Wall clock time and date at job start Mon Mar 30 2020 08:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46997 * 90.00238 * 8 6 4 10 10 H 1.48501 * 109.47418 * 210.00367 * 8 6 4 11 11 H 1.48507 * 109.47103 * 330.00231 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21289 * 119.99568 * 120.00122 * 12 2 1 14 14 N 1.34767 * 120.00195 * 300.00281 * 12 2 1 15 15 C 1.46505 * 119.99942 * 179.97438 * 14 12 2 16 16 H 1.08997 * 115.55271 * 9.33018 * 15 14 12 17 17 C 1.53007 * 117.49794 * 223.61937 * 15 14 12 18 18 C 1.53001 * 117.49521 * 154.99910 * 15 14 12 19 19 H 1.08996 * 117.50567 * 0.02562 * 18 15 14 20 20 C 1.50706 * 117.49693 * 214.99857 * 18 15 14 21 21 C 1.38241 * 119.97777 * 299.72933 * 20 18 15 22 22 C 1.38194 * 120.02414 * 179.76622 * 21 20 18 23 23 C 1.38462 * 119.97700 * 0.50624 * 22 21 20 24 24 F 1.35090 * 120.02731 * 179.76939 * 23 22 21 25 25 C 1.38458 * 119.94346 * 359.74670 * 23 22 21 26 26 C 1.38197 * 119.97645 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00452 * 0.02562 * 14 12 2 32 32 H 1.08996 * 117.49743 * 0.02562 * 17 15 14 33 33 H 1.08997 * 117.49256 * 145.02245 * 17 15 14 34 34 H 1.08003 * 119.98574 * 0.02562 * 21 20 18 35 35 H 1.08002 * 120.01105 * 180.25409 * 22 21 20 36 36 H 1.08001 * 120.00851 * 179.97438 * 25 23 22 37 37 H 1.08001 * 119.98527 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1614 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.9388 -1.7177 3.4743 17 6 1.2024 -1.1594 4.7946 18 6 2.3189 -0.1230 4.9377 19 1 2.0371 0.9290 4.8946 20 6 3.4605 -0.4530 5.8645 21 6 3.5622 -1.7184 6.4119 22 6 4.6113 -2.0235 7.2581 23 6 5.5549 -1.0582 7.5660 24 9 6.5783 -1.3540 8.3967 25 6 5.4491 0.2103 7.0213 26 6 4.4017 0.5118 6.1716 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7094 1.1619 -3.4844 31 1 1.1489 0.5384 2.5436 32 1 0.1864 -0.7893 4.6570 33 1 1.2934 -2.0801 5.3708 34 1 2.8237 -2.4700 6.1747 35 1 4.6928 -3.0134 7.6823 36 1 6.1844 0.9642 7.2611 37 1 4.3192 1.5011 5.7463 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597579110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:18:30 Heat of formation + Delta-G solvation = -59.135870 kcal Electronic energy + Delta-G solvation = -20246.359014 eV Core-core repulsion = 16902.716043 eV Total energy + Delta-G solvation = -3343.642970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.90470 -40.99822 -40.10557 -37.85963 -35.75913 -34.10473 -32.25813 -32.12217 -30.66984 -27.19266 -25.07357 -24.78821 -23.79464 -22.62736 -21.54664 -21.10328 -18.75917 -18.38876 -17.82736 -17.63509 -16.97579 -16.59973 -16.42492 -16.33838 -15.77168 -15.47858 -14.95417 -14.50701 -14.46140 -14.31955 -13.81840 -13.61664 -13.49902 -13.21175 -12.96555 -12.71499 -12.57564 -12.49969 -12.34932 -12.12366 -12.03371 -11.94869 -11.44368 -11.03175 -10.61021 -10.32525 -10.07463 -9.89329 -9.23370 -8.14988 -6.25134 0.08650 0.27159 1.41039 1.41899 1.53606 1.86023 2.25195 2.46291 2.55560 3.11286 3.15505 3.28880 3.66528 3.77649 3.79521 3.95204 4.03054 4.16938 4.31268 4.32050 4.52061 4.75966 4.78458 4.94558 4.96597 4.99435 5.00415 5.06881 5.13071 5.17695 5.29100 5.51248 5.56052 5.65824 5.76722 5.91397 5.96092 6.22748 6.74200 6.86765 7.40433 7.54999 8.90733 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.003184 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.384143 B = 8791.152904 C = 9164.597283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.025 3.975 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.525 3.475 13 O -0.587 6.587 14 N -0.696 5.696 15 C 0.069 3.931 16 H 0.108 0.892 17 C -0.165 4.165 18 C -0.111 4.111 19 H 0.135 0.865 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.154 4.154 23 C 0.070 3.930 24 F -0.150 7.150 25 C -0.155 4.155 26 C -0.088 4.088 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.265 0.735 31 H 0.413 0.587 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 0.883 20.989 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.004 3.996 3 H 0.061 0.939 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.314 3.686 13 O -0.466 6.466 14 N -0.347 5.347 15 C -0.037 4.037 16 H 0.126 0.874 17 C -0.203 4.203 18 C -0.130 4.130 19 H 0.153 0.847 20 C -0.067 4.067 21 C -0.114 4.114 22 C -0.173 4.173 23 C 0.051 3.949 24 F -0.129 7.129 25 C -0.173 4.173 26 C -0.106 4.106 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.250 0.750 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.803 0.294 20.778 20.858 hybrid contribution 0.459 -0.151 -0.795 0.930 sum 2.262 0.143 19.983 20.111 Atomic orbital electron populations 1.21565 0.94858 0.99489 1.01866 1.18807 0.95460 0.95934 0.89409 0.93924 1.21310 1.31615 1.12753 0.91239 0.93427 1.25573 0.95203 0.95732 1.01360 1.69942 1.37234 1.23489 1.24317 0.85621 0.78638 0.78578 0.79208 1.19948 1.19957 1.20455 1.21570 0.77953 0.83596 0.85466 1.90509 1.39948 1.28758 1.87432 1.45389 1.53489 1.31932 1.03858 1.21697 1.01892 0.99312 0.80782 0.87423 1.23745 0.95851 1.00995 0.99711 1.21580 0.96511 0.99197 0.95711 0.84729 1.19340 0.95937 0.94216 0.97245 1.21182 0.97776 0.96798 0.95679 1.21341 0.94885 1.00167 1.00883 1.18002 0.87423 0.95441 0.94012 1.91466 1.57618 1.93999 1.69805 1.21356 1.00783 0.95742 0.99445 1.21105 0.92678 1.00527 0.96282 0.91130 0.95839 0.92649 0.92584 0.75031 0.86436 0.86323 0.83348 0.83233 0.83153 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.87 71.98 0.64 -4.65 16 2 C 0.03 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.53 -30.66 8.37 25.60 0.21 -30.44 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -50.66 11.32 21.45 0.24 -50.42 16 8 Si 0.95 44.80 29.54 68.60 2.03 46.83 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.58 7.15 87.66 0.63 24.21 16 13 O -0.59 -31.19 15.03 -3.06 -0.05 -31.23 16 14 N -0.70 -22.26 5.46 -442.52 -2.42 -24.67 16 15 C 0.07 1.86 6.07 44.99 0.27 2.14 16 16 H 0.11 3.53 7.40 -2.39 -0.02 3.51 16 17 C -0.16 -2.97 9.79 30.60 0.30 -2.67 16 18 C -0.11 -2.08 5.96 -11.54 -0.07 -2.15 16 19 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 20 C -0.07 -1.29 5.61 -19.86 -0.11 -1.40 16 21 C -0.10 -1.77 9.30 22.26 0.21 -1.56 16 22 C -0.15 -2.86 10.03 22.31 0.22 -2.64 16 23 C 0.07 1.44 7.30 22.38 0.16 1.61 16 24 F -0.15 -3.31 17.27 44.97 0.78 -2.54 16 25 C -0.15 -2.84 10.03 22.31 0.22 -2.62 16 26 C -0.09 -1.59 9.73 22.26 0.22 -1.37 16 27 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 28 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 30 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.41 10.63 8.24 -92.71 -0.76 9.86 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.77 6.17 -2.39 -0.01 1.76 16 34 H 0.15 2.21 6.01 -2.91 -0.02 2.19 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -68.76 319.34 4.24 -64.52 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.34 Total: 16.27 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 3.32 Total: -18.75 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.17 Total: -75.10 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.05 Total: -31.23 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.76 4.24 -64.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597579110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds