Wall clock time and date at job start Mon Mar 30 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 C 1.52995 * 109.47475 * 119.99745 * 2 1 3 5 5 H 1.08998 * 109.47199 * 173.79093 * 4 2 1 6 6 C 1.50704 * 109.46811 * 53.79686 * 4 2 1 7 7 O 1.20826 * 119.99860 * 259.99801 * 6 4 2 8 8 O 1.34237 * 120.00032 * 79.99829 * 6 4 2 9 9 N 1.46499 * 109.47429 * 293.79669 * 4 2 1 10 10 C 1.46500 * 120.00052 * 64.80639 * 9 4 2 11 11 C 1.50701 * 109.46761 * 251.91002 * 10 9 4 12 12 H 1.08001 * 119.99987 * 354.65615 * 11 10 9 13 13 C 1.37879 * 119.99875 * 174.66003 * 11 10 9 14 14 N 1.31514 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99776 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47104 * 119.99845 * 15 13 11 18 18 H 1.48499 * 109.46736 * 239.99724 * 15 13 11 19 19 C 1.39674 * 119.99952 * 244.80311 * 9 4 2 20 20 C 1.38910 * 120.07668 * 174.96152 * 19 9 4 21 21 C 1.38098 * 119.92590 * 180.27741 * 20 19 9 22 22 C 1.38289 * 120.07475 * 359.51310 * 21 20 19 23 23 C 1.38285 * 120.14650 * 0.47072 * 22 21 20 24 24 C 1.38104 * 120.07583 * 359.78343 * 23 22 21 25 25 H 1.08999 * 109.46946 * 316.62800 * 1 2 3 26 26 H 1.08990 * 109.47500 * 76.63187 * 1 2 3 27 27 H 1.08997 * 109.46626 * 196.63163 * 1 2 3 28 28 H 1.08997 * 109.46796 * 240.00417 * 2 1 3 29 29 H 1.09003 * 109.46874 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47298 * 299.99869 * 3 2 1 31 31 H 1.09000 * 109.47570 * 60.00319 * 3 2 1 32 32 H 0.96698 * 116.99236 * 179.97438 * 8 6 4 33 33 H 1.09002 * 109.47190 * 11.90375 * 10 9 4 34 34 H 1.08991 * 109.47269 * 131.90978 * 10 9 4 35 35 H 0.96997 * 120.00346 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03094 * 0.02562 * 20 19 9 37 37 H 1.08004 * 119.96260 * 179.73072 * 21 20 19 38 38 H 1.08000 * 119.92020 * 180.20841 * 22 21 20 39 39 H 1.08005 * 119.95969 * 179.76701 * 23 22 21 40 40 H 1.08006 * 120.03266 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1244 -0.8184 1.1953 6 6 1.4164 -2.0908 1.3284 7 8 0.4732 -2.2837 2.0586 8 8 1.9086 -3.0963 0.5877 9 7 1.6776 0.0502 2.4407 10 6 0.2677 0.2302 2.7958 11 6 -0.1398 1.6560 2.5273 12 1 0.5990 2.3789 2.2141 13 6 -1.4557 2.0376 2.6816 14 7 -2.3554 1.1573 3.0626 15 14 -1.9606 3.8052 2.3494 16 1 -0.7700 4.5911 1.9374 17 1 -2.9738 3.8350 1.2641 18 1 -2.5396 4.3947 3.5833 19 6 2.6761 0.6140 3.2382 20 6 2.3340 1.4321 4.3075 21 6 3.3239 1.9925 5.0905 22 6 4.6542 1.7319 4.8173 23 6 4.9983 0.9177 3.7538 24 6 4.0135 0.3583 2.9636 25 1 -0.3633 0.7470 0.7057 26 1 -0.3634 0.2376 -0.9997 27 1 -0.3632 -0.9847 0.2941 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.4755 -3.9567 0.6726 33 1 -0.3466 -0.4421 2.1968 34 1 0.1277 0.0053 3.8530 35 1 -3.2811 1.4258 3.1714 36 1 1.2950 1.6328 4.5237 37 1 3.0587 2.6321 5.9193 38 1 5.4263 2.1688 5.4333 39 1 6.0384 0.7193 3.5409 40 1 4.2830 -0.2772 2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021811520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:16 Heat of formation + Delta-G solvation = -49.257245 kcal Electronic energy + Delta-G solvation = -23065.266650 eV Core-core repulsion = 19845.512354 eV Total energy + Delta-G solvation = -3219.754296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44431 -38.75022 -36.80329 -35.58091 -33.46795 -32.73057 -30.41447 -28.95787 -28.47903 -26.61011 -25.41504 -22.89922 -22.09080 -21.48094 -20.44996 -19.06811 -17.74605 -16.97987 -16.74084 -15.87701 -15.54066 -15.02151 -14.72624 -14.26265 -14.18359 -13.35074 -13.15484 -13.02148 -12.80540 -12.61627 -12.42863 -12.07506 -12.04619 -11.66451 -11.15941 -11.07289 -10.98801 -10.89005 -10.81850 -10.57224 -10.45966 -10.39788 -10.13726 -9.76744 -9.72486 -9.21886 -8.81344 -8.46740 -8.27427 -6.55374 -6.04245 -4.13714 2.08136 2.26225 2.59952 3.20507 3.24536 3.33941 3.37811 4.04563 4.38386 4.58226 5.10024 5.20231 5.22514 5.43931 5.52583 5.60810 5.67292 5.83742 5.92398 6.06267 6.06765 6.30121 6.32372 6.35081 6.49408 6.62142 6.64711 6.65349 6.79956 6.96235 7.01692 7.10103 7.24940 7.33366 7.54470 7.58390 7.66822 7.83643 8.13512 8.19082 8.32568 8.45329 8.94969 9.48028 10.95740 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.009626 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.138058 B = 2908.043936 C = 4226.822162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 C -0.147 4.147 4 C 0.167 3.833 5 H 0.109 0.891 6 C 0.462 3.538 7 O -0.487 6.487 8 O -0.525 6.525 9 N -0.592 5.592 10 C 0.242 3.758 11 C -0.527 4.527 12 H 0.068 0.932 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.887 3.113 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.237 3.763 20 C -0.172 4.172 21 C -0.081 4.081 22 C -0.198 4.198 23 C -0.081 4.081 24 C -0.222 4.222 25 H 0.131 0.869 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.018 0.982 35 H 0.263 0.737 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 -3.080 -3.711 11.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.059 3.941 5 H 0.127 0.873 6 C 0.301 3.699 7 O -0.372 6.372 8 O -0.337 6.337 9 N -0.300 5.300 10 C 0.123 3.877 11 C -0.566 4.566 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.715 3.285 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.132 3.868 20 C -0.194 4.194 21 C -0.100 4.100 22 C -0.219 4.219 23 C -0.100 4.100 24 C -0.245 4.245 25 H 0.149 0.851 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.905 -2.863 -3.600 10.921 hybrid contribution -0.710 0.224 -0.182 0.766 sum 9.195 -2.638 -3.782 10.286 Atomic orbital electron populations 1.22677 0.93450 1.05013 1.03179 1.21287 0.98163 0.96979 0.94067 1.21916 0.99347 0.95309 1.03819 1.20458 0.99918 0.84478 0.89207 0.87323 1.24378 0.81918 0.87236 0.76341 1.90773 1.26275 1.83129 1.37014 1.84560 1.61558 1.22453 1.65117 1.46945 1.07013 1.52286 1.23729 1.19726 0.74322 0.96847 0.96827 1.21616 0.93565 0.95559 1.45811 0.91450 1.24955 0.96534 0.97206 0.95247 1.69974 1.02418 1.33698 1.46109 0.86606 0.78761 0.85185 0.77990 1.19519 1.21024 1.20973 1.17873 0.87666 0.91171 0.90056 1.21093 1.01157 1.00489 0.96625 1.20876 0.92642 0.98196 0.98322 1.20700 0.95917 1.04494 1.00767 1.20644 0.97763 0.96671 0.94902 1.20602 0.91718 1.08008 1.04189 0.85069 0.94373 0.93852 0.91432 0.93917 0.93209 0.89163 0.74023 0.90942 0.96426 0.92722 0.83954 0.87034 0.87649 0.87381 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 7.63 37.16 0.28 -3.40 16 2 C -0.09 -1.44 2.86 -90.62 -0.26 -1.70 16 3 C -0.15 -2.47 8.90 37.16 0.33 -2.14 16 4 C 0.17 2.94 2.53 -69.08 -0.17 2.76 16 5 H 0.11 1.67 5.31 -51.93 -0.28 1.39 16 6 C 0.46 8.22 6.16 36.01 0.22 8.44 16 7 O -0.49 -10.52 13.94 -18.75 -0.26 -10.78 16 8 O -0.53 -7.14 13.42 -39.27 -0.53 -7.67 16 9 N -0.59 -12.05 1.57 -166.87 -0.26 -12.31 16 10 C 0.24 5.86 3.00 -5.19 -0.02 5.84 16 11 C -0.53 -13.13 4.46 -34.44 -0.15 -13.28 16 12 H 0.07 1.69 5.88 -52.49 -0.31 1.38 16 13 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 14 N -0.88 -24.64 13.29 55.43 0.74 -23.91 16 15 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.24 4.62 6.39 -83.79 -0.54 4.09 16 20 C -0.17 -3.43 8.82 -39.38 -0.35 -3.78 16 21 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 22 C -0.20 -3.10 10.04 -39.55 -0.40 -3.49 16 23 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 24 C -0.22 -3.75 9.31 -39.38 -0.37 -4.12 16 25 H 0.13 3.03 3.68 -51.93 -0.19 2.84 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.90 5.52 -51.93 -0.29 0.61 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.79 4.58 -51.93 -0.24 1.56 16 32 H 0.40 3.76 9.10 45.56 0.41 4.17 16 33 H 0.07 1.90 3.80 -51.93 -0.20 1.70 16 34 H 0.02 0.49 7.51 -51.93 -0.39 0.10 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.14 3.18 5.84 -52.49 -0.31 2.88 16 37 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.11 1.67 5.74 -52.48 -0.30 1.37 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -29.00 310.58 -7.13 -36.13 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.17 Total: 11.08 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.30 Total: -12.64 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.47 Total: -36.22 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.79 Total: -18.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.00 -7.13 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021811520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.126 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds