.97438 * 11 2 1 13 13 C 1.50695 * 120.00570 * 0.02562 * 11 2 1 14 14 H 1.09000 * 112.84967 * 354.03650 * 13 11 2 15 15 C 1.53783 * 113.61604 * 125.23209 * 13 11 2 16 16 C 1.53786 * 87.17271 * 89.16200 * 15 13 11 17 17 C 1.53782 * 113.69160 * 222.77090 * 13 11 2 18 18 H 1.08999 * 113.61648 * 156.23851 * 17 13 11 19 19 C 1.50702 * 113.61334 * 25.42104 * 17 13 11 20 20 C 1.38244 * 119.96783 * 259.00276 * 19 17 13 21 21 C 1.38206 * 120.02212 * 179.72839 * 20 19 17 22 22 C 1.38462 * 119.97042 * 0.52536 * 21 20 19 23 23 F 1.35101 * 120.02335 * 179.73187 * 22 21 20 24 24 C 1.38459 * 119.94839 * 359.74782 * 22 21 20 25 25 C 1.38191 * 119.97776 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46647 * 275.63240 * 1 2 3 27 27 H 1.08993 * 109.47203 * 35.63722 * 1 2 3 28 28 H 1.09006 * 109.46691 * 155.63970 * 1 2 3 29 29 H 0.97003 * 119.99948 * 180.02562 * 6 5 3 30 30 H 1.08999 * 113.61633 * 203.74632 * 15 13 11 31 31 H 1.09000 * 113.61478 * 334.57149 * 15 13 11 32 32 H 1.09001 * 113.61946 * 140.02206 * 16 15 13 33 33 H 1.09000 * 113.61025 * 270.92977 * 16 15 13 34 34 H 1.08002 * 119.99582 * 359.97438 * 20 19 17 35 35 H 1.08001 * 120.01669 * 180.25329 * 21 20 19 36 36 H 1.08009 * 120.00981 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.98954 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1675 1.2237 -0.3616 5 6 1.5368 2.3439 0.4653 6 7 0.3665 2.2734 1.0589 7 14 2.3752 3.9988 0.2469 8 1 1.8708 4.6500 -0.9887 9 1 2.0784 4.8624 1.4180 10 1 3.8427 3.7996 0.1378 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.3086 -2.3395 0.1023 15 6 1.7819 -3.4114 -1.1531 16 6 2.8633 -3.9776 -0.2176 17 6 1.9715 -3.5249 0.9541 18 1 1.2492 -4.2773 1.2708 19 6 2.7421 -2.9322 2.1056 20 6 4.1239 -2.9048 2.0705 21 6 4.8316 -2.3564 3.1234 22 6 4.1564 -1.8443 4.2184 23 9 4.8474 -1.3129 5.2506 24 6 2.7727 -1.8775 4.2548 25 6 2.0670 -2.4211 3.1983 26 1 -0.3632 0.1009 1.0227 27 1 -0.3633 0.8351 -0.5987 28 1 -0.3633 -0.9362 -0.4239 29 1 -0.0621 3.0808 1.3835 30 1 1.0082 -4.1337 -1.4136 31 1 2.1850 -2.8911 -2.0219 32 1 2.9787 -5.0592 -0.2878 33 1 3.8125 -3.4450 -0.2749 34 1 4.6504 -3.3084 1.2183 35 1 5.9109 -2.3314 3.0940 36 1 2.2451 -1.4786 5.1087 37 1 0.9877 -2.4474 3.2267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528319967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:33:36 Heat of formation + Delta-G solvation = -18.237299 kcal Electronic energy + Delta-G solvation = -22082.013895 eV Core-core repulsion = 18740.144419 eV Total energy + Delta-G solvation = -3341.869475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.47404 -40.24552 -38.01652 -36.49681 -34.38883 -31.56039 -30.70753 -30.33210 -26.97747 -25.70806 -24.94479 -24.00942 -22.54546 -21.36066 -20.30542 -17.79225 -17.33328 -16.82896 -16.51195 -15.73195 -15.34513 -15.16763 -14.73433 -14.24249 -14.04565 -13.86625 -13.70930 -13.13272 -12.96724 -12.72981 -12.36228 -12.05262 -11.54363 -11.48121 -11.35228 -11.21197 -11.04771 -10.93372 -10.82565 -10.43884 -10.32053 -10.29953 -9.98233 -9.70802 -8.97937 -8.59442 -8.24904 -7.95218 -7.60167 -6.24569 -3.82473 1.62781 1.75568 3.17763 3.27064 3.33021 3.85405 4.05746 4.15755 4.67321 4.74678 4.92574 5.07167 5.09955 5.20305 5.29927 5.31332 5.49791 5.55975 5.72303 5.83156 5.88442 5.95784 6.11244 6.11682 6.28741 6.34038 6.42584 6.47976 6.51062 6.56642 6.73602 6.79547 6.95032 7.05876 7.29766 7.37551 7.60701 8.19382 8.55038 9.25664 9.50121 10.07072 10.77704 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.007915 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.757722 B = 3536.773541 C = 4764.784284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.445 5.445 3 C -0.299 4.299 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.886 5.886 7 Si 0.923 3.077 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.468 3.532 12 O -0.579 6.579 13 C -0.123 4.123 14 H 0.087 0.913 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.055 4.055 18 H 0.098 0.902 19 C -0.067 4.067 20 C -0.053 4.053 21 C -0.155 4.155 22 C 0.086 3.914 23 F -0.149 7.149 24 C -0.154 4.154 25 C -0.084 4.084 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.265 0.735 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -11.237 1.291 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.427 4.427 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.526 5.526 7 Si 0.750 3.250 8 H -0.205 1.205 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.256 3.744 12 O -0.463 6.463 13 C -0.145 4.145 14 H 0.105 0.895 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.073 4.073 18 H 0.116 0.884 19 C -0.067 4.067 20 C -0.071 4.071 21 C -0.174 4.174 22 C 0.067 3.933 23 F -0.128 7.128 24 C -0.173 4.173 25 C -0.102 4.102 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.336 -11.031 1.416 11.126 hybrid contribution 0.100 1.308 0.205 1.328 sum 0.436 -9.722 1.621 9.866 Atomic orbital electron populations 1.21573 0.81423 0.98006 1.02192 1.43519 1.05390 1.04703 1.62746 1.19625 0.99405 0.83973 1.39729 0.88553 1.25312 0.96422 0.99911 0.95647 1.69988 1.15912 1.29002 1.37656 0.85946 0.79770 0.81576 0.77663 1.20533 1.20949 1.19397 1.19323 0.87695 0.83893 0.83501 1.90477 1.13634 1.86797 1.55425 1.22547 1.00456 0.94222 0.97247 0.89482 1.22678 0.98634 0.97942 0.96953 1.23126 0.99341 0.99643 0.94803 1.21413 0.97581 0.96825 0.91522 0.88354 1.19599 0.93793 0.98797 0.94517 1.20824 0.93473 0.96499 0.96269 1.21016 1.00379 1.02134 0.93896 1.17670 0.90070 0.99550 0.86059 1.91441 1.79729 1.84450 1.57196 1.20950 0.92172 1.03288 1.00863 1.20729 0.99730 0.97206 0.92538 0.92167 0.91793 0.95402 0.92450 0.90300 0.91196 0.92103 0.87919 0.85059 0.85523 0.85479 0.85733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.43 59.85 0.50 3.01 16 2 N -0.45 -11.30 3.02 -122.19 -0.37 -11.67 16 3 C -0.30 -8.37 9.30 -14.93 -0.14 -8.51 16 4 H 0.10 2.84 7.40 -52.49 -0.39 2.45 16 5 C 0.03 0.79 5.20 -17.47 -0.09 0.70 16 6 N -0.89 -23.79 10.46 55.50 0.58 -23.21 16 7 Si 0.92 21.29 29.56 -169.99 -5.03 16.26 16 8 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.47 10.89 6.12 -10.99 -0.07 10.83 16 12 O -0.58 -14.86 12.89 5.54 0.07 -14.78 16 13 C -0.12 -2.17 3.73 -90.96 -0.34 -2.51 16 14 H 0.09 1.43 5.73 -51.93 -0.30 1.13 16 15 C -0.12 -1.83 7.63 -25.92 -0.20 -2.03 16 16 C -0.13 -1.91 6.59 -25.77 -0.17 -2.08 16 17 C -0.05 -0.84 3.95 -90.81 -0.36 -1.20 16 18 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.07 -1.16 3.95 -104.62 -0.41 -1.58 16 20 C -0.05 -0.92 7.68 -39.59 -0.30 -1.23 16 21 C -0.16 -2.71 10.03 -39.51 -0.40 -3.11 16 22 C 0.09 1.55 7.30 -39.42 -0.29 1.26 16 23 F -0.15 -2.68 17.27 2.25 0.04 -2.64 16 24 C -0.15 -2.69 10.03 -39.52 -0.40 -3.09 16 25 C -0.08 -1.45 9.73 -39.60 -0.39 -1.83 16 26 H 0.06 1.41 7.35 -51.93 -0.38 1.03 16 27 H 0.06 1.51 7.24 -51.93 -0.38 1.13 16 28 H 0.03 0.51 5.74 -51.93 -0.30 0.21 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.72 4.98 -51.93 -0.26 1.46 16 34 H 0.13 2.14 5.85 -52.49 -0.31 1.83 16 35 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -30.53 303.46 -7.57 -38.10 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.40 Total: 4.73 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.04 Total: -11.37 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.21 Total: -34.88 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.53 -7.57 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528319967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.865 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds