Wall clock time and date at job start Mon Mar 30 2020 08:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37100 * 119.99628 * 2 1 4 4 H 1.07994 * 119.99575 * 202.74341 * 3 2 1 5 5 C 1.38953 * 120.00122 * 22.74821 * 3 2 1 6 6 N 1.31406 * 119.99769 * 8.54984 * 5 3 2 7 7 Si 1.86798 * 119.99908 * 188.55188 * 5 3 2 8 8 H 1.48500 * 109.47003 * 94.89525 * 7 5 3 9 9 H 1.48504 * 109.47087 * 214.89377 * 7 5 3 10 10 H 1.48501 * 109.47035 * 334.89723 * 7 5 3 11 11 C 1.34770 * 119.99790 * 180.02562 * 2 1 3 12 12 O 1.21302 * 119.99677 * 179.97438 * 11 2 1 13 13 C 1.50695 * 120.00570 * 0.02562 * 11 2 1 14 14 H 1.09000 * 112.84967 * 354.03650 * 13 11 2 15 15 C 1.53783 * 113.61604 * 125.23209 * 13 11 2 16 16 C 1.53786 * 87.17271 * 89.16200 * 15 13 11 17 17 C 1.53782 * 113.69160 * 222.77090 * 13 11 2 18 18 H 1.08999 * 113.61648 * 156.23851 * 17 13 11 19 19 C 1.50702 * 113.61334 * 25.42104 * 17 13 11 20 20 C 1.38244 * 119.96783 * 259.00276 * 19 17 13 21 21 C 1.38206 * 120.02212 * 179.72839 * 20 19 17 22 22 C 1.38462 * 119.97042 * 0.52536 * 21 20 19 23 23 F 1.35101 * 120.02335 * 179.73187 * 22 21 20 24 24 C 1.38459 * 119.94839 * 359.74782 * 22 21 20 25 25 C 1.38191 * 119.97776 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46647 * 275.63240 * 1 2 3 27 27 H 1.08993 * 109.47203 * 35.63722 * 1 2 3 28 28 H 1.09006 * 109.46691 * 155.63970 * 1 2 3 29 29 H 0.97003 * 119.99948 * 180.02562 * 6 5 3 30 30 H 1.08999 * 113.61633 * 203.74632 * 15 13 11 31 31 H 1.09000 * 113.61478 * 334.57149 * 15 13 11 32 32 H 1.09001 * 113.61946 * 140.02206 * 16 15 13 33 33 H 1.09000 * 113.61025 * 270.92977 * 16 15 13 34 34 H 1.08002 * 119.99582 * 359.97438 * 20 19 17 35 35 H 1.08001 * 120.01669 * 180.25329 * 21 20 19 36 36 H 1.08009 * 120.00981 * 179.97438 * 24 22 21 37 37 H 1.08002 * 119.98954 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1675 1.2237 -0.3616 5 6 1.5368 2.3439 0.4653 6 7 0.3665 2.2734 1.0589 7 14 2.3752 3.9988 0.2469 8 1 1.8708 4.6500 -0.9887 9 1 2.0784 4.8624 1.4180 10 1 3.8427 3.7996 0.1378 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0010 13 6 1.3855 -2.4723 -0.0017 14 1 0.3086 -2.3395 0.1023 15 6 1.7819 -3.4114 -1.1531 16 6 2.8633 -3.9776 -0.2176 17 6 1.9715 -3.5249 0.9541 18 1 1.2492 -4.2773 1.2708 19 6 2.7421 -2.9322 2.1056 20 6 4.1239 -2.9048 2.0705 21 6 4.8316 -2.3564 3.1234 22 6 4.1564 -1.8443 4.2184 23 9 4.8474 -1.3129 5.2506 24 6 2.7727 -1.8775 4.2548 25 6 2.0670 -2.4211 3.1983 26 1 -0.3632 0.1009 1.0227 27 1 -0.3633 0.8351 -0.5987 28 1 -0.3633 -0.9362 -0.4239 29 1 -0.0621 3.0808 1.3835 30 1 1.0082 -4.1337 -1.4136 31 1 2.1850 -2.8911 -2.0219 32 1 2.9787 -5.0592 -0.2878 33 1 3.8125 -3.4450 -0.2749 34 1 4.6504 -3.3084 1.2183 35 1 5.9109 -2.3314 3.0940 36 1 2.2451 -1.4786 5.1087 37 1 0.9877 -2.4474 3.2267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528319967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:33:35 Heat of formation + Delta-G solvation = -34.464634 kcal Electronic energy + Delta-G solvation = -22082.717565 eV Core-core repulsion = 18740.144419 eV Total energy + Delta-G solvation = -3342.573145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.88091 -41.67010 -39.55380 -38.00700 -36.29282 -33.55652 -32.04403 -31.65565 -28.73885 -27.34456 -26.18965 -25.77512 -23.93203 -22.66935 -21.81976 -19.41289 -18.73455 -18.69450 -18.08184 -17.14587 -16.89558 -16.58462 -16.39281 -15.82617 -15.58149 -15.45021 -15.38089 -14.43867 -14.30111 -14.25717 -13.88020 -13.68164 -13.20088 -13.10992 -12.95736 -12.71141 -12.64484 -12.55844 -12.29891 -12.17815 -12.11714 -11.70550 -11.25813 -11.07327 -10.88049 -10.04305 -9.91859 -9.59755 -9.32424 -8.26383 -5.91866 0.25982 0.40273 1.33926 1.37201 1.48710 2.11805 2.27338 2.69440 3.11036 3.13734 3.35975 3.65556 3.81736 3.85748 3.99273 4.00836 4.13887 4.23767 4.39039 4.43542 4.55420 4.71707 4.82450 4.90014 5.01145 5.03674 5.11593 5.13993 5.18458 5.22112 5.28962 5.40174 5.46730 5.47256 5.58765 5.78100 6.04444 6.16592 6.56984 7.25710 7.60465 8.18058 8.73320 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.007915 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.757722 B = 3536.773541 C = 4764.784284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.469 5.469 3 C -0.331 4.331 4 H 0.067 0.933 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.979 3.021 8 H -0.266 1.266 9 H -0.276 1.276 10 H -0.279 1.279 11 C 0.465 3.535 12 O -0.610 6.610 13 C -0.132 4.132 14 H 0.104 0.896 15 C -0.112 4.112 16 C -0.130 4.130 17 C -0.047 4.047 18 H 0.140 0.860 19 C -0.077 4.077 20 C -0.066 4.066 21 C -0.167 4.167 22 C 0.064 3.936 23 F -0.153 7.153 24 C -0.165 4.165 25 C -0.095 4.095 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.269 0.731 30 H 0.123 0.877 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 -12.814 0.854 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.188 5.188 3 C -0.459 4.459 4 H 0.085 0.915 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.803 3.197 8 H -0.191 1.191 9 H -0.202 1.202 10 H -0.204 1.204 11 C 0.255 3.745 12 O -0.496 6.496 13 C -0.153 4.153 14 H 0.122 0.878 15 C -0.150 4.150 16 C -0.167 4.167 17 C -0.065 4.065 18 H 0.158 0.842 19 C -0.077 4.077 20 C -0.083 4.083 21 C -0.186 4.186 22 C 0.045 3.955 23 F -0.132 7.132 24 C -0.183 4.183 25 C -0.113 4.113 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.027 -12.621 0.975 12.700 hybrid contribution 0.568 1.757 0.334 1.877 sum -0.459 -10.864 1.309 10.952 Atomic orbital electron populations 1.21462 0.79882 0.99410 1.01183 1.43778 1.06477 1.04693 1.63885 1.19500 0.98898 0.86137 1.41390 0.91531 1.25951 0.97066 1.02376 0.95145 1.70064 1.16377 1.29805 1.37577 0.85128 0.78193 0.78077 0.78254 1.19069 1.20160 1.20443 1.20358 0.87754 0.85291 0.81140 1.90456 1.15442 1.87662 1.56035 1.22549 1.00547 0.91831 1.00372 0.87790 1.22752 0.99619 0.97499 0.95091 1.23061 0.97858 1.01539 0.94198 1.21608 0.98072 0.96421 0.90408 0.84203 1.19969 0.93969 0.98534 0.95270 1.21057 0.94112 0.96752 0.96422 1.21287 1.01375 1.02019 0.93886 1.17916 0.90661 1.00483 0.86440 1.91422 1.79835 1.84602 1.57315 1.21243 0.92135 1.03264 1.01704 1.21049 1.00816 0.97005 0.92409 0.93661 0.93779 0.91163 0.92132 0.85895 0.93182 0.88473 0.90909 0.84344 0.84173 0.84066 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.44 8.43 127.77 1.08 6.52 16 2 N -0.47 -23.96 3.02 -658.88 -1.99 -25.94 16 3 C -0.33 -19.02 9.30 84.04 0.78 -18.23 16 4 H 0.07 4.12 7.40 -2.91 -0.02 4.10 16 5 C 0.00 -0.24 5.20 84.93 0.44 0.20 16 6 N -0.90 -48.40 10.46 21.66 0.23 -48.17 16 7 Si 0.98 44.11 29.56 68.60 2.03 46.14 16 8 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 C 0.47 21.47 6.12 87.66 0.54 22.00 16 12 O -0.61 -31.85 12.89 -3.10 -0.04 -31.89 16 13 C -0.13 -4.25 3.73 -11.01 -0.04 -4.30 16 14 H 0.10 2.98 5.73 -2.39 -0.01 2.97 16 15 C -0.11 -2.88 7.63 31.12 0.24 -2.65 16 16 C -0.13 -3.33 6.59 31.22 0.21 -3.12 16 17 C -0.05 -1.27 3.95 -10.92 -0.04 -1.31 16 18 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 19 C -0.08 -2.56 3.95 -19.86 -0.08 -2.64 16 20 C -0.07 -2.27 7.68 22.26 0.17 -2.10 16 21 C -0.17 -5.88 10.03 22.32 0.22 -5.66 16 22 C 0.06 2.34 7.30 22.38 0.16 2.50 16 23 F -0.15 -5.55 17.27 44.97 0.78 -4.78 16 24 C -0.16 -5.71 10.03 22.31 0.22 -5.48 16 25 C -0.09 -3.15 9.73 22.26 0.22 -2.93 16 26 H 0.04 2.09 7.35 -2.39 -0.02 2.08 16 27 H 0.04 2.07 7.24 -2.39 -0.02 2.05 16 28 H 0.07 2.42 5.74 -2.38 -0.01 2.41 16 29 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.35 4.98 -2.39 -0.01 2.34 16 34 H 0.14 4.49 5.85 -2.91 -0.02 4.47 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -68.09 303.46 6.21 -61.89 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.09 Total: 19.96 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.11 Total: -17.20 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.76 Total: -74.12 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.04 Total: -31.89 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.78 Total: -4.78 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.09 6.21 -61.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528319967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.423 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds