Wall clock time and date at job start Mon Mar 30 2020 08:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47118 * 2 1 4 4 H 1.09003 * 109.46862 * 179.65027 * 3 2 1 5 5 C 1.50693 * 109.46919 * 299.65189 * 3 2 1 6 6 H 1.08002 * 119.99846 * 114.31342 * 5 3 2 7 7 C 1.37877 * 120.00293 * 294.31619 * 5 3 2 8 8 N 1.31516 * 119.99780 * 347.42885 * 7 5 3 9 9 Si 1.86798 * 120.00144 * 167.15371 * 7 5 3 10 10 H 1.48503 * 109.47044 * 89.99987 * 9 7 5 11 11 H 1.48499 * 109.47307 * 210.00022 * 9 7 5 12 12 H 1.48502 * 109.47348 * 330.00082 * 9 7 5 13 13 N 1.46900 * 109.46953 * 59.65108 * 3 2 1 14 14 C 1.46904 * 110.99957 * 89.00952 * 13 3 2 15 15 H 1.09007 * 109.46904 * 329.11883 * 14 13 3 16 16 C 1.52995 * 109.47188 * 89.12191 * 14 13 3 17 17 C 1.50704 * 109.47071 * 209.12363 * 14 13 3 18 18 C 1.38251 * 119.92774 * 319.72280 * 17 14 13 19 19 C 1.38241 * 120.14128 * 179.69138 * 18 17 14 20 20 C 1.38542 * 120.02712 * 0.59636 * 19 18 17 21 21 C 1.39264 * 119.83170 * 359.68223 * 20 19 18 22 22 C 1.38238 * 119.92728 * 139.99801 * 17 14 13 23 23 O 1.36495 * 108.63897 * 180.02562 * 21 20 19 24 24 C 1.43988 * 105.48608 * 342.71753 * 23 21 20 25 25 O 1.36498 * 131.52711 * 179.68898 * 20 19 18 26 26 H 1.09001 * 109.46958 * 65.04291 * 1 2 3 27 27 H 1.08999 * 109.46916 * 185.03940 * 1 2 3 28 28 H 1.08996 * 109.47333 * 305.04330 * 1 2 3 29 29 H 1.08994 * 109.47559 * 240.00126 * 2 1 3 30 30 H 1.09001 * 109.46949 * 119.99400 * 2 1 3 31 31 H 0.96997 * 119.99957 * 1.45750 * 8 7 5 32 32 H 1.00895 * 111.00350 * 212.95983 * 13 3 2 33 33 H 1.09005 * 109.47030 * 179.97438 * 16 14 13 34 34 H 1.09002 * 109.46883 * 299.99950 * 16 14 13 35 35 H 1.08993 * 109.47547 * 60.00161 * 16 14 13 36 36 H 1.08005 * 119.92587 * 359.97438 * 18 17 14 37 37 H 1.07997 * 119.97939 * 180.27603 * 19 18 17 38 38 H 1.07996 * 119.98611 * 0.02562 * 22 17 14 39 39 H 1.09000 * 110.57440 * 268.55784 * 24 23 21 40 40 H 1.09002 * 110.56712 * 145.68376 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 0.0063 5 6 1.5447 2.1504 -1.2347 6 1 0.8498 2.9721 -1.1439 7 6 1.9787 1.7490 -2.4803 8 7 2.9994 0.9266 -2.5876 9 14 1.1121 2.3673 -4.0153 10 1 1.7527 3.6269 -4.4720 11 1 1.2129 1.3440 -5.0868 12 1 -0.3180 2.6226 -3.7076 13 7 1.5434 2.1375 1.1952 14 6 2.4699 1.9723 2.3232 15 1 2.9751 1.0099 2.2405 16 6 3.5074 3.0965 2.2999 17 6 1.7001 2.0260 3.6176 18 6 0.6729 2.9384 3.7719 19 6 -0.0404 2.9871 4.9551 20 6 0.2811 2.1291 5.9943 21 6 1.3195 1.2139 5.8410 22 6 2.0262 1.1666 4.6502 23 8 1.4374 0.4908 6.9927 24 6 0.7331 1.2472 7.9952 25 8 -0.2514 1.9797 7.2422 26 1 -0.3633 0.4336 -0.9317 27 1 -0.3633 -1.0237 0.0903 28 1 -0.3634 0.5900 0.8413 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.4334 0.5858 -1.7899 32 1 1.3781 3.1141 1.0032 33 1 4.1946 2.9742 3.1371 34 1 4.0642 3.0577 1.3636 35 1 3.0024 4.0588 2.3825 36 1 0.4243 3.6114 2.9647 37 1 -0.8452 3.6978 5.0712 38 1 2.8322 0.4582 4.5286 39 1 1.4112 1.9311 8.5058 40 1 0.2507 0.5801 8.7097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:12:09 Heat of formation + Delta-G solvation = -45.348090 kcal Electronic energy + Delta-G solvation = -21710.309802 eV Core-core repulsion = 18490.725020 eV Total energy + Delta-G solvation = -3219.584782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12085 -38.62970 -36.44742 -36.27117 -33.72081 -31.30963 -30.53353 -29.54321 -28.18457 -25.90502 -25.29159 -23.51091 -23.41890 -22.74544 -20.87164 -19.28209 -17.86226 -17.56070 -17.14914 -17.01857 -16.08327 -14.80452 -14.53099 -14.42581 -14.02139 -13.81067 -13.75073 -13.40676 -13.19564 -12.99559 -12.92810 -12.68897 -12.47474 -12.15147 -11.88034 -11.30883 -11.20380 -10.97793 -10.80358 -10.66760 -10.60113 -10.17401 -10.12064 -9.93619 -9.70483 -8.75671 -8.63615 -8.22067 -7.90764 -7.43036 -6.39334 -4.07513 1.27061 1.33665 2.75767 3.40783 3.41219 3.46809 3.61500 3.70196 4.49512 4.54593 4.55583 4.72888 4.95039 5.12657 5.19343 5.29860 5.35637 5.38913 5.55914 5.61233 5.67638 5.95961 6.07326 6.16989 6.21797 6.27715 6.35534 6.46015 6.47328 6.53511 6.62713 6.77383 6.99064 7.06729 7.18322 7.26873 7.48592 7.53352 7.85077 8.06726 8.48536 8.56287 8.85138 9.62265 10.98646 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.003932 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.128649 B = 7118.985031 C = 7139.285075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.206 3.794 4 H -0.003 1.003 5 C -0.599 4.599 6 H 0.053 0.947 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 1.065 2.935 10 H -0.290 1.290 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.121 3.879 15 H 0.080 0.920 16 C -0.171 4.171 17 C -0.040 4.040 18 C -0.085 4.085 19 C -0.100 4.100 20 C 0.015 3.985 21 C 0.027 3.973 22 C -0.099 4.099 23 O -0.313 6.313 24 C 0.214 3.786 25 O -0.314 6.314 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.270 0.730 32 H 0.336 0.664 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 3.048 17.031 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.098 3.902 4 H 0.014 0.986 5 C -0.637 4.637 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.301 5.301 14 C 0.010 3.990 15 H 0.098 0.902 16 C -0.230 4.230 17 C -0.041 4.041 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.029 4.029 21 C -0.017 4.017 22 C -0.119 4.119 23 O -0.229 6.229 24 C 0.102 3.898 25 O -0.230 6.230 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.097 0.903 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.879 2.305 15.693 16.121 hybrid contribution 0.685 0.483 1.743 1.934 sum -2.193 2.788 17.436 17.793 Atomic orbital electron populations 1.21421 0.96538 0.97643 1.02133 1.21483 0.96294 0.98307 0.98169 1.19237 0.92656 0.91273 0.87038 0.98556 1.21945 1.30719 1.19268 0.91791 0.92832 1.25665 0.95246 0.95762 1.01252 1.70778 1.18411 1.31751 1.33321 0.83613 0.75587 0.76002 0.75462 1.21701 1.21036 1.21331 1.60657 1.45167 1.17944 1.06351 1.20432 0.90949 0.98809 0.88821 0.90204 1.22446 0.99544 0.98952 1.02074 1.19776 0.95985 0.93988 0.94328 1.20767 0.94807 0.99118 0.95667 1.20072 1.01979 0.98488 0.91320 1.19744 0.95620 0.99688 0.87849 1.19684 0.98400 0.93661 0.89967 1.19919 1.00430 1.01489 0.90017 1.87335 1.73458 1.44542 1.17573 1.25526 0.85116 0.89669 0.89493 1.87318 1.41263 1.73566 1.20875 0.92682 0.96516 0.92754 0.92649 0.96268 0.91866 0.84519 0.92926 0.91752 0.92492 0.84296 0.85104 0.85166 0.90337 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.49 37.16 0.35 -2.25 16 2 C -0.10 -2.39 5.56 -26.73 -0.15 -2.53 16 3 C 0.21 4.78 1.72 -68.86 -0.12 4.67 16 4 H 0.00 -0.08 6.63 -51.93 -0.34 -0.42 16 5 C -0.60 -15.52 7.31 -34.44 -0.25 -15.77 16 6 H 0.05 1.39 7.65 -52.49 -0.40 0.99 16 7 C 0.03 0.70 5.15 -17.82 -0.09 0.61 16 8 N -0.91 -26.09 13.05 55.43 0.72 -25.37 16 9 Si 1.06 24.39 29.92 -169.99 -5.09 19.30 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.67 -12.89 4.60 -102.16 -0.47 -13.36 16 14 C 0.12 1.99 2.59 -68.86 -0.18 1.81 16 15 H 0.08 1.40 7.27 -51.93 -0.38 1.02 16 16 C -0.17 -2.55 9.13 37.15 0.34 -2.21 16 17 C -0.04 -0.60 4.96 -104.62 -0.52 -1.12 16 18 C -0.09 -1.20 9.31 -39.58 -0.37 -1.57 16 19 C -0.10 -1.34 10.06 -39.47 -0.40 -1.73 16 20 C 0.01 0.21 7.15 -39.09 -0.28 -0.07 16 21 C 0.03 0.40 7.15 -39.09 -0.28 0.12 16 22 C -0.10 -1.46 9.68 -39.47 -0.38 -1.84 16 23 O -0.31 -4.25 11.40 -45.67 -0.52 -4.77 16 24 C 0.21 2.15 8.89 101.05 0.90 3.04 16 25 O -0.31 -4.14 11.40 -45.68 -0.52 -4.66 16 26 H 0.05 1.27 7.41 -51.93 -0.38 0.89 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 1.15 7.44 -51.93 -0.39 0.76 16 29 H 0.05 1.40 6.68 -51.93 -0.35 1.05 16 30 H 0.02 0.41 7.80 -51.93 -0.41 0.00 16 31 H 0.27 7.76 6.28 -40.82 -0.26 7.50 16 32 H 0.34 6.38 7.38 -39.29 -0.29 6.09 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 35 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 36 H 0.14 1.84 7.38 -52.48 -0.39 1.46 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.13 1.76 8.03 -52.49 -0.42 1.34 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -29.30 326.37 -8.12 -37.42 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.74 Total: 5.37 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.42 Total: -18.84 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.25 Total: -38.73 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.04 Total: -9.43 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.09 Total: 19.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.30 -8.12 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.930 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds