Wall clock time and date at job start Mon Mar 30 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21289 * 119.99568 * 120.00122 * 12 2 1 14 14 N 1.34767 * 120.00195 * 300.00281 * 12 2 1 15 15 C 1.46505 * 119.99942 * 179.97438 * 14 12 2 16 16 H 1.08997 * 115.55271 * 9.33018 * 15 14 12 17 17 C 1.53007 * 117.49794 * 223.61937 * 15 14 12 18 18 C 1.53001 * 117.49521 * 154.99910 * 15 14 12 19 19 H 1.08996 * 117.50567 * 0.02562 * 18 15 14 20 20 C 1.50706 * 117.49693 * 214.99857 * 18 15 14 21 21 C 1.38241 * 119.97777 * 299.72933 * 20 18 15 22 22 C 1.38194 * 120.02414 * 179.76622 * 21 20 18 23 23 C 1.38462 * 119.97700 * 0.50624 * 22 21 20 24 24 F 1.35090 * 120.02731 * 179.76939 * 23 22 21 25 25 C 1.38458 * 119.94346 * 359.74670 * 23 22 21 26 26 C 1.38197 * 119.97645 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00452 * 0.02562 * 14 12 2 32 32 H 1.08996 * 117.49743 * 0.02562 * 17 15 14 33 33 H 1.08997 * 117.49256 * 145.02245 * 17 15 14 34 34 H 1.08003 * 119.98574 * 0.02562 * 21 20 18 35 35 H 1.08002 * 120.01105 * 180.25409 * 22 21 20 36 36 H 1.08001 * 120.00851 * 179.97438 * 25 23 22 37 37 H 1.08001 * 119.98527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.9388 -1.7177 3.4743 17 6 1.2024 -1.1594 4.7946 18 6 2.3189 -0.1230 4.9377 19 1 2.0371 0.9290 4.8946 20 6 3.4605 -0.4530 5.8645 21 6 3.5622 -1.7184 6.4119 22 6 4.6113 -2.0235 7.2581 23 6 5.5549 -1.0582 7.5660 24 9 6.5783 -1.3540 8.3967 25 6 5.4491 0.2103 7.0213 26 6 4.4017 0.5118 6.1716 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 1.1489 0.5384 2.5436 32 1 0.1864 -0.7893 4.6570 33 1 1.2934 -2.0801 5.3708 34 1 2.8237 -2.4700 6.1747 35 1 4.6928 -3.0134 7.6823 36 1 6.1844 0.9642 7.2611 37 1 4.3192 1.5011 5.7463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597579110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:18:30 Heat of formation + Delta-G solvation = -41.159268 kcal Electronic energy + Delta-G solvation = -20245.579490 eV Core-core repulsion = 16902.716043 eV Total energy + Delta-G solvation = -3342.863446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.05876 -39.93190 -38.74295 -36.73530 -33.75980 -32.63559 -31.36690 -30.51350 -29.62197 -25.15786 -24.03249 -23.48285 -22.88602 -21.34867 -20.61596 -19.53281 -17.93591 -16.78488 -16.35041 -16.25738 -15.83084 -15.73142 -15.25254 -14.65657 -14.46835 -14.04660 -13.77256 -13.59122 -13.12591 -12.89836 -12.76303 -12.51739 -12.24876 -11.72286 -11.63832 -11.19405 -11.10953 -11.03460 -10.73773 -10.69571 -10.53227 -10.27999 -9.97393 -9.32021 -9.00527 -8.85809 -8.64634 -8.35945 -8.15053 -6.05003 -4.08228 0.90642 1.02574 3.21845 3.33216 3.38926 3.45276 3.55339 3.70408 4.06557 4.09833 4.45507 4.50315 4.58610 4.66326 4.80661 4.90986 5.04285 5.06822 5.28079 5.29026 5.57604 5.73695 5.75467 5.83012 5.90745 5.94998 6.07417 6.30260 6.36934 6.58483 6.68127 6.79400 6.88547 7.01534 7.44346 7.73126 7.95900 8.10688 8.39492 9.00925 9.16789 9.57559 11.02661 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.003184 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.384143 B = 8791.152904 C = 9164.597283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.523 3.477 13 O -0.542 6.542 14 N -0.718 5.718 15 C 0.110 3.890 16 H 0.135 0.865 17 C -0.190 4.190 18 C -0.137 4.137 19 H 0.117 0.883 20 C -0.051 4.051 21 C -0.093 4.093 22 C -0.149 4.149 23 C 0.087 3.913 24 F -0.143 7.143 25 C -0.150 4.150 26 C -0.084 4.084 27 H 0.094 0.906 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.261 0.739 31 H 0.398 0.602 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 0.299 19.674 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.314 3.686 13 O -0.417 6.417 14 N -0.369 5.369 15 C 0.003 3.997 16 H 0.153 0.847 17 C -0.228 4.228 18 C -0.156 4.156 19 H 0.135 0.865 20 C -0.051 4.051 21 C -0.111 4.111 22 C -0.168 4.168 23 C 0.068 3.932 24 F -0.122 7.122 25 C -0.169 4.169 26 C -0.102 4.102 27 H 0.112 0.888 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.657 -0.328 19.410 19.594 hybrid contribution 0.173 0.010 -0.484 0.514 sum 2.830 -0.317 18.926 19.139 Atomic orbital electron populations 1.21754 0.96462 0.99895 1.00966 1.18884 0.94186 0.96865 0.89144 0.92883 1.21149 1.31045 1.12851 0.88977 0.90742 1.24949 0.95099 0.95047 0.99136 1.69868 1.37147 1.23053 1.23581 0.86445 0.79485 0.79246 0.82009 1.20653 1.21285 1.19710 1.22071 0.78157 0.84203 0.84211 1.90534 1.37749 1.26809 1.86594 1.45807 1.54507 1.31981 1.04637 1.21649 0.99591 0.97830 0.80657 0.84728 1.23625 0.95666 1.00245 1.03284 1.21570 0.96622 0.98349 0.99099 0.86514 1.19191 0.95521 0.93651 0.96763 1.20974 0.97490 0.96622 0.95978 1.21117 0.95160 0.99505 1.00987 1.17727 0.87208 0.94680 0.93621 1.91485 1.57278 1.93902 1.69536 1.21125 1.00416 0.95608 0.99749 1.20862 0.93021 0.99808 0.96525 0.88782 0.94926 0.96922 0.92939 0.76753 0.87959 0.87963 0.84695 0.84759 0.84749 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.87 37.16 0.33 -2.64 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.07 2.22 6.75 -52.48 -0.35 1.86 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.52 11.64 7.15 -10.99 -0.08 11.56 16 13 O -0.54 -13.92 15.03 5.55 0.08 -13.83 16 14 N -0.72 -11.92 5.46 -53.80 -0.29 -12.21 16 15 C 0.11 1.55 6.07 -67.92 -0.41 1.14 16 16 H 0.14 2.18 7.40 -51.93 -0.38 1.80 16 17 C -0.19 -2.01 9.79 -26.73 -0.26 -2.27 16 18 C -0.14 -1.47 5.96 -91.77 -0.55 -2.02 16 19 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 20 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 21 C -0.09 -0.94 9.30 -39.60 -0.37 -1.30 16 22 C -0.15 -1.49 10.03 -39.51 -0.40 -1.89 16 23 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.15 -1.50 10.03 -39.52 -0.40 -1.89 16 26 C -0.08 -0.85 9.73 -39.59 -0.39 -1.23 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.40 5.61 8.24 -40.82 -0.34 5.27 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 34 H 0.14 1.16 6.01 -52.48 -0.32 0.84 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -31.11 319.34 -8.28 -39.39 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.51 Total: 4.50 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -4.02 Total: -13.42 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.33 Total: -36.52 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.11 -8.28 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.767 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds