Wall clock time and date at job start Mon Mar 30 2020 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46854 * 2 1 4 4 C 1.50699 * 109.46905 * 120.00535 * 2 1 3 5 5 H 1.07998 * 120.00346 * 120.00686 * 4 2 1 6 6 C 1.37879 * 119.99739 * 299.99398 * 4 2 1 7 7 N 1.31511 * 120.00192 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99738 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46749 * 90.00500 * 8 6 4 10 10 H 1.48501 * 109.46673 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47235 * 330.00464 * 8 6 4 12 12 C 1.50699 * 109.46887 * 240.00214 * 2 1 3 13 13 O 1.21287 * 119.99869 * 261.04736 * 12 2 1 14 14 N 1.34778 * 120.00047 * 81.04764 * 12 2 1 15 15 C 1.46923 * 120.54598 * 354.87174 * 14 12 2 16 16 C 1.53432 * 107.79687 * 224.54175 * 15 14 12 17 17 C 1.52857 * 108.94169 * 296.69379 * 16 15 14 18 18 C 1.50884 * 110.34006 * 51.43855 * 17 16 15 19 19 C 1.38525 * 118.84871 * 159.48485 * 18 17 16 20 20 C 1.38088 * 120.33939 * 179.72640 * 19 18 17 21 21 C 1.38536 * 120.12026 * 359.97438 * 20 19 18 22 22 F 1.35106 * 120.06872 * 180.02562 * 21 20 19 23 23 C 1.38252 * 119.85482 * 0.03547 * 21 20 19 24 24 C 1.38591 * 121.54146 * 339.32113 * 18 17 16 25 25 H 1.09000 * 109.47206 * 309.10634 * 1 2 3 26 26 H 1.09001 * 109.47656 * 69.10712 * 1 2 3 27 27 H 1.08999 * 109.47458 * 189.10760 * 1 2 3 28 28 H 0.96999 * 120.00347 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.79947 * 104.96462 * 15 14 12 30 30 H 1.09007 * 109.79537 * 344.11172 * 15 14 12 31 31 H 1.08992 * 109.57693 * 56.55992 * 16 15 14 32 32 H 1.08997 * 109.57830 * 176.82337 * 16 15 14 33 33 H 1.09010 * 109.29783 * 171.86151 * 17 16 15 34 34 H 1.08998 * 109.30553 * 291.23200 * 17 16 15 35 35 H 1.08003 * 119.83279 * 359.69884 * 19 18 17 36 36 H 1.07999 * 119.93473 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.98980 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.6304 -0.5442 4.4118 10 1 1.3443 -0.9492 5.1122 11 1 2.4879 -2.5656 3.7121 12 6 2.0323 -0.7104 -1.2305 13 8 2.3885 -1.8676 -1.1597 14 7 2.0856 -0.0598 -2.4096 15 6 1.5536 1.3040 -2.5347 16 6 0.7368 1.3717 -3.8318 17 6 1.6681 1.1233 -5.0182 18 6 2.4678 -0.1378 -4.8022 19 6 3.0324 -0.7674 -5.8993 20 6 3.7749 -1.9202 -5.7364 21 6 3.9604 -2.4547 -4.4718 22 9 4.6875 -3.5824 -4.3136 23 6 3.3996 -1.8318 -3.3723 24 6 2.6500 -0.6729 -3.5368 25 1 -0.3633 0.6482 0.7974 26 1 -0.3634 0.3665 -0.9601 27 1 -0.3634 -1.0147 0.1627 28 1 0.7082 1.1608 3.4844 29 1 2.3757 2.0185 -2.5785 30 1 0.9124 1.5298 -1.6825 31 1 -0.0420 0.6094 -3.8131 32 1 0.2810 2.3573 -3.9254 33 1 1.0750 1.0261 -5.9276 34 1 2.3492 1.9677 -5.1246 35 1 2.8908 -0.3547 -6.8873 36 1 4.2118 -2.4058 -6.5964 37 1 3.5432 -2.2464 -2.3855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596837868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:15:26 Heat of formation + Delta-G solvation = -69.649679 kcal Electronic energy + Delta-G solvation = -21765.616557 eV Core-core repulsion = 18421.517673 eV Total energy + Delta-G solvation = -3344.098883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.91712 -42.10953 -39.62835 -37.35333 -35.92499 -34.43067 -32.89466 -31.01780 -30.81236 -27.34206 -26.74365 -25.19189 -24.02920 -23.67285 -21.41094 -20.33562 -18.68646 -18.46462 -18.05484 -17.14979 -16.90246 -16.74592 -16.48004 -16.22153 -16.05406 -15.42897 -15.04508 -14.65456 -14.47969 -14.30495 -14.10620 -13.77573 -13.53562 -13.35344 -13.01567 -12.85795 -12.70236 -12.41212 -12.31478 -12.14991 -12.08597 -11.91783 -11.73218 -11.14121 -11.09020 -10.61853 -10.18716 -9.61624 -8.89802 -8.21958 -6.31702 0.12060 0.24936 1.37322 1.38694 1.49798 1.69058 1.84741 2.40509 2.65186 3.08785 3.28581 3.64344 3.83807 3.86451 4.05830 4.11082 4.17551 4.22500 4.38081 4.57830 4.64780 4.73095 4.78056 4.83250 4.94462 5.00298 5.03733 5.12152 5.19055 5.24944 5.33721 5.36625 5.44333 5.56982 5.67257 5.83753 6.06203 6.08373 6.39220 6.72741 7.18899 7.36651 8.84747 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021442 B = 0.005651 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.519607 B = 4953.992508 C = 6085.323521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.036 3.964 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.283 1.283 12 C 0.517 3.483 13 O -0.558 6.558 14 N -0.561 5.561 15 C 0.086 3.914 16 C -0.130 4.130 17 C -0.070 4.070 18 C -0.129 4.129 19 C -0.058 4.058 20 C -0.173 4.173 21 C 0.089 3.911 22 F -0.153 7.153 23 C -0.230 4.230 24 C 0.169 3.831 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.018 0.982 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.183 0.817 36 H 0.161 0.839 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 5.556 -18.831 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.014 3.986 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.310 3.690 13 O -0.436 6.436 14 N -0.283 5.283 15 C -0.034 4.034 16 C -0.167 4.167 17 C -0.106 4.106 18 C -0.132 4.132 19 C -0.076 4.076 20 C -0.193 4.193 21 C 0.070 3.930 22 F -0.132 7.132 23 C -0.251 4.251 24 C 0.073 3.927 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.200 0.800 36 H 0.179 0.821 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.217 5.082 -18.535 19.220 hybrid contribution 0.701 -1.237 1.647 2.176 sum 0.484 3.845 -16.888 17.327 Atomic orbital electron populations 1.21576 0.94607 1.00323 1.00781 1.18809 0.95387 0.96059 0.88303 0.93284 1.21180 1.32410 1.12657 0.91153 0.93941 1.25509 0.94982 0.95658 1.01143 1.69924 1.36607 1.23204 1.24586 0.85626 0.78600 0.78610 0.79248 1.19762 1.19602 1.20839 1.22131 0.75541 0.86388 0.84956 1.90352 1.48406 1.19455 1.85414 1.46157 1.56993 1.17447 1.07710 1.22440 0.99372 0.80019 1.01585 1.21917 0.97640 1.04774 0.92403 1.20578 0.97345 0.93156 0.99561 1.20098 1.02643 1.00797 0.89688 1.21207 0.93923 0.92903 0.99536 1.21346 1.03876 0.99175 0.94897 1.17821 0.95361 0.84722 0.95139 1.91434 1.75561 1.49470 1.96709 1.22038 1.02573 0.99480 1.01034 1.17814 0.93939 0.92977 0.87928 0.90442 0.93047 0.96243 0.92312 0.89417 0.88474 0.92172 0.86027 0.86943 0.88143 0.80017 0.82093 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.26 8.40 71.98 0.60 -4.66 16 2 C 0.04 1.78 1.78 -12.29 -0.02 1.76 16 3 H 0.05 2.45 7.18 -2.39 -0.02 2.43 16 4 C -0.54 -31.07 8.33 25.60 0.21 -30.86 16 5 H 0.04 2.66 6.95 -2.91 -0.02 2.64 16 6 C 0.03 1.52 5.30 84.66 0.45 1.97 16 7 N -0.90 -49.56 11.43 21.45 0.25 -49.31 16 8 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 C 0.52 24.77 6.70 87.66 0.59 25.36 16 13 O -0.56 -30.79 12.36 -3.05 -0.04 -30.83 16 14 N -0.56 -21.06 2.97 -629.36 -1.87 -22.93 16 15 C 0.09 2.35 5.73 86.44 0.50 2.85 16 16 C -0.13 -2.38 6.10 30.69 0.19 -2.19 16 17 C -0.07 -1.07 5.80 29.86 0.17 -0.89 16 18 C -0.13 -3.12 5.77 -19.65 -0.11 -3.24 16 19 C -0.06 -1.11 9.66 22.30 0.22 -0.90 16 20 C -0.17 -4.14 10.02 22.31 0.22 -3.91 16 21 C 0.09 3.03 7.30 22.34 0.16 3.19 16 22 F -0.15 -5.47 17.27 44.97 0.78 -4.69 16 23 C -0.23 -9.30 8.86 22.46 0.20 -9.10 16 24 C 0.17 5.94 6.31 38.07 0.24 6.18 16 25 H 0.08 3.76 6.37 -2.39 -0.02 3.74 16 26 H 0.05 1.92 6.57 -2.39 -0.02 1.90 16 27 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.85 4.70 -2.38 -0.01 2.84 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.07 8.13 -2.38 -0.02 1.05 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.14 6.77 4.94 -24.56 -0.12 6.65 16 Total: -1.00 -71.62 300.89 5.74 -65.88 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.99 Total: 9.48 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.62 Total: -14.45 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.62 Total: -72.24 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.04 Total: -30.83 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.62 5.74 -65.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596837868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.773 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds