Wall clock time and date at job start Mon Mar 30 2020 07:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46695 * 2 1 4 4 C 1.52995 * 109.47475 * 119.99745 * 2 1 3 5 5 H 1.08998 * 109.47199 * 173.79093 * 4 2 1 6 6 C 1.50704 * 109.46811 * 53.79686 * 4 2 1 7 7 O 1.20826 * 119.99860 * 259.99801 * 6 4 2 8 8 O 1.34237 * 120.00032 * 79.99829 * 6 4 2 9 9 N 1.46499 * 109.47429 * 293.79669 * 4 2 1 10 10 C 1.46500 * 120.00052 * 64.80639 * 9 4 2 11 11 C 1.50701 * 109.46761 * 251.91002 * 10 9 4 12 12 H 1.08001 * 119.99987 * 354.65615 * 11 10 9 13 13 C 1.37879 * 119.99875 * 174.66003 * 11 10 9 14 14 N 1.31514 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99776 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47363 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47104 * 119.99845 * 15 13 11 18 18 H 1.48499 * 109.46736 * 239.99724 * 15 13 11 19 19 C 1.39674 * 119.99952 * 244.80311 * 9 4 2 20 20 C 1.38910 * 120.07668 * 174.96152 * 19 9 4 21 21 C 1.38098 * 119.92590 * 180.27741 * 20 19 9 22 22 C 1.38289 * 120.07475 * 359.51310 * 21 20 19 23 23 C 1.38285 * 120.14650 * 0.47072 * 22 21 20 24 24 C 1.38104 * 120.07583 * 359.78343 * 23 22 21 25 25 H 1.08999 * 109.46946 * 316.62800 * 1 2 3 26 26 H 1.08990 * 109.47500 * 76.63187 * 1 2 3 27 27 H 1.08997 * 109.46626 * 196.63163 * 1 2 3 28 28 H 1.08997 * 109.46796 * 240.00417 * 2 1 3 29 29 H 1.09003 * 109.46874 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47298 * 299.99869 * 3 2 1 31 31 H 1.09000 * 109.47570 * 60.00319 * 3 2 1 32 32 H 0.96698 * 116.99236 * 179.97438 * 8 6 4 33 33 H 1.09002 * 109.47190 * 11.90375 * 10 9 4 34 34 H 1.08991 * 109.47269 * 131.90978 * 10 9 4 35 35 H 0.96997 * 120.00346 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.03094 * 0.02562 * 20 19 9 37 37 H 1.08004 * 119.96260 * 179.73072 * 21 20 19 38 38 H 1.08000 * 119.92020 * 180.20841 * 22 21 20 39 39 H 1.08005 * 119.95969 * 179.76701 * 23 22 21 40 40 H 1.08006 * 120.03266 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1244 -0.8184 1.1953 6 6 1.4164 -2.0908 1.3284 7 8 0.4732 -2.2837 2.0586 8 8 1.9086 -3.0963 0.5877 9 7 1.6776 0.0502 2.4407 10 6 0.2677 0.2302 2.7958 11 6 -0.1398 1.6560 2.5273 12 1 0.5990 2.3789 2.2141 13 6 -1.4557 2.0376 2.6816 14 7 -2.3554 1.1573 3.0626 15 14 -1.9606 3.8052 2.3494 16 1 -0.7700 4.5911 1.9374 17 1 -2.9738 3.8350 1.2641 18 1 -2.5396 4.3947 3.5833 19 6 2.6761 0.6140 3.2382 20 6 2.3340 1.4321 4.3075 21 6 3.3239 1.9925 5.0905 22 6 4.6542 1.7319 4.8173 23 6 4.9983 0.9177 3.7538 24 6 4.0135 0.3583 2.9636 25 1 -0.3633 0.7470 0.7057 26 1 -0.3634 0.2376 -0.9997 27 1 -0.3632 -0.9847 0.2941 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.4755 -3.9567 0.6726 33 1 -0.3466 -0.4421 2.1968 34 1 0.1277 0.0053 3.8530 35 1 -3.2811 1.4258 3.1714 36 1 1.2950 1.6328 4.5237 37 1 3.0587 2.6321 5.9193 38 1 5.4263 2.1688 5.4333 39 1 6.0384 0.7193 3.5409 40 1 4.2830 -0.2772 2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021811520.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:15 Heat of formation + Delta-G solvation = -66.160832 kcal Electronic energy + Delta-G solvation = -23065.999645 eV Core-core repulsion = 19845.512354 eV Total energy + Delta-G solvation = -3220.487291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86294 -40.12727 -38.16624 -36.95366 -35.15460 -34.43301 -31.84469 -30.43211 -30.08261 -28.03797 -27.10330 -24.64309 -23.44752 -22.85386 -21.90918 -20.44275 -19.16019 -18.67673 -18.23829 -17.42822 -16.96087 -16.64559 -16.13771 -15.83652 -15.62596 -14.76283 -14.57466 -14.44008 -14.30696 -14.26215 -13.92274 -13.65742 -13.60527 -13.08177 -12.82131 -12.73206 -12.59422 -12.45349 -12.17801 -12.08929 -12.01678 -11.91705 -11.74070 -11.38952 -11.21971 -10.88041 -10.50150 -10.40739 -9.61984 -8.27157 -7.84652 -6.19278 0.74078 0.92197 1.21205 1.37795 1.41193 1.51466 1.92831 2.40147 2.62125 3.17128 3.22347 3.76671 3.84912 4.15217 4.29545 4.32006 4.37947 4.52913 4.62645 4.71987 4.79717 4.89750 4.91758 4.96703 5.10718 5.17246 5.22902 5.26659 5.38694 5.41086 5.57599 5.66119 5.75983 5.80130 5.87936 5.92805 5.94164 6.21243 6.26661 6.52768 6.89358 6.97861 7.05581 7.45379 8.94776 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.009626 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.138058 B = 2908.043936 C = 4226.822162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.162 3.838 5 H 0.141 0.859 6 C 0.467 3.533 7 O -0.536 6.536 8 O -0.506 6.506 9 N -0.601 5.601 10 C 0.269 3.731 11 C -0.504 4.504 12 H 0.066 0.934 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.946 3.054 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.286 1.286 19 C 0.212 3.788 20 C -0.206 4.206 21 C -0.087 4.087 22 C -0.191 4.191 23 C -0.073 4.073 24 C -0.218 4.218 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.423 0.577 33 H 0.053 0.947 34 H -0.033 1.033 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.149 0.851 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.066 -2.771 -5.271 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.099 4.099 3 C -0.198 4.198 4 C 0.055 3.945 5 H 0.158 0.842 6 C 0.309 3.691 7 O -0.425 6.425 8 O -0.319 6.319 9 N -0.309 5.309 10 C 0.149 3.851 11 C -0.543 4.543 12 H 0.084 0.916 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.212 1.212 19 C 0.109 3.891 20 C -0.229 4.229 21 C -0.106 4.106 22 C -0.211 4.211 23 C -0.092 4.092 24 C -0.241 4.241 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.284 0.716 33 H 0.071 0.929 34 H -0.015 1.015 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.653 -2.563 -5.182 14.826 hybrid contribution -1.708 0.055 0.324 1.739 sum 11.945 -2.508 -4.858 13.137 Atomic orbital electron populations 1.22531 0.96014 1.02624 1.02793 1.21320 0.95809 0.97660 0.95145 1.21817 1.00770 0.94652 1.02533 1.20743 1.01550 0.84008 0.88195 0.84181 1.24441 0.80957 0.88093 0.75632 1.90775 1.28455 1.83984 1.39294 1.84486 1.60885 1.22995 1.63494 1.46668 1.05475 1.53572 1.25182 1.19064 0.76964 0.95886 0.93229 1.21703 0.93184 0.95831 1.43581 0.91644 1.25674 0.96808 1.00587 0.95589 1.70107 1.02598 1.35581 1.48419 0.85672 0.78445 0.81071 0.77568 1.18699 1.20766 1.21209 1.18128 0.88813 0.91891 0.90239 1.20948 0.99969 1.03086 0.98851 1.21090 0.93197 0.98035 0.98238 1.21107 0.95521 1.03622 1.00878 1.21137 0.99392 0.94997 0.93650 1.20879 0.90339 1.07877 1.04957 0.88707 0.92829 0.95693 0.87844 0.91498 0.92112 0.92732 0.71595 0.92878 1.01510 0.92992 0.88080 0.85746 0.84336 0.83291 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.24 7.63 71.98 0.55 -6.69 16 2 C -0.08 -2.54 2.86 -10.79 -0.03 -2.57 16 3 C -0.14 -4.40 8.90 71.98 0.64 -3.76 16 4 C 0.16 5.44 2.53 44.25 0.11 5.55 16 5 H 0.14 3.77 5.31 -2.39 -0.01 3.76 16 6 C 0.47 16.29 6.16 71.24 0.44 16.73 16 7 O -0.54 -24.01 13.94 21.96 0.31 -23.70 16 8 O -0.51 -12.44 13.42 -51.48 -0.69 -13.13 16 9 N -0.60 -24.92 1.57 -681.85 -1.07 -25.99 16 10 C 0.27 13.97 3.00 85.63 0.26 14.23 16 11 C -0.50 -26.53 4.46 25.60 0.11 -26.41 16 12 H 0.07 3.42 5.88 -2.91 -0.02 3.41 16 13 C 0.01 0.67 5.31 84.66 0.45 1.12 16 14 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 15 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 19 C 0.21 8.26 6.39 38.21 0.24 8.51 16 20 C -0.21 -8.55 8.82 22.40 0.20 -8.35 16 21 C -0.09 -2.92 10.04 22.25 0.22 -2.70 16 22 C -0.19 -5.29 10.04 22.29 0.22 -5.06 16 23 C -0.07 -1.92 10.04 22.25 0.22 -1.69 16 24 C -0.22 -6.67 9.31 22.40 0.21 -6.46 16 25 H 0.09 4.54 3.68 -2.39 -0.01 4.53 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.02 1.04 5.52 -2.39 -0.01 1.03 16 28 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 2.13 4.58 -2.39 -0.01 2.12 16 32 H 0.42 6.91 9.10 -74.06 -0.67 6.24 16 33 H 0.05 2.98 3.80 -2.39 -0.01 2.97 16 34 H -0.03 -2.00 7.51 -2.39 -0.02 -2.01 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.10 4.95 5.84 -2.91 -0.02 4.94 16 37 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 39 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.14 3.40 5.74 -2.91 -0.02 3.38 16 Total: -1.00 -68.43 310.58 5.11 -63.32 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.40 Total: 26.08 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 3.85 Total: -17.58 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -0.79 Total: -80.58 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.38 Total: -36.83 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.43 5.11 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021811520.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.844 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds